Xiphophorus couchianus (Monterrey platyfish): 114137065
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Entry
114137065 CDS
T05908
Symbol
col11a1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114137065 (col11a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114137065 (col11a1)
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114137065 (col11a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
114137065
NCBI-ProteinID:
XP_027861373
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All DBs
Position
21:18030177..18129074
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AA seq
1810 aa
AA seq
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MEMQRWSTRWKTKRWLMDSTRTAFVTLTLLLQAACVRAAEPVDVLKALGFQNYPEGVTKV
TGFCANRRASKSDSAYRIARQIQISAPTSQLFPGGVFPEDFSILTTVRPESGLQSFLLSI
YNEQGVQQLGVEVGRSPAFLYEDQTGKPAPEDYPLFTSLNLSNGKWRRVAISVEKKTVTI
IVDCMRKITKPLLRSDQGSISTNGITVFGTRILDEDVFQGDIQQLLIVADPKAAYDYCDH
YSPDCDTPHKDSLQAQEPDEEYITDDIDYRQFYEYSEGPTDSVPTDEYSEKQLNNVEGDY
YTDIDYGTLDGTQTQSPVATSGPSEAVKEDFIGAHATEAPTLAPEPGTVLETGDNSETGA
EAYDFKEYDLNEYDLGKLDNKYDYGTYDEYGPLPSKAPTAYGEEVGPGVAAETDFSESTI
AGSQAAFGQKGEKGEPAVIEPGMLIEGPPGPPGPSGLPGPSGLQGPPGTAGDPGDRGPPG
RAGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPMG
LTGRSGPVGPPGSGGLKGESGDHGPQGPRGIQGPPGQPGKVGKRGRAGADGARGMPGEPG
SKGDQGFDGLPGLPGEKGHRGEPGSMGPAGAPGEDGQRGEDGEIGPRGLAGESGPRGLLG
PRGPPGPPGVPGVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEKG
PQGRSGLPGLPGADGPPGHPGKEGPPGEKGSQGPLGPQGPLGYPGPRGVKGADGVRGLKG
SKGEKGEDGFPGFKGDMGIKGDRGEIGMPGSRGEDGPEGPKGRAGPNGESGPLGPAGEKG
KLGVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGIAGKSGPRGQRGPTGPRGARGARG
PTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPSGKDGLPGHPGQRGETG
FQGKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQG
SPGKDGPPGLRGFPGERGLPGATGPSGLKGGEGPQGPPGPVGSPGERGNAGPAGPIGLSG
RPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEAGEPG
QKGSKGDKGEQGPPGPAGVQGPVGAPGPAGADGEPGPRGQQGMFGQKGDEGPRGFPGPPG
PIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGSSGADGPQGPPGGVGPIGSVGEKG
EQGEAGNPGPPGEPGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPG
DPGPPGEPGVAGTDGESGEKGEDGEPGQPGPPGPSGEAGPPGPPGKRGPPGALGAEGRQG
EKGAKGEAGAEGPAGKTGPVGPQGPPGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPMG
PPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGTPGGKGDSGISGASG
PLGPPGPPGLPGPQGPKGAKGSSGPAGPKGDTGIIGPPGPPGPPGEVIQPLPIQSPKKTK
RSSDMQSDAAGGFVDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPE
FPDGEYWIDPNQGCSGDSFKIYCNFTAGGETCIYPDKKSNGVRISSWPKEVPGSWFSEFK
RGKIFSYVDADGNPINMVQMTFLRLLTASARQNFTYSCHQSVAWHDAASDSHDKALRFLG
ANDEEMSFDNNPFLQAISDGCSTRNGYGKTVMELNTPKIDQVPIVDVMLTDFGDPNQKFG
FEVGPVCFLG
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaacgttggcttatggattccact
agaactgcattcgtcactttaacactgcttctgcaggctgcttgtgtcagagcagcagag
ccagtggacgtcttaaaagcgttaggatttcaaaattaccccgaaggagtgacaaaagta
acgggattttgtgcaaaccgaagagcatcgaagtcagactcagcctacagaatcgccagg
cagatccagatcagcgcccccacctcacagttattccctggcggcgtttttcctgaggat
ttctccatcctgaccaccgtgcgccccgagtctggcctccagtccttcttgctgtccatt
tacaatgagcaaggagttcagcagctgggtgtagaggtgggacgctcacctgctttcctg
tatgaggatcaaaccggcaagccagccccggaggactaccccctgttcacctctctcaac
ctttctaatggaaagtggcgccgtgtggccatcagtgttgagaagaagacggtcaccatc
attgtggattgtatgaggaagatcaccaagcctctgctcaggagtgaccaaggctccatc
agcaccaacggcattacggtgtttggcaccaggatcctggatgaggatgttttccagggg
gacatccagcagctcctgattgttgctgatcctaaagcagcatatgactactgtgaccat
tacagcccagactgtgacacgccgcacaaggattcgcttcaggcccaggagccagacgaa
gagtacattactgacgatatagattacagacagttctatgaatactctgaaggaccaaca
gactccgtcccgactgacgaatactctgaaaaacagctaaacaatgtagagggagattac
tatacagacattgactacggaactctagatggtactcagactcagtcacctgttgccacg
agcggaccaagcgaggctgtaaaggaggattttatcggggcgcacgccaccgaagcccct
actctcgctccggagcccggcactgtgttggaaacgggggacaactcggagaccggtgcg
gaagcatatgactttaaggagtatgacctgaacgagtatgacttgggcaagttagacaac
aagtatgattatgggacatacgatgagtacggccccctcccatctaaagccccgacagcc
tatggtgaggaagtggggcccggggttgctgccgaaaccgacttttctgaaagtacaatt
gctggttctcaagctgccttcggacagaagggcgagaagggcgagccggccgtgatcgaa
cctggcatgctgattgaaggaccaccaggaccacccggcccatctggtcttccgggacca
tcaggccttcagggacccccgggcactgctggagatcctggtgacagaggtcctcctggc
cgcgccggtctccccggcgccgacggcttaccgggacctccaggtaccatgctgatgctc
ccatttcgcttcggtggggacggcgagaagggtccggtggtgtcggcccaagaagcccaa
gcacaggccatcctctcccaggccaggctggcgatgaggggacctcctgggccaatgggt
ttgactggaagatctggaccggtgggtccacctggctcaggtgggctgaagggtgaaagc
ggagaccacggtcctcagggcccacgtggcattcaaggaccccctggacaacctggcaaa
gttggcaaaaggggtcgggccggtgctgacggcgctcgtggaatgcccggagagccaggc
tctaagggcgaccaaggctttgatggacttcccgggctgcctggagaaaagggccacagg
ggcgagccggggtcgatgggaccagcaggagccccaggagaggacggacagagaggtgaa
gacggagagattgggcccagagggttagctggagagagcgggcccagaggtttgctggga
cctcgcggtcctccgggaccccccggagtgccgggcgttgccggagtggacgggccaccg
ggtcccaaaggcaacatgggacctcaaggggaaccgggcccaccgggtcagcagggaatc
cctggaacacagggcctccccggtcctcaaggtccgatcggaccacctggagaaaaaggc
cctcagggcaggtcgggacttcctggactgcctggagctgacgggcctcctggtcatcct
ggcaaggagggtccacccggagagaaaggttctcagggtccactgggtcctcagggtcct
cttggttatcctggcccccggggtgtaaagggggccgacggagttcgtgggctaaaggga
tcaaaaggagagaagggcgaggacggtttcccaggttttaaaggagatatgggaatcaaa
ggtgaccggggtgaaattggcatgcctgggtcccgtggagaggatggtcctgagggacct
aaaggcagagctggccccaacggagagtcggggcctctcggtccagcaggagagaaaggc
aaacttggtgtcccaggattgccaggttatcccggacgacagggaccaaagggctcgagt
ggattccccggcttccctggagcaaacggcgagaaaggagcacggggcattgctgggaaa
tctggtcctagaggacagagaggtccaacggggcctcgtggggctcgaggagccagaggt
ccaacgggcaaacccggtcccaagggcacagcaggaaacgacggcccccctggcccgcct
ggtgagagaggacctcaaggacctcaggggccagtgggcttccctggaccaaagggcccc
cctggaccatctggaaaggacggccttcccggacaccccggacagcgtggagagacgggt
ttccaaggaaaaactgggcccccaggaccaggaggtgttgttgggcctcagggacccact
ggagagaccggtcctgttggtgagcgcggacatcctggacccccaggcccacctggagag
cagggtcttccgggtgctgctggcaaggagggagccaagggtgatcctggaccacaaggc
tcccctggtaaagatggtccgccgggccttcgcggcttccccggagagagaggtctaccc
ggtgccacgggcccatctggtctgaagggtggagagggaccccaaggtccacccggtcct
gttggttctcctggtgaaagaggtaatgctggtccagccggcccaattggtttatctggt
agacctggtcctcagggtcctccaggtcctgctggagagaaaggtgctcctggtgagaaa
gggccgcagggcccagccggacgtgacggggtccagggtcccgtcggtcttcctggcccc
gctggacctcaaggcccacctggagaggacggtgacaagggagaggctggggagccgggc
cagaaaggaagcaaaggtgacaagggagagcagggcccccccggaccggctggtgttcaa
ggtcctgtgggagccccaggtcctgctggagctgatggagagccaggtcccaggggtcag
caaggcatgttcgggcagaagggagacgagggtccgagaggcttccctggacccccgggt
cccattggtctacaggggcttcccggacctccaggtgaaaaaggagaaaacggcgacgtc
gggcccatgggtcctcctggtccccctggtcccagaggccctcagggttccagtggagcc
gacggtcctcaaggtcctccaggtggtgtgggccccataggatctgtgggtgagaagggc
gaacaaggggaggctggaaacccgggaccacctggagagcctggaactgggggacccaaa
ggtgagagaggagagaaaggagaggccggaccccccggagctgctggacccgccggtgcc
aaagggccccctggagatgatggtccaaagggcaaccctggacctgtcgggttccctgga
gaccctggaccccctggagagccaggcgtcgctggtactgatggagaatcaggagagaaa
ggagaggatggtgagcctggtcaacctggacccccgggtccttctggagaggccggtcca
cctggtccacccggcaagagaggacctcctggagctttaggagccgagggccggcaagga
gagaagggcgccaagggtgaagcgggcgctgagggcccagctggtaaaacaggacctgtt
ggaccccaaggacctcctgggaagcccggtccagagggtctgcgtggaatccctggccct
gtgggtgaacaaggactgcccggtgctccaggacaggacggtccaccaggtccaatgggt
ccgccaggtctgccgggcttgaaaggcgaccccggctccaaaggtgaaaagggtcaccca
ggtttgattggcttgattggaccccctggagagcaaggagagaagggagatcgaggtctt
cccggaccccagggcacccctggtggcaaaggtgactctggcatcagtggagcctctggt
cccctcggtcctcctggtccccctggtctacctggtcctcaaggtccgaaaggagccaag
ggttcaagtggtcctgctggtccaaaaggagacactggtataataggtcctccaggtcca
cctggcccaccaggtgaggtcatccagccccttcccattcagtcgcccaagaagaccaag
cgctccagtgacatgcagtcagacgccgccggcggcttcgtggattacggcgaaggcatg
gaggacatctttggctcgctcaacaacctcaaacaggacatcgaacgcatgaaatacccc
atgggcacgcagaacaacccggccagaacatgcaaagacctccagctgtgccaccctgag
ttccccgatggcgagtactggattgatcccaaccaaggctgctctggggattcattcaaa
atctactgtaacttcactgctgggggtgaaacctgcatctatccggataaaaagtccaat
ggggtcagaatatcctcgtggcctaaggaggttccaggttcatggttcagtgaattcaag
cgcggtaaaatattttcctacgtggatgctgacggaaaccccatcaacatggtacagatg
accttcctcagactactgaccgcctcagccaggcaaaacttcacctacagctgccaccaa
tctgtggcgtggcacgacgcggccagcgacagccacgacaaggcgctgcgcttcctgggc
gccaacgacgaggagatgtctttcgacaataacccgttccttcaggccatctcggatgga
tgttcgacaagaaacggctacggaaagactgtgatggagctcaacactcccaaaatcgac
caggttccaatcgtcgatgtcatgttgactgatttcggggacccgaaccagaagttcggg
tttgaagttggacctgtctgcttccttggataa
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