Xiphophorus couchianus (Monterrey platyfish): 114137879
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Entry
114137879 CDS
T05908
Name
(RefSeq) E3 ubiquitin-protein ligase parkin-like
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04120
Ubiquitin mediated proteolysis
xco04137
Mitophagy - animal
xco04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
114137879
04120 Ubiquitin mediated proteolysis
114137879
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
114137879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114137879
04121 Ubiquitin system [BR:
xco04121
]
114137879
03029 Mitochondrial biogenesis [BR:
xco03029
]
114137879
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
114137879
Membrane trafficking [BR:
xco04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
114137879
Aggrephagy
Other aggrephagy associated proteins
114137879
Xenophagy
Other xenophagy associated proteins
114137879
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
114137879
Mitochondrial biogenesis [BR:
xco03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
114137879
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
IBR_1
IBR
Rcat_RNF216
Motif
Other DBs
NCBI-GeneID:
114137879
NCBI-ProteinID:
XP_027862512
LinkDB
All DBs
Position
22:25837085..25839610
Genome browser
AA seq
326 aa
AA seq
DB search
MTLTCGVCSTFFVYCKRCSSIQSGKLRVRCRRCRQMTLTLCRGPSCWDDVLLPGRIHGVC
QFEGCHGNEAEFYMKCASHPTSEDDVSVALDLVLSNTRSVPCIGCTDIRDVVLVFQCSDR
HVICLDCFQRYCQTRLNERQFIYDAVIGYSLPCAAGCENSLIRELHHFRILGDNQYGRYQ
QYGAEECLLTAGGVLCPSPGCGAGLLPPEGSRKVECDRRLLGCGFVFCRDCREGFHEGPC
EGPAAPPPADACQGFVVEDEASQRGRWDRASLQLIQESTRRCPRCLVPVERNGGCMHMQC
TQCRAEWCWLCGAPWNRECMGNHWFG
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcacctgtggtgtgtgtagtaccttcttcgtgtactgtaagcgctgctcatcc
atccagtcagggaaactccgtgttcgctgtcggcgctgcagacagatgacgctgacgctt
tgcaggggtccttcctgctgggatgatgttctcctgcctggacggattcatggcgtctgt
cagtttgaaggttgccacggcaatgaggcggagttctacatgaaatgtgcgtctcacccc
acgtcagaggacgacgtctcggtggcgctggacctcgtcctgtccaacaccagaagcgtt
ccctgcatcggctgcaccgacatcagggacgtggttctggtcttccagtgttcggaccgt
catgtgatctgcctggactgcttccagcgctactgccagacgcggctcaacgagcggcag
tttatttatgacgctgtgattggatactcgttgccatgtgcagctggctgtgaaaactct
ctgatcagagagttacatcacttcaggatcctgggagacaatcagtacggccgctaccag
cagtacggcgctgaggagtgtctgctgaccgccggcggcgtgctgtgcccctcacctggc
tgtggggcggggcttctaccacctgagggcagcaggaaggtggagtgtgaccggcggctg
ctgggctgtggcttcgtcttctgcagggactgcagggagggcttccatgaggggccgtgc
gagggccctgcggccccgcccccagcggacgcctgccagggcttcgtggtggaggacgag
gcgtctcagagagggaggtgggaccgggcgtctctgcagctcatccaggagtcgacccgg
cgctgcccgcgctgcctggtacctgtggagaggaacggcggctgcatgcacatgcagtgt
acccaatgccgagcggagtggtgctggctctgcggcgccccctggaacagggagtgcatg
gggaaccactggtttggatag
DBGET
integrated database retrieval system
