Xiphophorus couchianus (Monterrey platyfish): 114138208
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Entry
114138208 CDS
T05908
Symbol
tarbp1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xco03016
]
114138208 (tarbp1)
03036 Chromosome and associated proteins [BR:
xco03036
]
114138208 (tarbp1)
Enzymes [BR:
xco01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
114138208 (tarbp1)
Transfer RNA biogenesis [BR:
xco03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
114138208 (tarbp1)
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
114138208 (tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
114138208
NCBI-ProteinID:
XP_027863133
LinkDB
All DBs
Position
22:14746911..14760909
Genome browser
AA seq
1626 aa
AA seq
DB search
MSSTLIQAVLSSSPNYDTLFESLCWPEDSWPQTERVEALTALIESLGPFLTDSDSAQTPL
TGVNRSGIRDKIESVIWSKCLPFLCRLSAEARDDTRCRESTATVCRLLGVSVGVCGENVR
TGVVSSILPSLQRMSEEEPLTPGTLSVQVAAEVLAALMPLLTADEELTLDTLNCALSSVR
SLPDDLVSKVMVRIILTSLSCCSDARSNIILKRVLDDVCSWHSTERTPVVTERTLLCLTV
LSDHLLKSHIVTSSECREADPRLRPQFWIICQDGLTHRDSVSRKRALYLLKRCAALSEEE
GFDSRSSTSEDGETLFKWAPSKSKPLREFWEDYTLVMETLEENQVHVVRPVLNRIDTLIQ
ATVNDSEGSGLFHPSWLLCVYQRMFHSENKSLMREGVCHLLQLQVLQQPAFAAAFSQFVV
GSFMNVLSETSLFCRSPGQSVGDCPELAVKLQVFLVTFFTSLPSEDRGCVLFQLIQQLSS
KHWCAVPLLFVCQAFSHLPPCPLLKIGGLSALREVLRCTMITHQVLLRGAAQCFLLKSAL
SLTDVNEVTVDDIFSFLMHFRADESLCRGTELWNELCIWLLEHECSFKSRILDGDFTDDP
TQKETIRAYVQQEVLAYLRVPASTGQAERLPDTREADKLARALLLCVDMERRRLGGETSE
ILGSLLSPLLDTLSRVYTNIYLPVRKSDKSLQLLLRLLQLGTKPCGQQKEVEEDEVMFAI
EQTFLKLVDPVQDFILRRLCGELQELFDVERAELYLCVLRQLVVMCSSSSRCPKNIQQFA
FPKLIKYSLSVLLEPAQQVPSVANQVSKAVSMASLAAVCELLQQGGISMRADTASALKSM
NDYFCTLKTSSQFQSSLGNINKSLMKPQLLGSSSDLEAQGLLQQDWGRIAANFLRDQWIC
LNFLIRTVGIKASVEISQVSETLGAALSCSVEALALLPSDFVLPVLNVMNTLLPQLVQDQ
ENLCVQAVTLSWELVQGLSTNAHDFWPALKGFISMAFQHKLLQLTHDQAPILTTALTKIF
TDLLELSQSKSGVFGVLLQHCCQTWLPNDPAIRDQAAAVFSSVFNHLDIVTEACVYGPVF
RRDQRLVLDVQIYVEQLGAKCAANVGVTSDTRDDQLPRTCVLTFLSRLDPSDQQHQRFME
ELVMKLLRKDSLISKSKVRYYGNSLQHRVKNRAWQTLLLLLPKLKEDFVATLVKHVFEAG
FCSNQASVKYLIEWMMILILVKYPHHIDKFWSCFNFDHEKTKTSICTFLSVLVHFSVIIP
HVKDKVGQLRRALDIILQSCFNHNFSVRLYALLALKKVWSLAEKEEEDDEAFQGLSSVVT
ACLNQAETMQSTGNANKNWLRIQGHFFFGAFHPIRDYSMETIFQTFPSLSELADDEWIPP
WKFEKLSFFPESLLIPLRNSAPELGQLQAGDWVQQDRSEQDKEERWSEVQKKITPWRSGI
NDQEPELKLVPAQRAARLGKQHGTLLVVASLIDKPTNLGGLCRTCEIFGASGLVLDSLHH
LNDKHFQSLSVSAELWLPLLEVKPVELTHFLQVKKSEGYCIVGVEQTANSQKLQDFKFPE
KTLLLLGNEREGIPANLLQMLDVCVEIPQQGIIRSLNVHVSAALLIWEYTRQRLITGSQE
VHSHCG
NT seq
4881 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccactttgattcaggcggtactgagcagctctcctaattacgatactttgttt
gaatccctgtgctggccggaggattcgtggccgcagacggagcgtgttgaggcgctcact
gctctcatcgaatctctcggaccgtttctgaccgattcagattcggctcagactccactg
acaggtgtaaacagaagtggcattcgtgacaaaattgagtcggtcatttggtcgaaatgt
ctgccatttctttgcagactctcggcagaagcaagggatgatacgcgctgcagagagagc
acagccactgtctgcagattgctcggtgtctccgtgggtgtttgcggggaaaacgtgcgg
actggagtggtttcatcaatcctgccgtcgttgcagcggatgtcagaggaggagccgctt
acgccggggactctcagtgtgcaggttgctgctgaagtcctggctgctctcatgcctctt
cttacagcggatgaagaactcacactcgacactttaaactgcgcgctgtcctctgtcagg
tcactccccgatgatctggtatccaaagtaatggtcaggatcattttaacttcgctcagt
tgctgcagcgatgcgaggtccaacatcatcctcaagcgcgtcctggatgatgtttgcagc
tggcactccacggagcgaacaccggtggtcacagagaggacgctgctgtgtttgaccgtc
ctgtcggaccatctcctgaaatctcacatcgtcacctcctccgagtgccgcgaggccgac
ccacgtctgcgtcctcagttctggataatttgtcaggacggactgacgcacagggacagc
gtgtcacgcaagagggcactgtacctgttgaaaagatgcgcagcattatccgaagaggag
ggctttgattcccgttcttctacatcagaggatggagagacattgtttaaatgggccccc
agcaaaagcaaaccactgagggagttctgggaggattacactctggtgatggaaacactg
gaggagaatcaggttcatgttgttcggccagttttaaacagaattgatacgttaatccaa
gcaactgtgaatgatagtgaagggtcaggcctgttccacccatcctggctgctgtgtgtg
taccagcgcatgttccatagtgagaataaatccttaatgagagaaggagtgtgccatctg
cttcagctgcaggttcttcagcagccggcctttgcagcagccttttctcagtttgtcgtg
ggttccttcatgaatgttctgtctgaaacatcccttttctgtagatcgccagggcagagt
gtaggagactgtcctgagctggcagttaagctccaggtcttcctggtcaccttcttcaca
agcctgccatcggaggacagaggttgtgttttgtttcagctgattcagcagctcagctcc
aagcactggtgtgccgtaccgctcctctttgtctgtcaggctttttcacatctccctcca
tgtcctctgctgaagatcggcggcctatctgctctacgggaggtgctacgctgcaccatg
atcactcatcaggttctgctaagaggagctgcacagtgttttttactaaagagcgccctc
tctctgacagatgtgaatgaagtgactgtagatgacatatttagtttcctgatgcatttt
cgtgctgatgagtctttgtgtagggggacagagctgtggaatgagttgtgcatctggtta
ttggaacatgaatgcagcttcaagtccagaattctggacggcgatttcaccgatgatccc
acacaaaaagaaaccataagagcctatgttcaacaagaggtacttgcttatcttcgtgtt
ccagcaagcacaggtcaggcagaacggttacctgacactagagaggctgataagctggca
agagcccttctgctctgtgtggacatggagaggaggcgactgggaggagaaaccagtgaa
attctgggttcactgctgtctccgctactggacaccctgagcagagtctacaccaatatc
tacctgcctgtccgtaaaagtgacaagagtctgcagctcctgcttagactgctgcagctt
gggacgaagccttgtggtcagcaaaaagaagtggaagaggatgaggtgatgtttgctatt
gaacaaacctttcttaaacttgtcgacccagtccaggattttatcctgaggaggctgtgt
ggggagctgcaggagctctttgacgttgaacgggctgagctgtatctgtgtgtcctgagg
cagctggttgttatgtgcagctcttcgtctcgctgccccaagaacatccagcagtttgct
ttccccaaactcataaagtacagcctttcagttttgcttgagccagcccaacaggtccca
tctgtggccaatcaggtgtccaaggctgtcagtatggcttctttggctgctgtgtgtgag
ctcttacagcaaggaggaattagtatgagagcagatactgcttctgccctgaagtccatg
aatgattatttctgcactttgaagacttcctcacagtttcagtcatctctcggaaacatt
aacaaatccttgatgaaaccacagctattaggtagctcaagtgaccttgaagcccaaggc
ctcctgcaacaggactggggacgcattgctgccaacttcttgcgggaccagtggatttgt
ctaaacttcctgattaggactgtagggattaaagcatctgtagaaatttcccaagtgtcc
gagaccctcggagctgctctgagttgcagcgttgaggccctggctctgctgcccagtgac
tttgtgctgcccgtgctaaacgtcatgaacacgctgctgccacaattggtgcaggatcag
gagaatctctgtgtgcaggcggtcactctgagttgggagcttgtacaggggcttagcaca
aatgctcatgacttctggccagcactaaagggcttcatctccatggccttccagcacaaa
ctcctgcagctgacacatgatcaggctccgattctcacgactgcactgacaaagattttc
acagacttgttggagctgtctcagtcgaagagcggtgtcttcggtgtgctacttcagcac
tgctgtcagacctggctgcccaatgacccagccatcagggatcaggctgctgctgtgttc
tctagtgtttttaaccacctggatatagtcactgaggcctgtgtttatggaccagtgttc
aggagagaccaacgactcgtcctggacgtccagatatatgtagagcaacttggtgcaaag
tgtgccgctaatgttggagttacaagtgataccagggatgatcaactgccccgcacatgt
gtgctgacatttcttagccgcctggatccttctgatcagcagcatcagagattcatggag
gaattagtgatgaagctgctgagaaaggacagtctcatatcaaagtccaaagtccgttac
tatggcaactccctgcagcatcgggtcaaaaacagagcatggcaaacactgctgctgttg
cttcccaaactcaaagaggattttgttgccactctggtgaaacacgtctttgaagctgga
ttttgcagcaaccaggcctcagtgaagtacctgattgaatggatgatgattcttattctt
gtcaagtatccacatcatattgacaaattctggagctgcttcaactttgatcacgaaaag
accaagacgagcatctgcaccttcctgtctgtcctggttcacttcagtgtcatcattcca
catgttaaggataaggtcgggcagctgcgtagagctctggacatcatcctgcagtcgtgt
ttcaaccacaacttcagcgtccgactgtatgcattactggcgttgaagaaggtgtggagc
ctcgcagagaaggaggaagaagatgatgaagctttccaggggctgtcttctgtggtgaca
gcctgtctgaaccaggccgagaccatgcagagcaccggaaatgccaacaagaactggctg
aggattcagggtcacttctttttcggagcctttcatcccatcagggattacagcatggag
accatatttcaaacttttcccagtctgtcagagttggccgacgatgagtggatcccaccg
tggaagtttgaaaagctgtcattctttcctgagagtctgttaatcccgttgaggaattct
gctcctgagttgggccagctccaggctggagattgggtccagcaagatcgaagcgagcag
gataaagaggagcgctggtctgaggtgcagaagaagatcacaccgtggaggtcagggatc
aacgatcaggaacccgaactgaagctggttccagctcagcgggcagctcggctgggcaaa
caacacggcactctgctggtggtggcctccttgattgacaagcccactaatttaggaggt
ctctgcagaacatgtgagatatttggggcgagcggtctggttctggacagtctgcaccat
ctcaatgacaaacacttccagtctctgagcgtttcagctgagctttggcttcctttgcta
gaggtgaagcctgtggagctcactcatttcctccaggtaaagaagagcgaaggttactgt
attgtcggagtggagcagactgccaatagtcagaagctccaggacttcaagttccctgaa
aaaactctgctacttctgggcaacgagcgggaaggtattcctgccaatctgctccagatg
ttggacgtgtgtgtggagatcccgcaacaagggatcatccgctcactcaatgtccacgtg
agcgctgccctgttgatctgggaatatacgcggcagcgcctcatcactggatcacaagaa
gtccactcacattgtggttga
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integrated database retrieval system
