Xiphophorus couchianus (Monterrey platyfish): 114136946
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Entry
114136946 CDS
T05908
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1-like
KO
K10630
RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:
2.3.2.31
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04217
Necroptosis
xco04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
114136946
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
114136946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114136946
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
114136946
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
114136946
Multi subunit type E3
LUBAC complex
114136946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
zf-RING_2
zf-RING_5
IBR_1
ubiquitin
Motif
Other DBs
NCBI-GeneID:
114136946
NCBI-ProteinID:
XP_027861183
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All DBs
Position
21:14146837..14157829
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AA seq
705 aa
AA seq
DB search
MSLSSGGWTHSPGLTPDQSTALTSSYEASQAQPGCQTVLMSVRVSVCHSGVRPLCLPGAG
DESLRLQLSMDPGKSGEFRLAIQSTSGTGQSVTINEFDLRSINYEVKSPKCHELISVAPP
CDRISFNFSSEQEAEGWATVVMSSLREAHRATPQENGLQHLFDGLHLRNTSALQQTEDAC
IELKKAIEAGDMQSASVFAASLARRQAALKIQPSTKTYEETEINLAVIVEDSSSSCCITV
KVFPHMTTASLKQQMFLEYGFHPRVQRWVIGQCLCTDLRTLASYGVRQDGDTAFLYLLSA
RHSRLTLQVLQKDQESALLFSPPSSFQNPSLPAAFTNGPLSHDGRPFSTLPPRLHRTSNN
GGSERPNIGNIRDPIIFEMSRLNPNTPSTQGWSCPSCTYINKPTRPGCEICSTNRPENYI
IPGGHQPDPLELRRILQEKESIRQYQQAKEQEQRENFDRLVKMDGQDLVPNPEPVDCKIC
FVDLQSGEGVLLRECLHCFCKECLRSIIMLCEEPEVSCPYRDDTYACPWALQEREIRALV
PLEEYERWLQRSLSVAESRCEGSYHCATPDCPGWCVYEDTVNVFHCPICRKHNCLICKAI
HEGMNCKQYQDDLAARAINDSAARRTTHLLKTLVQSGEAMHCPQCGIIVQKRDGCDWLRC
TVCHTEICWVTRGPRWGPKGPGDTSGGCRCNVNNQKCHPKCQNCH
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctaagttcaggcggctggactcacagccccggcctcacgccggaccagtccacc
gccctcaccagcagctatgaagcctcgcaggcacagcctggctgccaaaccgtcctcatg
tcggttcgggtctcggtgtgccattccggggttcgtccgctgtgtcttccgggagctggt
gatgagtcactccgcctgcagctgagcatggacccggggaaatccggggaattccggctg
gcgatacagagcaccagcgggacgggccagagtgtgaccataaacgagtttgatttaaga
tccataaattatgaagtgaagtcgccaaagtgccacgagctgatatcggtggcgcctccg
tgcgaccgcatcagcttcaacttcagcagcgagcaagaggctgagggatgggccaccgtg
gtcatgtcctcgctgagagaagcacatcgagccacacctcaggaaaacggtctacagcac
ctctttgatggcctccatctccggaatacctcagctttacagcaaacagaggatgcttgc
atagagctgaaaaaagccatcgaggcaggggacatgcagagcgcttctgtcttcgccgcc
tctctcgcccgcagacaggcagccctgaagatccagccctccaccaaaacctatgaagaa
actgaaataaatttagctgttattgtcgaggattcctcctcgtcttgttgcatcactgtg
aaagttttccctcacatgactactgcgtcgttgaagcagcagatgtttctcgaatatggc
ttccacccgcgggtccagcgttgggtgatcggccagtgtttgtgcaccgacctccgaact
ctcgcatcgtacggcgtccgtcaggatggtgacacggccttcttgtacctcttgtcagcc
cgccactctcgcctgaccctccaggtcctgcagaaggaccaggagagcgccctccttttc
agccctccgtcgtcttttcaaaacccctcgctccctgctgccttcacaaacggccccctc
tcccatgacgggcggccattttccactctacctccaagactccacaggaccagcaataat
ggtggctcagagagaccgaacatcggcaatattagagatccgatcattttcgaaatgtct
cgactcaatcccaacacaccttctacccagggttggtcttgtccatcttgcacatacatc
aacaagccaacgcggccgggctgcgagatctgcagtacaaaccggcctgagaactacatt
atccctggaggacaccagcctgaccctctggagctcagaaggatcctgcaggagaaggag
tcaatcagacagtatcagcaggcaaaagagcaggagcaaagagagaactttgaccggctg
gtgaagatggacggtcaggacctggtgcccaatcctgagcccgtggattgtaagatctgc
ttcgtggacctgcagtcaggagaaggtgtcctgctgagagagtgtctccactgtttctgc
aaagagtgcttgcgctccatcatcatgctgtgcgaggagcctgaggtttcctgtccatac
agagacgatacgtacgcctgtccttgggccctgcaggagcgagagatccgagctttggtg
cctctagaggaatatgagcgctggctacagagaagcctttctgtagcagagtctcgctgc
gagggcagctatcactgtgcaactccagattgcccgggatggtgtgtgtacgaggacact
gtcaatgtcttccactgtcccatctgtcggaaacacaactgtctcatttgcaaggccatc
catgagggaatgaattgtaaacaataccaagacgacctcgcagcccgagccataaacgac
tctgctgccagaagaacgacacatctgctaaagacccttgtgcagtcaggggaggccatg
cactgtcctcagtgtggcatcattgtgcaaaagagagatggatgtgattggctgcgctgc
actgtctgtcacactgagatctgctgggtaaccagagggcctcgttggggacccaagggt
cctggagacaccagtggaggatgtcgctgcaatgtcaacaatcagaaatgtcatcctaaa
tgccaaaactgtcactaa
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