Xiphophorus couchianus (Monterrey platyfish): 114136906
Help
Entry
114136906 CDS
T05908
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114136906 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114136906 (pan3)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114136906 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
114136906 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
114136906
NCBI-ProteinID:
XP_027861114
LinkDB
All DBs
Position
21:complement(11552964..11571422)
Genome browser
AA seq
792 aa
AA seq
DB search
MNSGLPPSAAPLGGAGIPSVKVKFCRYYAKDKTCFYGDECQFLHEDPSMGSMSLHGGGGS
PVPLPMAGGGGTPAGYSLGGTATVCPGGGGTGVSKKSEALGPAGTALEGQLLTIPGMEGP
ALSDANLTNSYFSSSFIGVNGFGSPAESKYTMMQRMTTSSSSPSLLNDSAKNFSHSTHDP
VNSSTSSLFSDFGALSISQRRKAPNPTASEFIPKGAPRMAAMTQSAVQPFPSPLFAHPGL
GGSTAALAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPANYMVPTTAADQGAHIIQ
KETVGGTTYFYTDNTPVPMAGMVFPTFHIYPPTAPHVAYMQPKANAPSFFMADELRQELI
HRHLITMAQIDHSENPEVPSEVDSYHSLFPLEPLPPPNRMQKTSNFSYITSCYKAVNSKD
DLPYCLRRIQGFRLVNTKCMMLVDMWKKIQHSNTVTLREVFTTKAFGDHSLVFSYDFHAG
AETMFSRHFNDPAADSYFTKRKWGQHEPPPPRQHAGLLPESLIWAYIVQLSSALRTIHTA
GLACRVMDPSKILITGKTRLRVNCVGVFDVLTFDNSQTNHLALMPQYQQADLVSLGKVVL
ALACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTDQSRLRSVNDIMPMIGARFYT
QLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPAWSETGDRYLLKLFR
DHLFHQVTEAGTPWIDLSHIVSCLNKLDAGVPEKISLVSRDEKSVLVVTYSDLKRCFDST
FQELQAAAAGSL
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcggacttccaccttccgctgctccgctcgggggtgccgggatacccagtgtc
aaggtgaagttttgccgatactacgcaaaagacaaaacctgcttttacggagatgagtgc
cagttcctgcacgaggatccctccatgggaagcatgtcgctgcacggaggtggcggcagc
cccgtcccgctgcccatggccggaggtggcgggacgccagcggggtattccctcggtggt
acggcgacggtctgcccaggcggtggagggaccggagtgtccaagaaaagcgaagcacta
gggcctgcaggcacggctttagaggggcagctgctaaccatcccagggatggagggtcct
gcccttagcgacgccaatctcaccaactcttatttcagcagcagcttcattggtgtcaat
gggtttggaagccctgcagagtcgaaatatacaatgatgcagcgaatgactacaagcagc
agctctcccagtcttctcaatgatagtgccaagaatttcagccacagcactcatgatcca
gtaaactcctcgacttcgtcactgttcagtgattttggtgctcttagcatttcccagagg
agaaaggctcctaaccccactgcgagtgagttcatccctaagggcgctccgcgaatggct
gccatgacgcagtctgcagttcagcccttcccttctccgctctttgctcatcctggtctc
ggtggctccacagctgctttggcaccaggcatgtctttgtctgctgggtcatctcctctg
cactccccaaagatcacacctcacacctcacctgcccctcgtcgacggagtcacaccccg
aaccccgctaactacatggtgcccaccactgcggccgaccagggcgcccacatcattcag
aaagagaccgtaggggggacaacgtacttctacacagataacaccccagtaccaatggca
gggatggtgtttcctaccttccatatctacccccccactgccccccatgtggcttacatg
cagccgaaagccaatgccccgtccttcttcatggctgatgagctccgacaggagctgatt
cacaggcacctgataaccatggcccaaatcgaccactcagagaacccagaagtaccgtct
gaagtggacagctaccacagcctgtttcccctcgagcctctccccccgccgaaccgcatg
cagaaaaccagcaatttcagctacatcacctcctgctacaaggcggtcaacagcaaggat
gacctgccatactgcctgaggaggatacaaggtttccgccttgttaatacaaagtgtatg
atgctggtcgacatgtggaagaagattcagcactcgaacacggtgacacttagagaggtc
ttcaccacaaaggcctttggagaccactcattggtcttctcatacgacttccatgcaggt
gcagaaacgatgttcagcaggcattttaatgacccagcggcagactcatacttcacaaag
aggaagtgggggcaacacgaacctccgccgccacggcagcatgcaggccttctgccggag
tcgcttatctgggcctacatcgtccagctaagctcggccttgcggaccatccacacggct
ggtcttgcctgtcgggtcatggaccccagcaagatactcatcactggtaaaaccaggtta
cgggtgaactgtgttggggtgtttgatgtcttaacgtttgacaacagtcagaccaatcat
cttgccctgatgccgcagtaccagcaagcagatctagtttctctgggcaaggtggtgctg
gctttggcctgtaattcgctggctggaatccagagggagaacctgcagaaggccatggag
ctggtttctataaactactcttcagacctcaagaaccttattctgtatcttctgactgat
cagtctcggctgcgcagcgtcaatgacatcatgccaatgattggagcacgattctacaca
caactcgatgcatcgcagatgagaaatgatgtcatcgaagaggaccttgccaaggaggtg
cagaatggtcgccttttccgcctgcttgccaaactgggaaccatcaacgagcggccagag
tttcagaaagacccggcgtggtcggagaccggcgaccgctacctgctgaagcttttccgg
gatcatctgttccaccaggtgacggaggcggggacgccgtggattgacctcagccacatt
gtctcctgcctcaacaaactggacgcaggtgttcctgagaagatcagcttggtgtcccgg
gatgagaaaagcgtcctggtggtcacttattcggacctgaagcgctgcttcgacagcacc
ttccaggagctgcaggccgcagccgctggctctctgtag
DBGET
integrated database retrieval system
