Xiphophorus couchianus (Monterrey platyfish): 114137762
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Entry
114137762 CDS
T05908
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
114137762 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xco03400
]
114137762 (msh6)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
114137762 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
PspAA
Motif
Other DBs
NCBI-GeneID:
114137762
NCBI-ProteinID:
XP_027862366
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Position
22:complement(15667606..15676050)
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AA seq
1379 aa
AA seq
DB search
MAKQSSLFNFFTKSPPPVSKPKQSSSPAEADLPSSVERSNSSPKEEARQTQSNQQQQQQP
SKNTKVKQSKTASGGFQKLFGDKAATTENSSKCSFGAGALVWAKLEGHPWWPCMVVPQPL
TGQQMRGKGRDQRIHVHFFDEPPTRGWVSTKYIREYQGSDSSDVKPGGVFFSSKPVIRHA
MELADKSYFDSPEKRLKMPVCRDPSDEEEEDEEEEEMELDKSAVSDEEVSDMDEKKSKEV
KLPKVSRRSSRSSAEQGGKPKRRRIIVASDSDGSDEEFKPEQAASTSEEEEEEATMSSEE
EEKESSQESEADSPIKPVKRKRPADKSVSKKANTPATPSAGPKRAPKTITADAKTRLSAF
SAPDSFESQANGSGPAGGATTWDHEKLEWLQDGRRKDGKRRRQSEDDYDPTTLYVPEDFL
NRNTPGMRRWWQLKSGMFDTVIFYKVGKFYELYHMDAVIGVNELGLTFMKGTWAHSGFPE
IGFARFSDVLVQKGYKVARVEQTETPEMMEARCKTMAKPTKFDRVVRREVCRIITRGTQT
YSVLDGAPSESQSKFLLSLKEKAEDESSGRHRTYGVCFADTSVGYFHIGQFSDDRHCSRL
RTLIAHFPPAEVLFEKSNPSAETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEENY
FEEAAGDGFLPAFLRRMTLESDSLCLSPKEGYELALSALGGCIFYLKKCLVDKELLSMAN
FEEYVPVDVELEKAAGPASFFSQTRQRMVLDGVTLANLEIFQNGSGGTEGTLLERLDSCS
TPFGKRLLKQWLCAPLCNPASIRDRLDAMDDLIAAQAQAADVSELLKKLPDLERLLSKIH
SIGTPLKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIISAFTPTSGDIRSTL
LRQIVSLKTEEDGLFPDLSAELKRWETAFDHQKARTTGVITPKTGFDPEFDQALAEIKTC
ERDLQDYLERQKKRLGCKNMAYWGTGRNRFQMEVPDSVSERNIPEEYEVKSTKKGYKRYV
TKESERLFSELQGFEEKRDAALKDCMRRLFYNFDKNYRDWRTAVECMAVLDVLLALSRYS
LGGDGPMARPQVVLPEDNDRGTPFINLTGSRHPCVTKTFFGDDFIPNDIFIGCPGNSEGD
EVEGRASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLCFTPVDRVFTRLGASD
RIMAGESTFYVELSETASILHHATRHSLVLLDELGRGTATYDGTAIASAVVKELADKICC
RTLFSTHYHSLVEDYANNATVRLGHMACMVENECEDPSQETITFLYKFITGACPKSYGFN
AARLANLPEEVIQSGHRKAREFERSTISLRLFRKLCQFAEDAAPDNARFTSLVQLLNTL
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctctctgttcaactttttcaccaagtctccgccgccggtttccaaa
ccgaagcagagttcctccccggccgaggcggacctgccgagctccgtggaaaggtccaac
tcgtctcccaaggaggaagccagacagacgcaaagcaaccagcagcagcagcagcagccg
agtaagaacacgaaagttaaacagagcaagactgcaagcggaggattccagaaactgttc
ggagacaaggccgcgacgactgaaaacagttccaaatgctcatttggtgctggagcccta
gtgtgggccaaactggaaggacacccctggtggccatgcatggtggtacctcaacctctg
acaggccagcaaatgaggggcaaaggtcgggatcagcgcatacatgtccatttctttgat
gaacctccaactagaggatgggtcagcaccaaatacattagagagtaccaagggtctgac
agcagtgacgttaaaccggggggtgtgttcttcagcagcaaacctgtgatccgccatgcg
atggagctcgccgataaatcctattttgatagtcctgaaaaacgcttaaaaatgccggtg
tgcagggatccatctgatgaggaagaggaggatgaagaagaagaagaaatggagcttgac
aagtcagcagtgagtgatgaagaggtcagtgacatggacgaaaagaaaagcaaagaagtg
aagttgcccaaagtcagtcgacgttcttcgcgttcctccgcagagcaaggaggcaaaccc
aagcgccgccgcatcatcgtggcctcagacagcgacggatcagacgaggagttcaaacca
gagcaagctgcatccaccagcgaggaagaggaggaagaggcgaccatgagcagtgaagag
gaggagaaggagagcagccaagagtcggaagcagacagcccaatcaaacctgtgaagcgc
aaacgtcccgcagacaaatccgttagtaagaaagcaaatacgccggctacgccctcagct
ggacctaaacgagctccaaagacgatcacagctgacgccaaaacccgcttgtctgccttc
tccgccccagacagcttcgagagccaagcaaacggatctggtcccgccggaggagcgaca
acctgggatcatgagaagctggaatggctgcaggacggtcggaggaaggacgggaagaga
cgccgtcagagtgaggacgactacgacccgaccaccctgtacgtccccgaagacttcctg
aacagaaacactcctgggatgcgccgctggtggcagctgaagtctgggatgtttgacacg
gtgattttctacaaggtgggaaagttttacgagctgtatcacatggacgccgtgattggt
gtcaacgagctcggcctgacattcatgaaaggcacttgggcgcactccggcttcccagaa
atcggctttgcacgtttctcagacgtgttggtgcagaagggctacaaggtggcccgcgtg
gagcaaacagagaccccagaaatgatggaagcgcgctgcaagaccatggccaagcccacg
aagttcgaccgcgtcgtccgaagggaagtctgccggattatcacccgcggtacccaaacc
tacagtgtgttggacggtgctccttcagagagccagagcaagttcctcctgagcttaaag
gaaaaggctgaagatgagagctctggacgccatcgcacctatggcgtttgcttcgcagac
acatcagtgggatatttccacatcggtcagttctcagatgatcgccactgctcacggcta
cgcaccttaattgcacacttcccacctgctgaggtcctcttcgaaaagagtaacccgtct
gccgagacccgcaaaatcttgaaggcgtctctgtcctccgcgctgcaggaagggctgaac
gcagggacacagttttgggatgctcagaagacgctgaaaaccctctcagaggagaattac
tttgaggaggcggctggagacggattcctccctgcgttcctgcggaggatgaccttggag
agcgactccttgtgtctgtcccctaaggaaggctacgagttggcgctgtcggctttaggc
ggctgcatcttttacctgaagaaatgtctggtcgacaaagagctgctctccatggccaac
tttgaagagtatgtccctgttgatgtggagttagagaaagctgctggacccgccagtttt
ttctcccagacccgtcagcggatggtcctggacggtgtgacgctggcgaacctggagatc
ttccagaacggttcagggggaactgaagggacgctgttggagcgtttagactcctgctct
actccgtttggtaagaggttgctgaagcagtggctctgcgctccgttgtgtaaccccgcc
tccatcagggacaggctggacgccatggacgacctgattgcagcgcaggctcaggccgcc
gacgtctcagagctgctgaagaagcttccagatctggagcggcttttgagtaaaatccac
agcattggcacccctctgaagggccaggaccacccggactctagagcggtgctctatgag
gaagtcacctatagcaagcgcaagattgctgatttcctatcagcgctagaaggcttcaaa
accatgcaagagatcatttctgctttcactccaacttcaggcgacattcgctccacgctg
cttcgtcagattgtcagcctgaagacagaagaggacggcctcttcccagatctgtcggca
gagctgaagcgctgggaaacagctttcgaccaccagaaagcccgcaccactggagtcata
acccctaagactggcttcgatccggagttcgaccaggctctcgcagaaatcaaaacctgc
gaacgggacctgcaggactatctggagcggcagaagaagaggctcggctgtaagaacatg
gcgtactggggaaccgggcggaaccgctttcagatggaagttcccgacagtgtttcggag
aggaacatccccgaggagtatgaagtgaaatccaccaagaaaggctataagcgctacgtg
acgaaggagagcgagcggctcttctcagagctgcagggattcgaagagaagagagacgca
gcgctgaaggactgcatgaggaggctcttctacaactttgacaagaactacagagactgg
aggacggctgtggaatgcatggccgtgctggatgttctgctggctttgtcccgctacagt
ctgggtggcgacgggccgatggccagaccccaggtggttctaccagaggacaatgaccgt
ggcacgccgttcattaacctcaccggatcccgtcacccgtgtgtgactaaaacgtttttt
ggggatgacttcattcctaatgacatctttatcggttgccctgggaacagtgaaggtgat
gaggtggaaggtcgcgcctcatgtgtccttgtaacgggtccaaacatgggggggaaatct
accctaatgagacagtgtggacttgtgattatcctagcccagctcggatgctacgttcca
gctgagagcctttgcttcactccagtcgatcgggtcttcactcggctgggagcatcagat
cgaattatggctggtgagagcaccttctacgtggagctcagtgagacggccagcatcctg
caccacgccaccaggcattctctggtgctccttgatgaactcggaaggggcacggctaca
tatgacggcacagccatcgccagcgctgttgtgaaggagcttgctgataagatctgctgt
cgcactctgttctccacgcattaccactccctagtggaggactatgctaacaacgccact
gtgcgactgggccacatggcgtgcatggtggagaacgaatgtgaggatcccagtcaggaa
accatcacgttcctctacaagttcatcaccggcgcttgtccgaagagctacggcttcaac
gcggcgcggctcgccaacctgccagaggaggtcatccagtctggacacaggaaggccaga
gagtttgagagaagcaccatcagcctcagactattcaggaaactctgccagttcgctgaa
gatgctgctccagacaacgcacgcttcacttcactcgttcaactgcttaacaccctgtag
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