Xiphophorus couchianus (Monterrey platyfish): 114135920
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Entry
114135920 CDS
T05908
Symbol
nfasc
Name
(RefSeq) neurofascin isoform X1
KO
K06757
neurofascin
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
114135920 (nfasc)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xco04515
]
114135920 (nfasc)
Cell adhesion molecules [BR:
xco04515
]
Immunoglobulin superfamily
L1 family
114135920 (nfasc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
Bravo_FIGEY
V-set
C2-set_2
Ig_DSCAM-DSCAML_C
Ig_4
Ig_6
Ig_VEGFR-1-like_5th
BiPBP_C
DUF3792
Motif
Other DBs
NCBI-GeneID:
114135920
NCBI-ProteinID:
XP_027859410
LinkDB
All DBs
Position
20:29301149..29405168
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AA seq
1389 aa
AA seq
DB search
MRAVGGREMLGKVGHAALTLLSLLLLWQEAAAIEVPLDPKIQQDLKQPPTIIKQSVKDYI
VDPRDNTIIIECEAKGNPVPTFSWRRSGRLFNIGKDPRVTMRKRSGTLEVGFRSGGRPED
YEGEYQCFATNELGVALSNKILLRVSKAPLWPKEVLAPVPVTEGSPLVLPCNPPPGLPPP
LIFWMDSNMIPIHQDRRVSMGLNGDLYFSNVLVQDAQNDYSCNARFNFTYTIQQKNPFNL
KVQTTEPYNDTSYNASDPFGGRKVAETPPSFLSPEGSGSSKMVLRDERLLLECIAAGLPT
PSIKWFKRGGDLPAQKVKFENFNKTLKILSVSEEDAGEYVCMADNRLGSIRHSIDVQVKA
APYWLDKPTNLVLAPEENGRLVCRANGNPKPNIQWLMNGEPINKITETPTSANREVLGDT
ILFRGVQIGSSAVYQCNASNQHGYLLANAFVSVLDMAPRMLGPKNQLIKVIMNNRTFLNC
PFFGSPLPELRWFKNGQGSGLDGGQYRVYVNGTLEIKRARKEDEGIYTCVANNMLGNAEN
QVQLEVKEPTRIIQAPTHQSVLRGSKASFHCKVVSDPSLPTKVTWTKDGERLDLGWRLKK
DEESLTIPSVSENDEGIYTCTVKSEIDQDSASARLTVLEDAFLNPSVFSALPPDRPDPPI
DLDLSDPSARSVRLTWIPGNDRRSPVTEFLVQFEENRWEPGRWQDLSSFPGDLNSVILQL
APNVNYQFRVIARNSVGRSQPSQPSPRYKTTAAPPDAIPRDLRGWGSDKDNMEITWEPLR
DLEKNGPNLQYNVWWRRKDSGDDWTNVTTSETKYVVRYTETYVPYEIKIQARNELGSGPE
SNIVIGYSGEDKPADSPSELRVLKVGSTRANIHWKPVDLSSVQGEFKEYRLYYWRESSLV
PGLVVSKEKKTTGFYTTVPEPSGILKDLVPYSKYKMFMVVANSRFESLPSNSVEFTTAEG
VPDAPRFFRINRRSLDTLYLEWDKPLEPNGILIGYQLVYQRVNGSRLGPQQIETFRPNVT
HFILRLPDRSARYKFNLSALTQVGTGEVYAEESPHFTNEENFTDATDVVELTDATLSSVF
SPTPTPLPPLPPTTIPPTTISITTPTPPPTTPPTTTTTEATTPSTVPVLVTTKRVDQNVL
VIPRREIWNLTVVPNSYYANVNWSHNFPADSKFVLEVTLDSNKTVTVEEVKQPPVNLKAL
IAGEKYHLRVYSQELNSVSSKSVTFKTKAAHIDQVDIATQGWFIGLMCAIALIILILLIV
CFIKRSRGGKYPSPGFLTGFTKYLVRDKKDLPLDPVDQKDQDGSFDYQNENENSSDEDNK
PLQGSQTSLDGNVKESDDSLVDYGEGGDGQFNEDGSFIGQYTVKKDKDETEGNESSEATS
PVNAIYSLA
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgcgggcagttggagggagagaaatgttgggaaaggttgggcatgcagccctgacgttg
ctgtcattactgctgctgtggcaagaagcggcagccatcgaagttcctctagatccaaag
atccagcaagacttgaagcagccccccaccataatcaaacagtcagtgaaggactacatc
gtcgaccccagagataacaccatcatcatagagtgtgaagccaagggcaacccagtgcca
acgttctcatggaggaggagtgggaggttgttcaacattggcaaagaccccagagtgact
atgagaaaacgctcaggaaccctggaggtaggattccgtagcggaggacgaccagaggac
tacgagggagagtaccagtgtttcgccacaaatgagctcggtgtggccctgtccaacaaa
atactgctccgcgtctccaaggccccgttatggcctaaggaagtgctggccccggtgccg
gtgactgaaggctcccctctggtcctaccctgcaacccaccacctggcctgcctcctcca
ttgatattctggatggacagcaacatgatccccatccatcaggataggagggtttccatg
ggtctgaatggagacctgtatttctccaatgttttggtccaagacgctcaaaatgactac
agctgcaacgctcgcttcaacttcacatacaccatccagcagaagaaccccttcaacctc
aaagttcagaccacggagccatataatgacacatcttacaatgcctctgatcccttcggt
ggccgcaaagtagcagaaacgccgccgtccttcctgtctcctgaagggagtgggagctcc
aaaatggtgctacgagatgagcgattgctgctggagtgtatcgctgctgggcttccgact
ccctccataaagtggtttaagagagggggagacctgccagcacaaaaggtgaagtttgag
aacttcaataagaccctgaaaattctcagtgtgtcagaggaggatgctggggagtatgtc
tgcatggcagacaaccgtctgggcagtatacgccattccattgatgtccaagttaaagct
gctccttactggttagacaaacccacaaacctggtgctggccccagaggaaaatggccgc
ctggtgtgtcgagccaacggcaaccctaagcccaacatccagtggcttatgaacggcgag
ccaataaacaagatcacagaaactccaacaagcgcaaacagagaagttctcggtgacacc
attctgttccgcggggtgcagattggaagcagtgcggtttaccagtgcaacgcctccaac
cagcacggctacctgctggccaacgccttcgtcagtgttctcgacatggctccacggatg
ctgggacccaaaaatcagttaatcaaagtcatcatgaacaaccgaaccttcctcaactgc
cctttctttggctctcctttacccgagcttcgctggtttaagaatggccagggcagtggg
ctggatgggggtcagtaccgggtctacgtcaacggcaccctggagataaaacgcgctcga
aaggaggatgagggcatctacacctgtgtggctaacaacatgttgggcaatgctgagaac
caggtccagctggaggtcaaagagcctactcgtattattcaagctcccacgcaccagtca
gttttgaggggctctaaagctagcttccactgtaaggtggtgtcggaccccagcctgccc
accaaggtgacgtggaccaaggacggagagcgcctggatctgggatggaggctgaagaag
gatgaagagtccctgaccatcccgtctgtcagtgagaacgatgagggaatttacacctgc
actgttaaatctgagatagaccaggactcagcctcagcccgcctcactgtcttagaggac
gccttcctcaacccctcagtctttagtgccttgcctccagaccgtccagacccaccaata
gatctggatctgtcagacccatcagcccgtagtgttcgcctcacttggattcctgggaac
gaccgcaggagccctgtcacagagttcttggtccagttcgaggagaaccgctgggagccg
ggcagatggcaggacctgtcctctttccccggagacctcaactctgtcatcctgcagctt
gcccctaatgtcaattatcagttcagggtcattgccaggaactcagtgggtcggagtcaa
cctagtcagccctcacctcggtacaaaaccaccgcggcacccccagatgccattcccaga
gatttacgtggttggggatccgataaggacaacatggagatcacctgggagccgctgcgc
gatctggagaaaaacggcccaaacctgcagtacaacgtgtggtggagacggaaagactcc
ggggacgactggaccaacgtgaccacgtctgagaccaaatacgttgttcgttacactgaa
acatatgtgccttacgagataaaaatccaggccaggaatgagttgggatcaggacccgag
tctaacattgtcatcggatattctggagaggacaagcccgctgattcaccctcggagctg
cgggtgttgaaggttggcagcaccagagcaaacatccactggaagcctgtagatctgagt
tctgtccagggggagttcaaagagtacagattgtactactggcgcgagtccagtctggtt
ccagggctggtggtgagcaaggagaagaagaccactgggttctacacgactgtgccagag
ccgtctgggattctcaaagacttggtgccctactctaaatataagatgttcatggttgtg
gccaacagtcgctttgagagtctacccagcaacagtgtggaattcaccactgcggagggc
gttccggatgctcccaggttcttcaggattaaccgcagaagtctggacacactctacttg
gaatgggacaaaccattagaacccaacggcattctaattggataccaactcgtataccag
agagtgaacgggtccagactgggtccccagcagatcgagacgttccgtcccaacgtgaca
cacttcatcctgcgcctgccggaccggtccgctcgctacaagttcaacctgtcagcgctc
acccaggtgggaacgggagaggtctatgccgaggagtcgccgcactttaccaatgaagaa
aactttactgatgctacagatgtagttgagcttacggacgccaccctgtcttctgttttc
tctcctactcccactcctcttcctccccttcctcctactaccattcctcccacaacaatt
agtatcacaactcctacccctcctccaacaacccctcctactactactaccactgaggca
actacaccctccacagttcctgtgctggtcaccaccaaacgagttgatcagaatgtcttg
gtaatccctcggcgggagatctggaatctgacggtggtccccaacagttactacgctaac
gtcaactggagtcacaacttcccagctgacagcaagtttgttctagaggtcactctggac
agcaacaagacagtgacagttgaagaggtgaaacagccgcccgttaatctgaaggctctg
atcgctggtgagaagtaccatctgagggtttactcccaagagctcaacagtgtcagcagc
aaatctgtcacctttaaaactaaagcagctcacatagaccaggtagacatagccactcag
ggctggttcattggcttgatgtgtgccattgccctcattatactgatcctcctcattgtc
tgcttcatcaagaggagtcgtggaggcaaatacccaagtcccggcttcttgactggtttc
acaaaatacctcgttcgtgacaaaaaggatcttcccctggatccagtggatcagaaagat
caggatggatcctttgattaccagaacgaaaatgaaaacagcagcgacgaggacaacaag
cctctgcagggcagccagacttcgctggacggcaacgtgaaggagagcgacgacagcctc
gtggactacggcgaaggcggcgatggccagttcaacgaggacggctccttcatcggccag
tacacggtgaagaaggacaaggacgagacggagggaaacgagagctccgaggccacctct
cctgtcaacgccatctactcgctggcgtag
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