Xiphophorus couchianus (Monterrey platyfish): 114135556
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Entry
114135556 CDS
T05908
Symbol
tmf1
Name
(RefSeq) TATA element modulatory factor
KO
K20286
TATA element modulatory factor
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114135556 (tmf1)
Membrane trafficking [BR:
xco04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
114135556 (tmf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
114135556
NCBI-ProteinID:
XP_027858734
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All DBs
Position
20:25727999..25739369
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AA seq
1147 aa
AA seq
DB search
MSWFNASHLSSFAKQALTTAQKSIDRVLDIKEEDQWGDTVVMPYDDTTTPGKVSVSGGWG
MTQWEAPAEEKATTPPLNSDAITTPVTRTVVDESENFFSAFLSPGDVPVTKAKVVSVPPV
KSQRRTQETEKKSQGGLLQIQNEDGIAEPTEPTEQSVEGQTVADGQPDEAESSPAAPYTD
AILLQPVSPVTSPGDHPFSPDCVKTDAESVPSESKTEPEPEDPPEQQVETDSPNSSESPP
SEAKSSTPADPSTPTSTKEVLPGQKDSKPEDRQTDTPSPPVSAFSSGTSTTSDIEVLDHE
SVQSESSASSRQETGESKTGLHLMQGSFQLLTASTCGDFARLEDYHKLTESCGSSSDAFE
RIDSFSMQSLDSRSVSEVNSDDEIPGSRTLASVTAGPAPPTETCPKQEDGAEENAAEEND
GKEEGYAETGKEQSLDEMEESGRSATPVNSEQPDELCAGVDDDAMFGSTCNEEEKSTPPI
TEEMKSVSPAQILELQKVIDDLSSRLEKRESQLLAVSKDKARLEEECDNLKDEVISLKEE
SSTVQSLKDEFTQRIADAERKAQLACKERDIAKKEIKGLREDLSTRLNSSDTMELIREKE
EQIRGLLEEGEKLSKQQLQHSNIIKKLRVKEKECDSRITKQQKKIKEQEEELRHLQQVLD
GKEEVEKQHRENIRKLNGVVEQQEKELSRLQTDDEELQEKNRSLQAALDSSYKELAELHK
AQASRASEAEEVALSREIQAKEQLSLALEKAQEEARIQQEALANQVADLRIALQRTEQQQ
ARKEDYLREEISELQQRLQEAETRNQELSQSVTSATRPLLRQIENLQASLGGQTASWEKL
EKNISDRLADAQTQLAVAVEKERSAAEELLSIKSQLASLESQNSSVRQEKARVLAQLEAE
KSKREKLEDESSREHAELTNLRGEHSRMLEEAKKEKLLLTNQLEMEKMKVEQEKKKCYLA
QEALKEKERKAVTHSVGDPPAASTPSLSRSSSVNGMENAGLHTSVLSQDDCLDHSMGTIT
MSMSGTNLYEAARLSGGSSIMENLQSQLKLREGEIAQLQLEIASLERSRSVMAEELVRLT
NQNDEMEEKVKDIPKLKIQLKDLEQRHNTILQMYGEKAEEAEELRLDLEDVKNMYKTQID
ELLKNQK
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgagttggttcaacgcgtctcacctgtccagcttcgctaaacaagctttgacgacagcg
cagaaatcgattgaccgagttctggacatcaaagaagaggaccaatggggtgacacggtt
gtaatgccttatgacgacacaacaacccctgggaaggtttcagtgagtggaggatggggt
atgactcagtgggaagcccccgctgaagaaaaggccaccactcctcctctcaactccgac
gccattactacgcccgtcactcgcacagttgtggatgaatccgaaaactttttcagtgcc
ttcctgtcaccaggagatgtcccagtgaccaaagcaaaagttgtgtctgtaccccctgta
aagtctcaaagacgaactcaagagacggagaagaaaagccaaggaggtttgctgcagatc
caaaacgaggatgggattgcagagccaacagaacctacagagcagagcgttgagggtcag
acagtggccgacggccagccggatgaggccgagtcctcaccagcagcgccttacactgat
gccatcctcctccagccagtctctccagttacctcccccggtgaccaccccttcagtcct
gactgtgtgaaaacggatgctgagtcggttccatcagaatccaaaacggagccggaacca
gaagatccacccgagcaacaggtagagacggattccccaaactcctctgagtctcctcct
tctgaagctaaaagctctaccccggcagatccctcaacccccacgtccaccaaggaagtt
ctcccgggtcaaaaagactccaaaccagaggaccgtcagaccgacacgccctctcctccg
gtcagcgctttctcctcaggaacttccaccacaagtgacattgaagtgctcgaccacgag
agcgtgcagagcgaaagctcggccagctccaggcaagaaaccggcgagagcaaaaccggg
cttcacctgatgcagggctcctttcagctcctcactgcctccacctgcggggatttcgct
cgactggaagactatcacaaactcacggagagctgcggctcctcctcggacgcgttcgag
cgcatcgattcgttcagcatgcagtcgctggacagccggagtgtcagcgaggtgaactcg
gacgacgagatccccggcagccggactctggcctccgtcacggcgggacccgctcccccg
acggagacgtgtccgaagcaggaggacggagcggaggagaacgctgccgaggagaacgac
ggcaaggaggagggatacgccgagacggggaaggagcagtcgctggacgagatggaggag
agcggaaggagcgcgactcctgtaaacagcgagcagccagatgagttgtgcgctggtgtt
gatgatgatgcgatgtttggttctacctgcaacgaagaagaaaagagcactccaccaatc
acagaagagatgaaaagtgtctcacctgcccagatactggagctgcaaaaggttattgat
gatctgtcaagccgccttgagaagagagagtctcagctgctggctgttagcaaagacaag
gccaggctggaggaggagtgcgacaatttaaaagatgaagtgataagcctgaaggaagag
agctccactgtgcagtccctgaaagacgagttcactcagcgcatagcagacgcagaaaga
aaggctcagctggcctgcaaggagagagacatcgccaaaaaggagatcaaaggcttgcga
gaagatcttagtacaagactgaactcgagtgatacgatggagctcatcagagagaaggag
gagcagatcagaggtctgctggaagagggtgaaaaactgtcgaaacagcagctgcaacac
agtaacatcatcaagaaactgcgtgtgaaggaaaaagagtgtgacagcaggattaccaag
cagcaaaagaaaatcaaggagcaagaggaggagcttaggcatctgcagcaggttctagac
gggaaggaggaggtggagaagcagcacagagagaacatcaggaagctgaacggtgtggtg
gagcagcaggagaaggagctgagcaggctgcagacggatgacgaggaactgcaggagaaa
aacaggagcctccaagctgccctagacagctcttataaagagctggcagagcttcacaag
gctcaggctagcagagcgagcgaggctgaagaggtggctctaagcagggaaatccaggcc
aaggagcagctgagtttagctcttgaaaaggctcaggaggaggccaggatccagcaggag
gcgcttgccaaccaggtggctgacctgaggatagctctgcagaggacggagcaacagcag
gccaggaaagaagattatttgagggaggagatcagtgagcttcagcagagactgcaggag
gcagagaccaggaaccaggagctcagccagagtgtcacctcagcaacgcggcctctgctg
cgacaaatcgagaacctacaagcctcgctgggcggccaaaccgcatcctgggagaaactg
gagaagaacatttccgataggctagcggacgcccagactcagctggctgtcgccgtggag
aaggagcgatcggcagcagaggaactgttgtccatcaagtcccagctggcttctttggaa
tcccagaattcctcggtccggcaggaaaaagccagagtcttggctcagctggaggcggag
aaaagcaaaagggagaaactggaggatgagagcagcagggagcatgcggaactaacaaac
ctgagaggagaacacagtcggatgctagaagaggccaagaaagaaaagctactgctgacc
aaccagctagagatggaaaagatgaaggtggagcaagagaagaagaaatgctatctcgca
caagaagcactgaaggaaaaggagcgtaaagctgtaacacactctgttggagatccgcca
gcggcttccacgccgtccttgtcccgctccagctctgttaacgggatggaaaacgctgga
ctgcacacctctgttctgtcgcaggatgactgtttggaccactcaatgggaacaatcacc
atgtcgatgagtggaaccaacctgtacgaggcagcaaggttgtctggaggctccagcatc
atggagaacctccagtcccagcttaaactgagagaaggagagatagctcagttgcagctc
gagatcgccagtttggagagaagtcgctcagtgatggcagaagagctggttcggctcaca
aatcaaaacgatgagatggaggagaaagtgaaggacatcccaaagttgaaaattcaactc
aaggatctggagcagaggcacaacaccatcctgcagatgtatggagaaaaggctgaggaa
gcagaggaactgaggctggaccttgaagatgtcaaaaatatgtataaaactcagattgat
gaattactaaagaatcagaaataa
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integrated database retrieval system
