Xiphophorus couchianus (Monterrey platyfish): 114137048
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Entry
114137048 CDS
T05908
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04140
Autophagy - animal
xco04148
Efferocytosis
xco05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
114137048 (vps41)
04148 Efferocytosis
114137048 (vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
114137048 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114137048 (vps41)
Membrane trafficking [BR:
xco04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
114137048 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
zf_RING_Vps8_fungal
zf_RING_Vps8
Vps39_1
Beta-prop_EML_2
Beta-prop_HPS5
Beta-prop_RIG_2nd
WD40_WDHD1_1st
TPR_19
TPR_PEP5_VPS11
TPR_7
WD40_Prp19
TPR_17
VPS8_N
zf-RING_5
RH_dom
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
114137048
NCBI-ProteinID:
XP_027861358
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All DBs
Position
21:7906525..7926374
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AA seq
854 aa
AA seq
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MAEVEEQERKQSGEFTDESEEEDSEEEPKLKYERLSNGVSEILQSDAASCMTVHDKFLAL
GTHFGKVFLLDIQGNATQKYDVSSVKINQISLDESGENVGICSEDGKVQVFGLYTREGFH
ESFDCPVKVVALHPQFSRSNYKQFVTGGNKLLLYERNWLNRWKTVVLHEGEGTITNVKWR
VNLIAWANNLGVKIYDFSTKQRITNVLRDNASLRPDMYPCSLCWKDDTTLIVGWGTSIKI
CTVKERNPTEMRDLPNRYVEIVSAFETEFFICGLAPLADQLVTLFFVQDPMNQMDEEDRA
RPRLDIIQPLPESCEEISSDALSVRFYQDNECRDYRLEHSEGESLFYIISPKDIVVAKER
DQDDHIDWLLEKKKYEEALMAAEISFKNIKRHDVQKIGMAYINHLVENRDYDAAARKCQK
VLGKNMELWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHDFLKSDYEGFATLI
REWPGELYNNMAIVQAVNDHLKKDPTNSTLLTTLAELYTYDQRYDRALEIYLRLRHKDVY
QLIHKHNLFSSIEDKIVLLMEFDKEKAVDMLLDNEDKISIDKVVVELDGRPELLHVYLHK
LFKRDHHKGQKYHERQIGLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVFLL
SRMGNCKRALQMIMEELEDVDKAIEFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGTH
VDPILLIKRIKEGMEIPNLRDSLVKILHDYNLQILLREGCKKILVADSLSLLKKMHRTQM
RGVRVDEGNICESCHSTILPSDMAQPFSVVVFHCRHMFHKECLPSSGTIPGLQFCNICSA
KRRGPGSGILEMKK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagtggaggagcaggaaaggaagcagagtggggaattcacagatgaatctgag
gaggaggacagtgaggaggagcccaagctgaagtacgagaggctctccaatggggtgtct
gaaatcctccagtccgacgcagccagctgtatgaccgtccacgacaagtttcttgcccta
ggaacccatttcggaaaggttttcctgctggacattcaaggaaatgccactcagaaatat
gacgttagttcagtgaagatcaaccagatcagcctggatgaaagcggtgaaaatgtgggc
atctgctctgaggacgggaaggttcaggtgtttggcctctacacaagagagggcttccat
gagagcttcgactgtcctgtcaaagttgttgctttacatcctcagttcagcagatcaaac
tacaagcagtttgtcaccgggggcaacaagttgctcctgtatgaaagaaactggctgaat
cgctggaagactgtggtcctgcatgaaggagagggaacgatcactaacgtgaagtggaga
gtcaacctgatagcctgggccaacaacttgggagtgaaaatctatgactttagcaccaag
cagcggatcaccaatgtgctgcgagataacgcgagtctgcggcccgacatgtatccctgc
agcctgtgctggaaagacgacactactctcatcgtcggctggggaacttccatcaagatt
tgtacagtgaaagagcgaaatcctactgaaatgagggatctgcccaatcgctatgtggaa
atagtgtctgcatttgagacggagttcttcatctgtggtttggcgccgctggcggatcag
ctcgtcaccctgttttttgtgcaggaccccatgaaccagatggatgaagaggatcgtgca
cggcctcgtctcgacatcatccagcctctccccgaaagctgcgaggagatctcctcagat
gctctgagtgttcgcttttaccaggacaacgagtgcagggattaccgcctcgagcattca
gagggagagtcactcttctacatcatcagtcccaaagacatcgttgtggctaaagagcga
gaccaggacgaccacatcgattggctgctggagaagaagaaatatgaggaggcgctgatg
gctgcggagatcagcttcaaaaacatcaagaggcacgatgttcagaaaatagggatggct
tacatcaatcacttagtggagaacagagactatgacgctgctgccagaaaatgtcagaag
gttcttgggaaaaacatggagttgtgggagaatgaggtgtacaggtttaagaccattgga
cagctgaaggctatcagtcaatatctaccgagaggagatctgcgtctaagaccggccatt
tatgaaatgatcttgcacgactttctaaaaagtgattatgagggttttgctacactgatc
cgggaatggcccggagaactgtacaacaacatggccattgttcaggccgttaacgatcac
ctaaagaaagatcccaccaacagcacgctgctcaccacgctggccgaactgtacacttac
gaccagcgctacgacagagccttggaaatctacctgaggctgaggcataaggacgtctat
cagctgatccacaaacacaacctgttctcctccatcgaggacaagattgtcctcctgatg
gagtttgacaaagagaaagctgttgatatgcttctcgacaatgaagacaagatatctata
gacaaggtggtggtggagctagatggaaggcctgagctgctgcatgtgtacctccataaa
ctgttcaagcgggatcaccacaaaggccagaagtaccacgagagacagatcggtctgtat
gcagagtacgaccgaccaaacctcctgccttttctgagagatagcacccactgccctctt
gaaaaggctcttgagatttgtcagcagaggaactttgtagaggagactgtcttcctgctc
agcaggatggggaactgtaaacgagcccttcagatgatcatggaggagctggaggatgtg
gacaaagctatagagtttgctaaggagcaggatgacgcagagctgtgggaggatctcata
tcttactctatcgacaagccacctttcatcactggcctcctcaataacatcggcactcat
gtggatcccattctgctcatcaaacgcataaaggaggggatggagatcccaaacctgaga
gactcactggtgaaaattctccacgactacaacctccagattcttcttcgggaaggatgc
aaaaagattcttgtggccgattcgctctccttgctgaagaagatgcatcggacacagatg
cgaggagtccgggtcgatgaagggaacatctgtgagtcatgtcacagcaccatactaccc
tcagatatggcccagccgttcagtgtggtggtgtttcactgcagacacatgtttcacaag
gagtgtttaccatcttcaggaactattcctgggttgcagttttgtaacatctgcagtgca
aagaggcgaggacctggaagtgggatacttgagatgaaaaagtaa
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