Xiphophorus couchianus (Monterrey platyfish): 114138026
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Entry
114138026 CDS
T05908
Symbol
nfkb2
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04010
MAPK signaling pathway
xco04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
114138026 (nfkb2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
114138026 (nfkb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114138026 (nfkb2)
Transcription factors [BR:
xco03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
114138026 (nfkb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_4
Ank_5
Death
CIS_TMP
Motif
Other DBs
NCBI-GeneID:
114138026
NCBI-ProteinID:
XP_027862837
LinkDB
All DBs
Position
22:25494921..25505581
Genome browser
AA seq
895 aa
AA seq
DB search
MAGALRMTEPQFVSYGDDNMQLANFLSYDFIPPMEIKTEPYIPETAHGPYIQIIEEPKQR
GFRFRYECEGPSHGGLPGASSEKNRRTYPTVKINNYVGHARVEVQLVTHTDPARVHAHSL
VGRHCNENGTCSLDIGPSDLTASFSNLGILHVTKKGVVEVLTRRLRDERRRQKGTHCSLT
DGEESSILKEAKELGKVMDLNIVRLRFTAFLQDSNGGFTRALKPVVSNPIYDSKSPNASN
LKISRMDKTCGSVLGGDEIFLLCDKVQKDDIEIRFYEEDEEGCWEAFGDFSPTDVHKQYA
IVFKTPPYHNAEIERPVTVFLQLRRKKAGDSSDPKQFTYVPRVQDKEEVQRKKQKPLPHY
DSWRGGRGRDGGPGAGGFGSGPGGPGGSGFQFSQMNGGPGGGAFYTGAFTGFTSGGGAQM
SGSAPPASGSAPQQVEGPPGSAVQQQLLRIAASLSSQVSQSARQTAAALLQYCSTGDARV
LLALQRHLCGIQDANGDTPLHLAIIHQQTAVIQQLIQTLLSSQQHAVLNTCNHLQQTPLH
LAVITRQLKVAEVLLRAGADPTLVDKDGRSPLHLAALAGDTATLRLLLAHLGERHAHLVN
TPDYHGLQPLHLAVRRDGERCLRLLVEGGAKINAAELKSGNTPLHLAVRENLFKVACTLI
TELKADVNTCTFGGNTPLHLAASLGFPTLCSMLIAAGADKNMENDEPLYFSSSDEEAEPD
EPARGDDEQPIISRKRRARGHTPLDLATCQKVRNLLTAKRSPKPSCHADKKIRTGSEDGE
RSGLDEETLSRLVAVLSVGDVPWMKLAEKLGMMTLTHLYEDSDTPCQHLLQHYKLGGGPV
EGLVEALQALGLTEGVRLLRNTELRDDKHSSDATVDSGFSSQPMEEQQEEEMTNQ
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggccggagcgctcaggatgactgaacctcagttcgtgagctacggagacgacaacatg
cagttagcaaacttcctctcctatgacttcattcctccgatggagatcaagacggagccg
tacatacctgagacagctcacggtccgtacatccagatcattgaggaacccaaacagaga
gggttccggttccgttacgagtgcgagggcccgtcccacggcgggttgccgggggcgtcc
agcgagaagaaccggcggacttacccgaccgtgaagatcaacaactacgtgggccacgcc
cgggtggaggtccagctggtgacccacaccgacccggcccgggtccacgctcacagcctg
gtgggacgccactgcaacgagaacgggacctgcagcctggacatcggacccagcgacctg
accgcctcgttcagcaacctgggaatcctccatgtgaccaagaagggcgtggtcgaggtt
ctgacccgacggctccgagacgagaggcggagacagaaaggaactcactgttcgctcaca
gacggcgaggagtcgtccatcttgaaggaggccaaggagctggggaaagtcatggacctg
aacatcgtccgtcttcgcttcaccgccttcctgcaggacagcaacggcggattcaccagg
gcgctcaaacccgtggtgtccaaccccatctacgacagcaagtctcccaatgcatccaac
ctgaagatctcgcgcatggacaagacgtgcggatcggtgctgggaggagacgagatcttc
ctgctgtgtgacaaagtccagaaagacgacatcgagatccgtttctatgaggaagacgag
gaaggatgctgggaggccttcggggacttctctccgaccgacgtccacaagcagtacgcc
atcgtgttcaagacgccgccgtaccacaacgccgagatcgagcggccggtcaccgtcttc
ctgcagctccgccgcaagaaggccggcgacagcagcgaccccaagcagttcacctacgtc
ccgcgggtccaagacaaagaggaagtccagaggaagaagcagaagccgctgccgcactat
gactcctggagaggagggcgagggcgcgacggagggcccggcgccggcggcttcggatca
ggacccggaggacccggaggatcaggtttccagttctcccagatgaacggagggccagga
ggcggagctttctacaccggagccttcacaggcttcacctcagggggaggagcccagatg
tcaggctccgcccctccggcttcaggctccgcccctcagcaggttgagggcccgccaggc
tcggctgtgcagcagcagctgcttcggatcgccgcctccctcagcagccaggtgtcgcag
agcgcccggcagacggccgccgccctgctgcagtactgcagcaccggagacgcccgcgtc
ctgctggcgctgcagagacacctgtgtggcatccaggatgccaacggagacacgccgctg
cacctggccatcattcaccagcagacggccgtcatccagcagctgatccagacgctgctg
agcagccagcagcacgccgtgctcaacacctgcaaccacctgcagcagacaccgctccac
ctggcggtcatcacgcggcagctgaaggtagcagaggtgctgctgcgggcgggggccgac
cccaccctggtggacaaagatggccgcagcccgcttcacctggctgcgctggccggagac
acggccacgctgcgcctcctgctggcccacctgggagagcgccacgcacacctggtgaac
acgccagactaccacggtctgcagccgcttcacctggccgtcaggagggacggcgagcgc
tgcctccgcctgctggtagagggcggagccaagatcaacgccgccgagctgaagagcggg
aacacgccgctgcacctggccgtcagagagaacctgttcaaagtggcctgcacgctcatc
actgagctgaaggccgacgtcaacacctgcaccttcggaggaaacacgccgctgcacctg
gcggccagcctgggcttccccacgctctgctccatgctgatcgctgcaggtgccgataag
aacatggagaacgacgagccgctgtacttcagctcgtcagacgaggaggcggagccggac
gaaccagccagaggagacgacgagcagccaatcatcagccggaagaggcgggccagaggc
cacacccccctggacctggccacctgtcagaaggtgaggaacctgctgaccgccaagcgg
agcccgaagcccagttgccacgctgacaaaaagatccggaccggcagcgaagacggtgag
cggtcgggattggacgaggagacactgagccggctggtggcggtgctgagcgtcggcgac
gttccctggatgaagctggccgagaagctgggcatgatgacgctgacgcacctgtacgag
gacagcgacacgccctgccagcacctgctgcagcactacaagctgggtggaggtccggtt
gaaggcctggtggaggcactgcaggctctgggtctgacggagggagtccggctgctgagg
aacacggagctgcgagacgacaagcacagctcagacgccacggtggacagcggcttcagc
agccagccaatggaggagcagcaggaggaggagatgaccaatcaatga
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