Xiphophorus couchianus (Monterrey platyfish): 114137708
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Entry
114137708 CDS
T05908
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
114137708
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Gene cluster
GFIT
Motif
Pfam:
Collagen
LapA_dom
Motif
Other DBs
NCBI-GeneID:
114137708
NCBI-ProteinID:
XP_027862295
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Position
22:complement(9243553..9270110)
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AA seq
1742 aa
AA seq
DB search
MDELTRQMEISGEKVLTETVTSTTRLTSLPPKGTSGSNHRNMSSSAGGLGFEKNVLTQNS
SGTYFSSSSIGVTSNYSSSSGIYLGGDSSGGGEGGGSYIDGEGYGSGGGGRGGSSGSTYL
VSSVSKVRSSSSGGARRAQTGGSSVGLSPGFRERKAIASRSGGYDGSSSGNSSPEFPRKD
YGNYCSGATRGRSESRESEIRARLQSASPSAGRWAELEDVKKLLKGRSSSVSPTRSSASV
TLPVPKKASVETKTVSVGTQSAASTLFEPVVQTNGFHTIDVSGLYDSRLTSRQRDSGVQA
GQHTVTVKSCHCDAGVKSSQYDVSLGSGQYDTGLKSGRYDMSLKSGQYDTTGRSGQYDTL
DSAFPTFSWSTSTLPSSTTVVAGNPTSYTYQLGQVSANNMSGGSPPLSPIPQQSLSVYGF
QNNLAPASVGVLTTSGGNVTANLGGYGVQKNAANGSAVISSGISTATRSQIDDVYKRDYR
YMASDKENVPARREGEMLILAKDSGKQFTTTSSTHMGGGSLSGDSIKKEKLISSYVDTGT
LKAETGNSYYGTSGVLMKDKATYAEIHRDSGVFGGGGLCCCSDSCCSWWKWLLGLLLLCL
LLLGLLFGLIALAEDVRKLKKQVSTLENEVSVANARTSRLSAGSSNDVNTYVSGGGGGGG
TGTDNTLILGFGGAGGGGSDSKTQIRIAGAGAGAGGSASRNDVDVGVVGVGGAGGAVGAG
TSSSSSSGTSFSGSAGSAGTSLSGGAGSAGTDSVSAGGASFGGGTGSSGSSGTSFVIGTG
GGTSGDVGTGVRGRYIDSAYLQMAIHQMLKSEMQSQAFRGFLASSVQGERGLPGPKGDSG
LKGEPGFPGNPGAPGPMGHAGPEGPKGQKGSQGEHGVEGPPGVRGREGLPGPRGDLGPAG
FGLKGDKGEAGSVGSAGAPGQKGAQGIQGPPGPQGFRGEAGLPGPKGDRGLAGFQGLKGE
TGEKGIRGLQGEPGLPGPAGEKGSKGSMGLSGQDGEKGSRGDQGPHGPPGLRGSAGPPGD
AGLPGTPGLQGPPGIPGNPGQPGAKGEPGQAGRIINAAGSTSVGIPGPPGPAGPPGPAGS
PGLSGPIGPAGLPGPPGPKGDRGYKGEQGETGITRGTISSSTAERQFGAGGSSSFGGIPG
PPGPPGPPGRPGDSRQGPPGPPGPPGQPGYGIPGPKGEKGDVGFASSSGTYYTGPPGPPG
QPGQPGPKGATGSPGPRGYTGDTGAPGIPGASRGSVSVTSGPAGPPGPPGPPGLPGSFSS
STEMRQYISDYLSRYRLSSLPGPPGPPGPPGLPGTFSGSIDDISTRIIAYLRRSDSGFSI
GVQGPPGPPGPPGPASGSLTVNALITMLQRDDVRRYLSGPPGPQGPPGPPGASGGLSGTY
RVEEIATYVFNIMNERGIARGPPGPRGLPGPPGAPGAGGSGFTTATIDYSALIRNSDFRS
WITSAVQQGPPGAPGLPGPPGPQGPPGVSTATVYGSGGRGYSLEEIQRYLQGSGFRGLPG
PPGPPGPQGPPGAVTGSVSYSGNLPRESIRAEIQQYLSSDSVRRTIVGPPGPQGPKGQKG
ERGEPGYSQSYIQSHSYQQSDGSYGSQRRDVDVSRLSETLDYSNVAMKVTDYIKNQGLLQ
QYISDGSWRTNVRAIQGPPGPPGPPGPPGYSRVIGSYGNVTADLMDFFRRYGTVPGAPGS
PGPKGERGHPGPKGDKGDPGPPGLPGIPAPLTVQIPHKVQKREAGDKGAVRQKRRRRQAG
FS
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaaggcagatggagatctcgggagaaaaggttctgacagagaccgta
acctccaccactcgactgacttctctcccaccaaagggaaccagcggatcaaatcacagg
aatatgtccagcagtgccggagggctgggttttgagaagaatgtcttaacgcagaacagc
agtgggacctacttctcttcatcctctataggcgtgacgagtaactacagctcctcctca
ggaatctacctgggaggagattcctctggaggaggtgaaggtggcggaagctacatcgat
ggagagggctacgggagtggaggaggaggaagaggaggaagcagtggaagcacttatctc
gtgagctccgtgtcaaaggttcggtccagctcgtcgggtggtgccaggagagctcagact
ggggggtcatcagtggggctgtcgccaggtttcagagagaggaaggccatagccagccgc
tcgggaggctacgacgggagttccagtggtaattcctccccagaatttccacgcaaagac
tatgggaactactgctccggtgccacaagagggaggagtgaaagcagagagagcgagatc
agagccagattgcaaagtgcctccccatctgccggaagatgggcagagctggaagacgtg
aagaagctgctgaagggacgctccagcagcgtcagtccaacccgctcctccgcctcagtc
accctgccagtacctaaaaaagccagtgtggagaccaagaccgtctcagtgggcactcag
tcagcagcttcaactctatttgaacctgttgttcagaccaatgggttccacactatcgac
gtgtcgggcctctatgacagcagactgacatccaggcagcgcgactctggtgtccaagca
ggccaacacactgtcacagtaaagtcatgccactgtgacgctggagtcaaatccagccag
tatgacgttagcctgggctcaggtcagtacgatacgggtctgaaatctggacgatatgac
atgagtctgaaatcaggccagtatgacaccactgggagatcaggccaatacgacaccctg
gattcggcctttcccactttctcctggtccacctccacgctgccctcctccacgaccgtc
gtcgctggcaaccccaccagctacacctaccagcttggtcaggtcagcgccaacaacatg
tcaggaggctccccgccgctcagtcccatcccacagcaatctctatcagtttatggtttt
cagaataacctggctcccgcctctgtcggtgtgctcaccaccagcggcggcaacgtaacc
gctaacctgggagggtatggcgtccagaagaacgctgcaaacggcagtgctgtcataagc
tcagggatctctacagccactaggtcccaaatcgatgatgtctataagagagactacaga
tatatggcctctgacaaggagaacgttcctgccaggagggagggagaaatgctcattctg
gcaaaagacagtggcaagcagtttaccaccaccagcagcactcatatgggaggaggttca
ctttcaggagactcaataaagaaggagaagcttatttccagctacgttgacacgggcact
ctgaaagcagagacaggcaattcatactacggaacatccggagtcctgatgaaagataag
gcaacctatgcagagattcacagagacagcggcgtctttgggggaggaggactgtgctgc
tgctccgactcctgctgctcctggtggaagtggctgctgggcttgctgctcctctgcctg
ctcctgctcgggctcctgtttggcctcattgcactggccgaggatgtgaggaagctcaag
aagcaagtatcgactctggagaatgaggtctcagtcgccaatgctcgcactagtcggctc
tccgccggttcttccaatgacgtcaacacctatgtgagcggcggaggcggagggggaggc
acaggcaccgacaacacactcatcctcgggttcggaggtgcaggtggaggtggctcggac
tccaaaacgcaaatcagaattgctggtgctggtgctggtgcaggcggatctgccagtcgg
aatgatgttgatgtcggcgttgtgggtgtcggtggtgctggaggggctgtgggagctgga
actagctccagtagcagctctggtaccagtttcagtgggagcgccggcagtgctggtacc
agcttgagcggcggtgctgggagtgctggtactgacagtgtcagtgcaggcggtgccagt
tttggcggcggcaccggcagctccggcagctccggaaccagtttcgtcattggcactggc
ggtgggaccagcggtgatgtcgggactggagtgcgtggaagatacatagatagcgcctac
cttcagatggccatccatcaaatgttgaagtcagaaatgcagtcacaggcatttagaggc
ttcctggcatcctcagtgcaaggagagaggggattacctgggcctaaaggggactctgga
ctgaaaggggaacctggtttccctggaaatccaggcgcaccaggtccaatgggacatgct
ggtcctgaaggtcccaaaggacagaaaggaagccaaggtgagcatggagtggaagggcca
ccaggtgtcaggggccgcgaaggactacctgggcctagaggcgacctaggacctgcaggc
tttggactcaaaggggataaaggtgaagctggatctgttggatctgctggggcccctgga
caaaaaggtgcacaaggaatccaagggccacctggtcctcagggtttccgtggtgaggca
ggactacctggaccaaaaggtgatagagggcttgctggattccaaggactcaaaggtgaa
acaggtgaaaagggaatcagaggtctgcaaggggaacctggtttaccaggaccagcagga
gagaaaggctccaaaggatctatgggactttctggacaagacggtgaaaagggatcaaga
ggggaccagggaccgcatggccctcctggactcaggggttctgctgggcctcctggagat
gctggacttccaggaacaccagggcttcaaggaccaccaggaattccaggaaatcccggc
caaccaggagccaaaggtgaacccggtcaagctggacgaatcatcaatgcagccggctct
acttctgttggcatcccaggaccacctggacctgctgggcccccgggtcccgctggttct
ccaggactatcaggtcccattggccctgctggtctgcctggcccacctggtcctaaaggt
gatagaggatataagggagagcagggagagactggaataaccaggggaaccataagttca
tctacagcagagaggcagttcggcgctggaggaagctcctctttcggtggcatacctggg
ccaccgggtccacctgggcctcccggacgtccaggcgactcgagacaaggacctccagga
ccaccagggcctccagggcagccaggttatgggataccaggacctaaaggagaaaaggga
gatgtgggttttgcgtccagctcaggaacatattatactggaccaccaggacctcctggg
cagcctgggcagcctggacctaaaggagcaacaggctctcctggaccccgcggatacaca
ggagacactggagctccaggaattccaggcgcatcaagaggttcagtctcagtcacctct
ggccctgctgggcccccagggcccccagggcctcccggcctgcctggttccttttcttcc
tccactgagatgcgacagtacatttcagactatctgagtagatacagactgagcagtcta
cctggccctccaggtccacctgggcctccaggactcccagggaccttctcagggtctata
gacgacatctctactcgcatcattgcatacctgcgacgttcagactcaggcttcagtatc
ggcgttcagggacctccaggaccgcctgggcctcctgggcccgcctctggctccctgact
gtcaacgctctcatcaccatgcttcagagagatgacgtgagaagatatttgtctggacca
ccggggcctcaaggacctcccggacccccaggggcctcaggaggactctccggcacttac
agagtagaggagatagccacatatgtcttcaatatcatgaacgagagggggattgcgaga
ggcccgccaggtccacgaggtctgccgggcccccccggagctccaggcgcaggaggctct
ggcttcaccaccgccaccatcgactactcggctctgatccgaaattcagatttccgctcc
tggatcacttccgctgtgcagcaaggtcctcctggtgccccagggctgcctgggcctcct
ggtcctcaggggcccccaggggtctccacggcgacggtgtacggatcgggaggtcgtggc
tacagcttggaggaaattcagcgctacctgcagggttctggattcagaggtctccctgga
cccccgggccctccaggtccccagggcccaccgggcgctgtcaccggatcagtgtcctac
agtggaaatctccctcgggagagcatccgcgctgaaattcaacagtatctgtctagcgac
agcgttcgacgtaccattgtcgggcctccaggtcctcaaggtccaaagggtcagaaggga
gaacgcggagagcctggctactcccagagctacatacagagccacagctaccaacagagc
gacggtagctatggctcccagcggagagacgttgatgtcagcaggctctctgagacgctc
gactactccaacgtcgccatgaaagttacagactacattaagaatcaaggcctgctgcag
cagtacatctccgacggttcatggaggacaaacgtccgagcaattcaaggacccccaggt
cctccgggccctccaggaccgcccggctacagccgtgtgattggctcctatggcaacgtc
acggctgacctgatggacttcttcaggaggtacggcaccgttcccggcgcgccaggaagc
ccaggtccaaagggagagagagggcaccccggacccaaaggagacaagggtgatccagga
cctccaggtttacctggaatcccagcgcccctcaccgtccagattccacacaaagtgcaa
aagagagaagcaggcgataaaggggcagttcgtcaaaagcgtcgtcgacgtcaagccggc
ttcagctga
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