Xiphophorus couchianus (Monterrey platyfish): 114136962
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Entry
114136962 CDS
T05908
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114136962 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xco03041
]
114136962 (prpf4)
Spliceosome [BR:
xco03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
114136962 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
PRP4
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_RIG_2nd
Ge1_WD40
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
eIF2A
WD40_like
Beta-prop_SPT8
Beta-prop_WDR11_1st
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
114136962
NCBI-ProteinID:
XP_027861209
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All DBs
Position
21:complement(23518794..23549152)
Genome browser
AA seq
510 aa
AA seq
DB search
MLDEEDSAPAVKKSRVFYGSLEEKERQRITMETASGAAAGSDALKAGIRAGNINISSGET
MEMEERVSERQLEALAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKRSRKDEERAKRSRDECLQTWYHEGPASLKEARLWLARYSLPRAMRR
LEAARALKEVAEATKTIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWS
GLCKLWSVPDCALIRTLRGHNTNVGAVAFRPQAGVSLDRSDVSLASCAADGTVKLWNLES
DEPVADIEGHGDRVSRVSWHPSGRFLGTTCYDRSWRLWDLQLQEEILHQEGHSKGVHDIS
FHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSVHFSPNGHHLATGSGDNTCK
VWELRNRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKIWSHPGWMPLKTLAGHE
GKVMGVDVSPDGKLIATCSYDRTFKLWLSE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgttggacgaggaagactcggctccggccgtgaagaagagccgcgtgttctatggcagc
ctggaggagaaggagcggcagcgcatcaccatggagacggccagcggcgctgccgcagga
agtgatgcgctgaaggcgggcatcagagcaggaaatatcaacatctcatcaggagagacc
atggagatggaggagcgggtcagcgagcgccagctggaggcgctggccgagttcgagcgg
cgccgccgagcgcgacagatcaccgtctccaccgacgacgccgaggtgaaggccggcctg
cgagcgctgggagagccaatcacgctgttcggagaggggccggccgaccgccgagagagg
ctgcgcagcgttctgtctgtcgtcggtccggacgccctgaagagatccaggaaggacgaa
gagagagccaagaggtcacgggacgagtgtctgcagacttggtaccatgaaggccccgcc
tccctgaaggaagctcgcctctggttggctagatattctctaccacgggcgatgaggcgt
ctggaagccgcacgcgctttgaaggaggttgccgaggcgacgaagacgatccgccagcag
gagttgcacaagtcgctgaggaatctgaacaacttctgcagtcagattggagacgatcgg
ccaatcagcttctgccacttcagtccggactccaagatgctcgccacggcgtcctggagc
ggcctgtgcaagctgtggtcggtcccggactgcgccctgatccggaccctgagaggacac
aacaccaacgtgggtgccgtggcgttccgcccgcaggccggcgtctctctggaccggtcc
gacgtcagcctggcgtcctgcgccgccgacgggacggtgaagctgtggaacctggagagt
gacgagccagtggcggacatcgagggtcacggtgatcgggtttccagagtttcctggcat
ccgtccggaagattcctgggaaccacctgctacgaccgctcctggcgtctctgggatctg
cagctgcaggaggaaattctgcaccaggaaggtcacagcaaaggagttcatgacatcagc
ttccatcctgacggctccttggctgctacaggagggctcgatgccttcggcagggtgtgg
gacctgaggacggggcgctgcgtggttttcctggagggacacctgaaggagatctacagc
gttcacttcagtcctaacggccatcacctggccacaggaagtggagacaacacctgtaag
gtgtgggagctgcgcaacaggaagtgcctgtacacagtccccgcccaccagaacctgctg
tctgccgtccgattccaacccactgacggtcacttcctgttgaccggagcttacgacaac
acggcgaagatttggagccacccaggctggatgcccctgaagacgctagcaggacatgag
gggaaggtgatgggcgtggacgtgtcacctgatggcaagctgatcgccacctgctcctac
gaccgaaccttcaaactctggctgtcagagtga
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