Xiphophorus couchianus (Monterrey platyfish): 114136504
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Entry
114136504 CDS
T05908
Symbol
taf4
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
114136504 (taf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xco03021
]
114136504 (taf4)
03036 Chromosome and associated proteins [BR:
xco03036
]
114136504 (taf4)
Transcription machinery [BR:
xco03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
114136504 (taf4)
Coactivators
SAGA/TFTC/STAGA complex
114136504 (taf4)
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
114136504 (taf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
AAA_23
DNA_pol3_gamma_R_C
Motif
Other DBs
NCBI-GeneID:
114136504
NCBI-ProteinID:
XP_027860348
LinkDB
All DBs
Position
1:21207019..21219103
Genome browser
AA seq
853 aa
AA seq
DB search
MDGTAGITSAAETIPTAAKSHFGSLTTSGAVTGASGATAGGDKQQATGAPALDGNGAVMN
CHIPGSGQSDSSQTAVVNGPASASPGFIIRTNPSAQNTSTSSGSSSQPAEKTVPTVALVR
PPMQTSANETQSTESPNTVLSSGSGSVSCKTEPTKNITQAGAQVLPSGVLSATMRNPTVL
QNLRTTLSSTISAAPPGGIRTIAPQVLAPRLTQPQQNATSIQNIQIPAGMVLVRSESGQL
LMIHQQTLAQMQAQAQSQSATTPRPAAPPSTPPVQVTSLQTPGGPLLARSVTPTTIIKQG
SPVQTTVATTTTLQRPPVLQNTIILGGNATSTGQALGTPTTVQATAAVTQRVGPLGVTGV
PVTPTTITAETLENVKKCGNFLSTLIKLASNGKQSSETTATVKELVRNLLEGKIEPEDFT
SRLYKELNSSPQPYLVPFLKRSLPALRQMTPDPEAFIHQSLLSQPSSQPAAATSPALGAV
VLRPSLSPAVSAATGSTTTKATVITLSQKANSKPGLVVAQQQVRPQVTLAQSPLVTIRGA
APSRIIVGQPQMVRHTPQGSVVKQNVAPGTRGVQLLNQASLVDAQRNKLKEAGGGTFKDD
DDINDVASMAGVNLSEENARIMASSSELVGIVTRSCKDEAFLSISSLTRIVLQIGKKFGV
SELGTDVINYISHATQQRLQNLLENASQVAQLKNLNFKEDERCEQVSDVRAQLKFFEQLD
QMEKQRKEEQEREILLKAAKSRSRQEDPEQLRLKQKAKEMQQLELAQIRQREANLTALAA
IGPRKKRRTDSPLSASAEGSGLGSSQPGGSSGQGSRQFMRQRITRVNLRDLLLCLENDRD
SSHSQLLYQGLLK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggacgggacagctgggatcacatcggcggctgaaacaatcccgactgccgcgaagagt
cacttcggttcactgacaacaagcggagcagttacgggagcatcaggtgcaacagctggg
ggtgacaaacaacaagcgactggtgctccagctttggatggaaacggcgcggtgatgaac
tgtcacatccccggaagcgggcagtcagacagctcacagacagctgttgtgaatggaccc
gcttctgcctctcctggttttattattcgaactaatccgagtgcacaaaatacttcgacc
tcatctgggagttcgtctcagcctgctgagaaaactgttcccacagtggcgcttgtaagg
ccacctatgcaaacttctgctaacgagactcaaagtacagaaagcccaaatacagtcttg
tcatcagggagcggtagtgtttcctgcaaaactgaacccactaaaaatataactcaagcc
ggtgctcaggtcctgccttcgggtgttttgtctgcgaccatgaggaatccgactgttctg
caaaacttgaggactacattgtcgtcaacgatcagtgccgctccgccaggaggaatacgg
accattgctccacaggtgttggctcctcgactcactcagcctcaacaaaacgctacaagt
atccaaaacatccaaatccctgcaggcatggtgttggttcgcagtgagagtgggcagctg
ctgatgattcaccagcagaccttggctcagatgcaggctcaggcacagtcacaaagcgca
acgacgccacgacctgcagccccccccagcactccacctgtccaggtcacatctcttcag
actccaggaggtcctctgctggctcgctccgtaaccccgacgaccatcatcaaacagggt
tccccagttcaaaccacagtagcaaccacaaccaccctccagagacctcctgttctgcag
aataccatcatacttggaggaaatgccacttccacgggacaagctcttggaacgccaacc
acagtgcaggcaactgcagcagtaactcagagggtggggccccttggggtcactggggtg
cccgtcactccaacaaccatcacagctgaaacactggagaatgtgaaaaagtgtggaaac
tttctgtctacactcatcaagttagcatccaatggaaaacagtcatctgagactacagcc
actgtcaaggagcttgttaggaatttgctggaaggaaagatagagcctgaggatttcacc
agcaggttgtacaaggagcttaattcttctcctcagccataccttgtaccttttcttaag
agaagtcttccggcgttgcgtcaaatgaccccagatcctgaggccttcatccatcaaagc
ttgctgtcccagccaagcagtcagccagctgcagcaacctctccagcccttggcgctgtg
gttctgcgtccttctctttcgcctgcagtcagcgcggccacaggctctaccacgaccaag
gccacagtcatcaccctctctcagaaagccaacagtaaacctggactggttgtggcccag
cagcaggtgaggccacaggtgaccctggctcagtctcctttggtaacgatcagaggagca
gctcccagccgcatcattgtgggtcaaccacagatggtcagacacactccacaaggttct
gtggtgaagcaaaatgtggctccagggaccagaggagttcaactactcaaccaggcatcc
ctcgtcgatgctcagaggaacaagctaaaggaagcaggaggggggactttcaaagatgat
gatgatatcaacgacgtggcttccatggcaggggtcaacttatccgaggagaatgcccgc
atcatggccagcagctctgaacttgttggcatcgtgactcggtcttgtaaggatgaggct
ttcctctccatctcctctctcacccggatagttctgcagattggtaagaagtttggtgtc
agtgaattgggcacagatgtgatcaactacatttcccatgctacacaacagcgactgcag
aacctgttggaaaacgcttcacaagtggcacaactgaagaatttaaattttaaggaggac
gagcggtgtgagcaggtcagtgacgtgcgagctcagctcaaattctttgagcagctggat
cagatggagaagcaaaggaaggaggagcaagagagagagatcctgctgaaggctgccaag
tctaggtcacggcaagaagacccagaacagctcagactgaaacagaaggccaaagagatg
cagcagctggagttggctcagatcaggcagagagaagccaacctaacagcgttggcagca
atcggcccgaggaaaaaacggagaacagactcccctttaagtgcgagtgcagagggttca
gggttgggatcctcccagcctggaggctccagtggacagggctccagacagtttatgcgc
cagcgcatcaccagagttaacctccgggacctgctcttatgtctggagaatgacagagac
tccagtcactcccagctactctaccaaggtctcctcaaataa
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