Xiphophorus couchianus (Monterrey platyfish): 114136523
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Entry
114136523 CDS
T05908
Name
(RefSeq) hemicentin-1-like isoform X1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
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Gene cluster
GFIT
Motif
Pfam:
Ig_2
Ig_3
ig
I-set
C2-set_2
Ig_7
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
114136523
NCBI-ProteinID:
XP_027860334
LinkDB
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Position
21:16780660..16832567
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AA seq
2835 aa
AA seq
DB search
MDLRRTEKAAALLVVPVREMKKLCHLSNSILMVSILLIVFFLPGALAHCGDAIPNLHLTT
PREIEALIGSCVEIPCIFDTLPEFNSSAPTYGIWMKHRGVYIVGASEIIFNSSGSINTHR
MEMIGDVRSKNCSSRLGEAEVGHEDKFYFRVHNSGMSATYCDDFVELKLKDSPWTPSIVV
SGSDLKERQSVTITCSVYTPCLPSPPELTWNLKKNSRRQIEKVVDGTFTSKLQETITLSD
KHDGYNIKCSARYPVKGGFQQSPETVETLSVSYAPKDTKASISSSGLVSAGSRVVLSCSS
RAKPPPSFTWYRNNKDGANVVSTEQRYSFSATPAEKGDYYCKATNGVDSETSTNICIDII
DAHFTPSISISVGDLRERQSVTITCSVATPCPQSQPEFTWNLQQDSLRRTEKNTEGTFTT
KIQKKITLSHKHDGYNISCSARHPADKNGNAAKAEVTLSVSYAPRNTSVSISKSSGSWVE
LSCSSRGKPPPKITWFKKGPKKFTKVATGNFHKDTFTDGDQYYCVAANKLGKQKSSPISL
TVKGISGAWVFALKATLGMAALGSTGFFIDKGWTDVNHQLDLLSSSLIVCCEVNLMDLRR
TEKAAVLLVVPVREMKKLCHLSNSILMVSILLIVFFLPGAFAHCGRVLNQHMYTPREMEA
LIGSCVEIPCKFGTLKGYDNSKPTYGIWMKHMPVYDVGASEIIFNSSGSINTHQMEMIGD
LRRKNCTTRIPDVKADLTDKYFLRIENGEAKATFCEDPFKLTVIDSPWTPSIVVFGSDLK
ENQSLTITCSAHTPCLPSPPELTWNLKKDSLGQILKKTDGTFATKLQETITLSDKHDGYN
ISCTARYPVKGGFKQSASVRTLNVSYAPKDTSATTSPSYLVSKGSRVALSCSSRGNPPIT
SYTWFKHRKRGDIKLSVAPVYSFFATERANYYCEAKNTFGSERSKTICIDIIDAPLTPRI
DIPFGDLKENQSVTITCSASTPCPQSPPKLTWNLQQDSLRQTERNADGTFTTKIQKNITL
SDTHDGYNIRCSSRHPAAEKSNIAAKTEVTLSVSYAPRNTSASISQSDLVSAGSRVELSC
SSRAKPPPSFTWFRNSGRGFIKVASVFSMSFNAAERGDYYCEATNRLGSEKSKRICLDLI
DAPLTPRIDIPFGDLKEGQSVTVTCSASTPCPLSLPELTWNLQQDSLRQTEKNTEGIFTT
KIQKNITLSDTHDGYNIKCSSRHPAAEKSNKAKTKVTLSVSYAPRNTSASISPSALVSAG
SRVELSCSSRAKPPPNFTWFRNSGRGFITVASVFSMSFNAAERGDYYYAPLTPRIDIPFG
DLKEGQSVTITCSASTPCPLSLPELTWNLQQDSLRQTEKNTDGTFTTKIQKNITLSDTHD
GYNIRCSSRHPAAEKSNTAKTEVTLNVPYAPRNTSASISPSGLVSAGSRVELSCSSRAKP
PPSFTWFRNSGRGFIKVASVFSMSFSAAERGDYYCEATNRLGSEKSKRICLDLIDAPLTP
RIDIPFGDLKEGQSVTITCSASTPCPLSLPELTWNLQQDSLRQTEKNTDGIFTTKIQKNI
TLSDTHDGYNIRCSSRHPAAEKSNIAKTEVTLSVSYAPKDTSATISPSYLVSKGSRVALS
CSSRGNPPITSYTWFKHRKRGDIKLSVAPVYSFFATERANYYCEAKNTFGSERSKTICID
IIDALLIPHFNIPFGDLKEGKSVTIKCSASTPCPQSPPELTWNLQQDSLRQTEKNTDGTF
TTKIQKNITLSDTHDGYNIICSSRHPAAEKKRTAKTEVTLSVPYAPRNTSASISPSALVS
AGSRVELNCSSRAKPPPSFTWFRNSGRGFITVASVFSMSFIAAERGDYYCEATNRLGSEK
SKRICLDLIDAPLTPRIDIPFGDLKEGQSVTITCSASTPCPLSLPELTWNLQQDSLRQTE
KNTEGIFTTKIQKNITLSDTHDGYNIRCSSRHPAAEKSNIAKTEVTLSVPYAPRNTSASI
SPSALVSAGSRVELSCSRRAKPPPSFTWFRNSGRGFIKVASVFSMSFNAAERGDYYCEAT
NRLGSEKSKRICLDLIDAPLTPRIDIPFGDLKEGQPVTVTCSASTPCPLSLPELTWNLQQ
DSLRQTEKNTEGIFTTKIQKNITLSDTHDGYNIRCSSRHPAAEKSNIAKTEVTLNVPYAP
RNTSASISPSGLVSPGSRVEMSCSSRAKPPPSFTWFRNSGRGFIKVASVFSMSFSAAERG
DYYCEATNRLGSEKSKRICLDLIDAPLTPRIDIPFGDLKEGQSVTITCSASTPCPLSLPE
LTWNLQQDSLRQTEKNTDGTFTTKIQKNITLSDTHDGYNIRCSSRHPAAEKSNKAKTEVT
LNVPYAPRNTSASISPSALVSAGSRVELSCSSRAKPPPSFTWFRNSGRGFIKVASVFSMS
FNAAERGDYYCEATNRLGSEKSKRICLDLIDAPLTPRIDIPFGDLKEGQPVTITCSASTP
CPLSLPELTWNLQQDSLRQTEKNTEGIFTTKIQKNITLSDTHDGYNIKCSSRHPAAEKSN
IAKTEVTLSVSYAPRNTSASISPSALVSVGSRVELNCSSRAKPPPSFTWFRNSGRGFIKV
ASVFSMSFNAAERGDYYCDSTNELGSEKSTSICIDIGDAPLTPRISISTWNLREGQSVIV
TCSASTLCPHSLPELTWNLQQDSLRHTERNADGTFTTKIQKTITLSDTHDGYNIKCFTRH
PAARKSNAATTEVALSVSYAPRNTSASISPPEGNWVDLSCSSRAKPPPKITWFKKGPEST
TEVATGNFHKVKFTDGDQYYCVAENKVGKQKSSPINLTVKGTNGLGAWILAIIGAVGMVL
LGSTVFILDTWFIHS
NT seq
8508 nt
NT seq
+upstream
nt +downstream
nt
atggacctacgacgaacagagaaagctgcagctcttttggttgttccagtcagagagatg
aagaagctctgtcacctgtctaacagcatcctgatggtcagcattttactgattgtcttc
tttcttccaggtgctttagctcattgcggtgatgctataccaaacctccacctcactaca
ccccgtgagattgaagctctgattggatcttgtgtggaaatcccatgtatatttgatact
ttgccagaatttaacagcagcgcacccacttacggaatctggatgaaacataggggggta
tatattgtgggagcaagtgaaattatttttaatagcagtgggtcaattaacacccatcga
atggaaatgattggagatgtgagaagtaaaaactgcagcagtcgacttggtgaggcagaa
gtaggtcatgaagacaaattctacttcagagttcacaactcggggatgtctgcaacatat
tgtgatgattttgttgagctaaaacttaaagattctccttggactcccagcattgttgtt
tctggaagtgatctgaaggagcgtcagtctgtcactataacctgctcagtttatactccc
tgtttaccatcacctcctgaactcacctggaatctcaaaaaaaactctcgcagacaaata
gagaaagtagttgatggaacctttacatctaaactccaggagaccatcactctgtcagac
aagcatgatggatacaacatcaaatgttctgctagatatcctgtgaaaggaggtttccaa
cagtcaccagagacagtagagactctcagtgtttcatatgctcctaaagacactaaagcc
tccatcagttcatcaggtttggtgtcagcaggtagtcgggtggtgctgagctgctccagc
agagccaaacctccacccagcttcacctggtacaggaacaacaaagatggagccaatgta
gtgtcaacggagcagcgttacagcttcagtgctactcctgctgaaaaaggagactattac
tgtaaggccacaaatggggtggatagtgagacatcgacaaacatctgtattgacatcatt
gatgctcattttactcccagcattagtatctctgttggtgatctgagggagcgtcagtct
gtcaccataacctgctcagttgcaactccctgtccacaatcacaacctgaattcacctgg
aatctccaacaagactctctcagacgaacagagaaaaacacagagggaacctttacaact
aaaatccagaagaagatcactctgtcacacaaacatgatggatacaacatcagctgttct
gccagacatcctgcggataaaaatggcaacgcagcaaaggcagaagtgactctcagtgtt
tcatatgctcctagaaacacttcagtgtccatcagtaaatcatcaggtagctgggtggag
ctgagctgctccagcagaggcaaacctccacccaaaatcacctggttcaagaaaggcccc
aaaaaattcactaaagtagctacaggcaactttcacaaggatacattcactgatggcgat
caatactactgtgtagctgcaaataagctgggaaaacagaaatcatcaccgatcagtctc
acagtaaaaggtatatcgggagcctgggtttttgcattaaaagcaaccttgggaatggca
gcacttggcagtacagggttcttcattgacaagggctggactgatgttaaccaccagctt
gaccttctctcttccagcttgattgtgtgttgtgaagtcaacctgatggacctacgacga
acagagaaagctgcagttcttttggttgttccagtcagagagatgaagaagctctgtcac
ctgtctaacagcatcctgatggtcagcattttactgattgtcttctttcttccaggtgct
tttgctcattgtggtcgtgttctaaaccagcacatgtatacaccacgtgagatggaagct
ctgattggatcttgtgtggaaatcccatgtaaatttggtactttgaaaggatatgacaac
agcaaacccacttacggaatctggatgaaacatatgccggtatatgatgtgggagcaagt
gaaattatttttaacagcagtgggtcaattaacacccatcaaatggaaatgattggagat
ttgagaaggaaaaactgcaccactcggattcctgatgtaaaagcagatcttacagacaag
tacttcttaagaattgagaacggggaagcgaaagcaacattttgtgaagatccttttaag
ttaacagttatagattctccttggactcccagcattgttgtttttggaagtgatctgaag
gagaatcagtctctcactataacctgctcagctcatactccctgtttaccttcacctcct
gaactcacctggaatctcaaaaaagactctctcggacaaatactgaaaaagactgatgga
acctttgcaactaaactccaggagaccatcactctgtcagacaagcatgatggatacaac
atcagctgtactgctagatatcctgtgaaaggaggattcaaacagtcagcgtcagtaagg
actctcaatgtttcatatgctcctaaagacacctcagcaaccaccagtccatcatatttg
gtgtcaaaaggtagcagggtggcgttgagctgctccagcagaggcaaccctcccattacc
agctacacctggttcaagcaccgcaaacgtggagacattaaattatctgtggcgccggtt
tacagcttctttgctactgagcgagcaaactattactgtgaggccaaaaatacttttggt
agtgagagatcgaaaaccatctgtattgacatcattgatgctcctttgactcccagaatt
gatatcccttttggtgatctgaaggagaatcagtctgtcactataacctgctcagcttca
actccctgtccacaatcacctcctaaactcacctggaatctccaacaagactctctcaga
caaacagagagaaacgcagatggaacctttacaactaaaatccagaagaacatcactctg
tcggacacacatgatggatacaacatcagatgttcttccagacatcctgcggctgaaaaa
agcaacatagcagcaaagacagaagtgactctcagtgtttcatatgctcctagaaacacc
tcagcatccatcagtcaatcagatttggtgtcagcaggtagcagggtggagctgagctgc
tccagcagagccaaacctccacccagcttcacctggttcaggaacagcggacgtggattc
attaaagtggcttcagtgttcagtatgagcttcaatgctgctgagcgaggagactattac
tgtgaggccacaaataggcttggtagtgagaaatcgaaacgcatctgtcttgacctcatt
gatgctcctttgactcccagaattgatatcccttttggtgatctgaaggagggccagtct
gtcactgtaacctgctcagcttcaactccgtgtccactctcacttcctgaactcacctgg
aatctccaacaagactctctcagacaaacagagaaaaacacagagggaatctttacaact
aaaatccagaagaacatcactctgtcagacacacatgatggatacaacatcaaatgttct
tccagacatcctgcggctgaaaaaagcaacaaagcaaagacaaaagtgactctcagtgtt
tcatatgctcctagaaacacctcagcatccatcagtccatcagctttggtgtcagcaggt
agcagggtggagctgagctgctccagcagagccaaacctccacccaacttcacctggttc
aggaacagcggacgtggattcattacagtggcttcagtgttcagtatgagcttcaatgct
gctgagcgaggagactattactatgctcctttgactcccagaattgatatcccttttggt
gatctgaaggagggccagtctgtcactataacctgctcagcttcaactccgtgtccactc
tcacttcctgaactcacctggaatctccaacaagactctctcagacaaacagagaaaaac
acagatggaacctttacaactaaaatccagaagaacatcactctgtcagacacacatgat
ggatacaacatcagatgttcttccagacatcctgcggctgaaaaaagcaacacagcaaag
acagaagtgactctcaatgttccatatgctcctagaaacacctcagcatccatcagtcca
tcaggtttggtgtcagcaggtagcagggtggagctgagctgctccagcagagccaaacct
ccacccagcttcacctggttcaggaacagcggacgtggattcattaaagtggcttcagtg
ttcagtatgagcttcagtgctgctgagcgaggagactattactgtgaggccacaaatagg
cttggtagtgagaaatcgaaacgcatctgtcttgacctcattgatgctcctttgactccc
agaattgatatcccttttggtgatctgaaggagggccagtctgtcactataacctgctca
gcttcaactccgtgtccactctcacttcctgaactcacctggaatctccaacaagactct
ctcagacaaacagagaaaaacacagatggaatctttacaactaaaatccagaagaacatc
actctgtcagacacacatgatggatacaacatcagatgttcttccagacatcctgcggct
gaaaaaagcaacatagcaaagacagaagtgactctcagtgtttcatatgctcctaaagac
acctcagcaaccatcagtccatcatatttggtgtcaaaaggtagcagggtggcgttgagc
tgctccagcagaggcaaccctcccattaccagctacacctggttcaagcaccgcaaacgt
ggagacattaaattatctgtggcgccggtttacagcttctttgctactgagcgagcaaac
tattactgtgaggccaaaaatacttttggtagtgagagatcgaaaaccatctgtattgac
atcattgatgctcttttgattccacactttaatatcccttttggtgatctgaaggagggc
aaatctgtcactataaaatgctcagcttcaactccctgtccacaatcacctcctgaactc
acctggaatctccaacaagactctctcagacaaacagagaaaaacacagatggaaccttt
acaactaaaatccagaagaacatcactctgtcagacacacatgatggatacaacatcata
tgttcttccagacatcctgcggcagagaaaaaacgtacagcaaagacagaagtgactctc
agtgttccatatgctcctagaaacacctcagcatccatcagtccatcagctttggtgtca
gcaggtagcagggtggagctgaactgctccagcagagccaaacctccacccagcttcacc
tggttcaggaacagcggacgtggattcattacagtggcttcagtgttcagtatgagcttc
attgctgctgagcgaggagactattactgtgaggccacaaataggcttggtagtgagaaa
tcgaaacgcatctgtcttgacctcattgatgctcctttgactcccagaattgatatccct
tttggtgatctgaaggagggccagtctgtcactataacctgctcagcttcaactccgtgt
ccactctcacttcctgaactcacctggaatctccaacaagactctctcagacaaacagag
aaaaacacagagggaatctttacaactaaaatccagaagaacatcactctgtcagacaca
catgatggatacaacatcagatgttcttccagacatcctgcggctgaaaaaagcaacata
gcaaagacagaagtgactctcagtgttccatatgctcctagaaacacctcagcatccatc
agtccatcagctttggtgtcagcaggtagcagggtggagctgagctgctccaggagagcc
aaacctccacccagcttcacctggttcaggaacagcggacgtggattcattaaagtggct
tcagtgttcagtatgagcttcaatgctgctgagcgaggagactattactgtgaggccaca
aataggcttggtagtgagaaatcgaaacgcatctgtcttgacctcattgatgctcctttg
actcccagaattgatatcccttttggtgatctgaaggagggccagcctgtcactgtaacc
tgctcagcttcaactccgtgtccactctcacttcctgaactcacctggaatctccaacaa
gactctctcagacaaacagagaaaaacacagagggaatctttacaactaaaatccagaag
aacatcactctgtcagacacacatgatggatacaacatcagatgttcttccagacatcct
gcggctgaaaaaagcaacatagcaaagacagaagtgactctcaatgttccatatgctcct
agaaacacctcagcatccatcagtccatcaggtttggtgtcaccaggtagcagggtggag
atgagctgctccagcagagccaaacctccacccagcttcacctggttcaggaacagcgga
cgtggattcattaaagtggcttcagtgttcagtatgagcttcagtgctgctgagcgagga
gactattactgtgaggccacaaataggcttggtagtgagaaatcgaaacgcatctgtctt
gacctcattgatgctcctttgactcccagaattgatatcccttttggtgatctgaaggag
ggccagtctgtcactataacctgctcagcttcaactccgtgtccactctcacttcctgaa
ctcacctggaatctccaacaagactctctcagacaaacagagaaaaacacagatggaacc
tttacaactaaaatccagaagaacatcactctgtcagacacacatgatggatacaacatc
agatgttcttccagacatcctgcggctgaaaaaagcaacaaagcaaagacagaagtgact
ctcaatgttccatatgctcctagaaacacctcagcatccatcagtccatcagctttggtg
tcagcaggtagcagggtggagctgagctgctccagcagagccaaacctccacccagcttc
acctggttcaggaacagcggacgtggattcattaaagtggcttcagtgttcagtatgagc
ttcaatgctgctgagcgaggagactattactgtgaggccacaaataggcttggtagtgag
aaatcgaaacgcatctgtcttgacctcattgatgctcctttgactcccagaattgatatc
ccttttggtgatctgaaggagggccagcctgtcactataacctgctcagcttcaactccg
tgtccactctcacttcctgaactcacctggaatctccaacaagactctctcagacaaaca
gagaaaaacacagagggaatctttacaactaaaatccagaagaacatcactctgtcagac
acacatgatggatacaacatcaaatgttcttccagacatcctgcggctgaaaaaagcaac
atagcaaagacagaagtgactctcagtgtttcatatgctcctagaaacacctcagcatcc
atcagtccatcagctttggtgtcagtaggtagcagggtggagctgaactgctccagcaga
gccaaacctccacccagcttcacctggttcaggaacagcggacgtggattcattaaagtg
gcttcagtgttcagtatgagcttcaatgctgctgagcgaggagactactactgtgattcc
acaaatgagcttggtagtgagaaatcgacaagcatctgtattgacatcggtgatgctcct
ttgactcccagaattagtatctctacttggaatctgagggagggccagtctgttattgta
acctgctcagcttcaactctctgtccacactcacttcctgaactcacctggaatctccaa
caagactctctcagacacacagagagaaacgcagatggaacctttacaactaaaatccag
aagaccatcactctgtcagatacacatgatggatacaacatcaaatgtttcaccagacat
cctgcggctagaaaaagcaacgcagcaacgacagaagtggctctcagtgtttcatatgct
cctagaaacacctcagcatccatcagtccaccagaaggtaactgggtggacctgagctgc
tccagcagagccaaacctcctcccaaaatcacttggttcaagaaaggcccggaaagtacc
actgaagtagctacaggcaactttcacaaggttaaattcactgatggcgatcaatactac
tgtgtagctgaaaataaggtgggaaaacagaaatcatcaccgatcaatctcacagtaaaa
ggtacaaacggacttggagcctggattcttgcaataataggggccgtgggaatggtactt
cttggcagtacagtcttcatccttgacacctggttcattcactcctaa
DBGET
integrated database retrieval system
