Xiphophorus couchianus (Monterrey platyfish): 114138102
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Entry
114138102 CDS
T05908
Symbol
ccdc88a
Name
(RefSeq) girdin isoform X1
KO
K25392
girdin
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xco03037
]
114138102 (ccdc88a)
Cilium and associated proteins [BR:
xco03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
114138102 (ccdc88a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HOOK_N
HOOK
DUF4472
KASH_CCD
CHD5
Motif
Other DBs
NCBI-GeneID:
114138102
NCBI-ProteinID:
XP_027862949
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All DBs
Position
22:complement(4737831..4800496)
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AA seq
2023 aa
AA seq
DB search
MENEVFTPLLEQFLLTPLVCWVKSVGHSTVTDGSKLSEYIELVDGIYLNEIMFEIYPKAT
VQRTNKKVNNDPTLRIQNLSIVIRQIKAYYQESLQQLVMMPLPNVLVLGRNPLSEQGLEE
MRKMLLLLLGCAVQCEKKEEYIERIQTLDFDTKAAIASHIQEVTHNQENVVDLQWLESGE
MPPEDLDSLSRNLAFHLKRLVDERDTQLETIVELTQERDCVQLSPLAPIATQSPGDSPSM
RRTESRQHLSVELADAKAKIRRLRQELEEKSEQLLDTRQELENMEVELKRIQQESYQLLS
DARSARAYRDELDALREKAIRVDKLESELCRYKERLHDIDFYKARVEELKEDNQILLETK
TMLEEQLDSTRTRSDKLHLLEKENLQLKSKMHDLEMERDLDRKRMEELLEENLVLEMAQK
QSMDESLHLGWELEQLSKTPELTDAPQKSLGEEVNELTSSRLLKLEKENQALLKKVEDLK
GTASQDNTAKLTKANQENQKLNQKLERLENELMVDRESLRSAESLSTDLMKEKALLEKTL
ETLRENSERQMKGLEQENKHLSQTISSLRQRCQVGAEARVKDVEKENRVLHESICETTGK
LNKLEFERKQLRKELELMKEKGERAEELEIQLQKLERENESLQKKVATLGITCEKVSSLE
KENSELEMEGRRLKKKLDGLKNMAFQLEALEKENGQLEQENLELRRSTETLRSAGAKAAQ
LEAENRELENERTQLKRSLELLKASFKKTERLEVSYQGLDTENQRLQKALENSSKKIQQL
EAELQEVETENQTLQRNLEELKISSKRLEQLEQENKTLELESSQLEKDKKLLEKENKRLR
QQAEIRDSKLDDDNQRIAALEKENRTMGKEMIFFRDSCTRVKDLEKENKELVKQGSIDKK
TLMTLREELVSEKLRTQQMNNDLEKLTHELEKIGLNKERLLHDENSDDRFKLLETKLEST
LKSSLEIKEEKIAALEARLQESSNLNQQLRQELKTVKKNYEALRQREEEERMVHSSPPKG
VENSQTVNKWEKESHEATRELLKVKDRLIEVERNNATLQAEKVALRSQLKQLETQSSNLQ
AQIVAVQRQTASLQENNTTLQTQNAKLQVENSTLSSQSAALMAQNAQLQSQQSSVEGERE
GALREKEELRATYELLLRDHEKLAALHERQAAEYEALIGKHGGLKTSHKSLEQQHRDLED
RYKQLLQRKGELEELEKNLKEQQDKMAQENQSHQATADQCKLLKEENDRLNTVYRLLMKD
NESLQVDHKNIKSQLNSAKLEQTKLEAEFSKLKEQYQQLDITSTKLTNQCELLSQLKGNL
EEENRHLLDQIQTLMLQNRTLLEQTMESKDLFHVEQRQYIDKLNELRRQKEKLEEKIMDQ
YKFFDPSPPRRRGNWITLKMKKLIKPRSRERMRSLTLTPSRSELGESVFTFVPDSQDSSS
IGSGSNSLDDALTQKRSMRRRGQHSHAQSQGSSNAIKRLPFMRNRSKDKDKDKAIYRRSM
SMNDLLQTMAVAGVSGSQWAGSTENLDRPEGGDGSMTGSSRRSGQRMKELALSTNAIDCA
ALTLPSARRAKLQLQVKDNVSCEDVAGSLDDPKSQGRKGSSGALALCHPVELKAMCKVPC
RICTSRPSSLHSNRTSSNSNNNSHLTSPLEGKGTLNGSLSRPQSESSGEFSLSLDQEVWS
SSGSSPVQQPASLRSSHQSPLQLRRSLEPSGTAAVSAQAQIRKMGSPSEVLSLQQFLDEG
IDPAESGSQENLTVDSPRLSTSSEHAQKDRASTKARGILRSSSGRAAPTSADRALRSSGQ
PGRPSLRKAESTRVKGSAPLRSSLSSQGKATSVSERLDSASSSSTLPRASSVISTAEGTT
RRTSIHDLLSKDHRQPVSVDASPHTPSPKAGVRSQPTPSEYHPNIASPMPKSVSLPCHSS
EDPDLDSLESFLGPSFTAESVFMDSIFSESAENLPFLSLNPTLVSNISGPPAQPRPGPNQ
SPHSQSARLTAYDDGIDPSSVTESGQTLSPEESQSLWYEYGCV
NT seq
6072 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgaggttttcaccccactgctggagcagttcctgctcacgcctctggtctgc
tgggtaaagagtgttgggcactcgacagtgaccgatggcagtaaattgtcggaatacatc
gagttggtggatgggatttacctgaacgagatcatgtttgagatatatccaaaagcgaca
gtgcagaggaccaacaagaaagtaaacaatgaccctacattgcggattcagaacctttct
attgtcatcaggcagattaaagcctactatcaggagagtctccagcagttggtgatgatg
cctttgccaaacgttctggttctgggccggaacccactctctgaacaaggcctggaggag
atgaggaaaatgttgctgctgcttttaggatgtgctgttcagtgtgagaagaaagaagaa
tacatcgaacgtatccagactctggactttgacaccaaagccgcaatagcatctcacatt
caagaggtgacccataaccaggagaatgtggtggacctgcagtggttggaaagtggagaa
atgccccctgaggatttggacagcctgtcgagaaatctggctttccacctcaaacgtctg
gtggatgaaagggacacacagctggagacgatcgtggagctcacccaggagagagactgt
gtgcagctctctcccctggctcccatcgccacccagtctcctggtgactctcccagcatg
aggaggacagagagtcgacagcacctctcggtggagctggctgatgccaaggccaaaatc
agacgccttcgacaggaactggaggaaaaaagcgagcagcttctggacaccaggcaggag
ctggagaacatggaggtggagctgaagagaatccagcaggagagctaccagctgctgtcc
gacgctcgctcggctcgggcctaccgcgatgagctggacgcactccgagaaaaagccata
cgtgtcgacaaactggagagcgagctctgccggtacaaggagagacttcatgacattgac
ttctacaaggccagagtcgaggagctaaaggaggacaaccagattttgctagaaacaaag
acgatgttggaggagcagctggattccaccaggacgcggtccgacaaactacaccttctg
gagaaagagaatctccagctcaagtccaagatgcatgatctggagatggagcgggacctt
gaccggaagcgaatggaggagctgttggaggagaatctcgtgttggagatggcccagaaa
cagagcatggacgagtcgctgcacctgggctgggagctggagcaattatcaaagacacca
gagctgactgatgctccgcagaagtctttgggcgaggaggtgaatgaactgacctccagt
cgcctgttaaagctggagaaagaaaatcaagctctgctgaagaaggtggaggatctcaaa
ggaacagccagtcaggacaacacagctaaactgaccaaagccaaccaagaaaaccagaaa
cttaaccagaaattggagcgactggagaatgaactaatggtggacagggagtcgctccgt
agtgccgagtcactgagtacggacctgatgaaggaaaaggctttgttggagaagactctg
gagacactcagggaaaactcagagagacagatgaagggtctagagcaggagaacaagcac
ctgagccaaaccatttcctcgctgcgtcaacgctgccaggttggagccgaggcccgcgtg
aaagacgtggagaaggagaacagagttcttcacgagtcgatctgcgagaccacgggcaaa
ctgaataagctggaatttgaaaggaagcagctacgaaaggagcttgaattgatgaaggag
aaaggtgagagagcagaagagttggagattcagttgcagaagctggaaagagaaaatgaa
agcctgcagaagaaagttgccactcttggaattacctgtgagaaggtttcttctttggag
aaggagaactctgagttggagatggagggccgccgtctaaagaaaaaactggacggtctc
aaaaatatggctttccagttagaggcgctggaaaaagagaacggccagctggaacaggag
aacctggagctccggcgctcaaccgagacgctccggtcagcgggggcaaaggctgctcag
ctggaagccgagaacagggagctggagaacgagaggacccagctgaagcgcagcttggaa
ctgcttaaagcctcgtttaagaagacagaaagattagaggtgagctaccaaggtctggac
acagagaaccagcggcttcagaaggctttggagaacagcagcaagaagatccagcagctg
gaggcagaattgcaagaggtagagactgagaatcaaacccttcagcgtaacctggaggaa
ctgaagatctcgagtaaacggctggagcagctggagcaggagaacaaaactctggaactg
gaaagctcccagctggagaaagataagaagcttctggagaaggagaacaagcggctgagg
cagcaggccgagatccgcgactccaagctggatgacgacaaccaacggattgccgccttg
gagaaggagaaccgcaccatgggcaaggagatgatcttcttcagggactcatgtacgaga
gtcaaggacctggagaaagagaacaaggagctggtcaaacagggcagtatagataagaag
acgctgatgacactaagagaggagcttgtgagtgagaaactgcggacgcagcagatgaat
aatgaccttgagaaacttactcatgaattggagaaaattggactgaacaaagagagactc
ctgcacgatgagaactccgatgacaggtttaagctgcttgaaaccaaactggagtcaact
ctgaaatcatctttggagatcaaagaggagaaaatcgctgctttagaggcgcgattacag
gaatcctccaacctcaaccagcaacttcggcaggagctaaaaacggtaaagaaaaactat
gaggcgcttcgccagagagaggaggaggaaaggatggtgcacagctctcccccaaaagga
gtggaaaactcccagactgtcaataaatgggaaaaggagagccatgaagccaccagggag
ctgctgaaagtcaaagacagactaattgaagtggagagaaacaatgctacgctgcaggct
gagaaggtggctctgagaagccaactcaaacaactggaaactcagagctccaacctgcag
gcgcagattgtagcggtgcagaggcagaccgcctccttacaggagaacaacaccactctg
cagacgcaaaatgccaaactgcaggtggagaactccaccctgagctctcaaagcgcggcc
ctcatggcccagaatgcccagctgcagagccagcagagcagcgtggagggagaacgggag
ggagcgctgagagagaaggaggagctgagggcgacctacgagctgctgctccgggatcac
gagaagctggcggcgctccacgagcgacaggcggcagagtacgaagctctgattgggaaa
cacggcggcctgaagacctctcacaagagcctggagcaacagcacagagacttggaggac
aggtacaagcagctcctgcagagaaagggtgagctggaggagttggagaaaaacctgaag
gagcaacaggacaagatggcacaggagaatcagagccaccaagccacagctgaccagtgc
aaactgctcaaagaggaaaacgacaggctgaacacagtctatcgcctgctgatgaaggac
aacgagagtctgcaggtggaccataagaacataaagagccaactgaacagtgcaaagctg
gagcagaccaagctagaagccgagttctccaaactcaaggagcaataccagcagctggac
atcacctccactaaactcaccaaccagtgtgagttgttgagccagctgaaaggcaacttg
gaggaggagaaccgtcacctcttggaccagatccagaccctgatgctgcagaaccgcaca
cttctggagcagacgatggagagcaaggacctgttccatgtagagcaaagacaatacata
gacaagctaaacgagttgaggagacagaaggaaaaactcgaggagaaaataatggaccag
tataaattctttgatccttcgcctccacgcaggcgtggcaactggatcactctgaagatg
aagaagctgatcaagccaaggagccgggagaggatgcgttctctcacgctgaccccctct
cgttcggagctgggggaaagcgttttcacttttgttccagacagccaggacagctcctcc
atcggctctgggtccaactcgttggatgacgcgctcacacaaaagaggagcatgagaagg
agagggcagcattcccatgcccaaagtcagggttcgtccaatgctataaagaggttgcct
ttcatgaggaacagatccaaggacaaagacaaagacaaggccatctaccgacgctcgatg
tccatgaacgacttgctgcagacgatggcagtggccggtgtttccgggtcacagtgggcg
ggcagcacggagaatctggaccgacctgaaggaggagacggcagcatgacgggcagcagc
aggcgcagcggacagcgcatgaaggagctggccctgtccaccaacgccatcgactgcgct
gcactaacactgccgtctgcgaggcgggctaaactccagcttcaggtcaaagacaatgtc
tcatgtgaggatgttgctggttccttagatgaccctaagagtcaaggccggaaggggtct
agcggtgctctcgctttgtgtcatcctgttgagctgaaggctatgtgcaaagtgccctgt
agaatctgtacctccagaccctccagcctccatagcaacaggacaagtagcaatagtaac
aataactcacacctcacctctcctctggagggcaaaggcacactgaatggcagtcttagc
aggcctcagagtgagagcagcggggagttcagcttgagcctggaccaggaggtgtggtcc
agtagtggcagcagccccgtccagcagcccgcctccttgcgctcctcccaccagagcccc
ctgcagctgcgcaggtccctggagccgtccggcactgccgccgtctccgctcaggcacaa
atcaggaagatgggctcccccagcgaggttctgtccctgcagcagttcctagatgagggt
attgatcctgcagagtctggcagtcaggagaacctcacggtggattcccctcgcctctcc
acttcttctgagcacgctcagaaagatcgcgcctccaccaaggcgcggggcattttacgc
tccagcagtgggagagcggcgccgaccagcgccgaccgggctctgaggtcctcgggacag
cccggccggccgagcctgcggaaagccgagagcacgcgcgtcaaaggctccgcccctctc
cgctccagcctctcctcccaggggaaagccacgtccgtctctgagcgcctggactctgcc
tcctcctcctccacactgccccgggccagcagcgtcatctcgacagccgaaggtaccacc
aggcgcaccagcatccatgacctactgtccaaagaccaccggcagcccgtgtctgttgac
gcctcccctcacaccccctccccaaaggctggagtacgctcgcagccgacacccagtgag
taccaccccaacatcgcctcccccatgcccaaatcagtcagcctaccctgccacagctca
gaggaccccgacctcgacagcctcgagtctttcctcggcccctccttcaccgcagagtca
gtgttcatggactccatctttagcgagtcagcagaaaatctccccttcctgtccctgaac
cccaccctagtcagcaacatcagcggccccccggcccagcctcgccctgggccgaaccag
agcccacacagccagtcagcccgcctgacggcgtatgatgatggtattgatccaagtagt
gttactgagtcagggcagactctgagcccagaggagagccagtctctgtggtacgagtac
ggctgtgtgtga
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integrated database retrieval system
