Xiphophorus couchianus (Monterrey platyfish): 114138230
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Entry
114138230 CDS
T05908
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM8-like isoform X1
KO
K12001
tripartite motif-containing protein 8 [EC:
2.3.2.27
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114138230
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114138230
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
114138230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_2
TRIM_CC
zf-RING_5
RING_XB3-XBAT31
FliD_C
FAD_binding_7
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
114138230
NCBI-ProteinID:
XP_027863166
LinkDB
All DBs
Position
22:complement(12774986..12788940)
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AA seq
578 aa
AA seq
DB search
MDNKYCAPSVWISTKAMDASWKNCFEEELLCPICLNVFDEPIQLPCKHNFCKGCISEAWA
KESAAVRCPECNHDYDQKPALEKNFKLANIVKRFNALNAEKAPAVLHCVLCRRGPPLPVR
KVCLRCKEPCCQTHVQTHLQQPCPAPGHLLVDIEELSAWTCPTHEEYRLLHCEEEQVALC
PFCYISHCTNQRHTVCDVNTQRVQMQAMLMRQQDRLDCRVQNIDEQLSKLDSDKTLLKEA
VCELKERVRAQYQRMYALLEANQAETVQMLERTYTMYVRKNSQQVLQLNEKRQESEKLLS
SVQSFCQRTESLNFMKNTKPYQLLMDRLDSHLSGAIPALRVGQLNSHHFLSDLSVREKNL
RQMLEEPFNEASILEIIQSHSSHAGSQLGMSSGLQKRKYSMAFLESNSENSSSQDPSHLI
YSSKKPFLTEQSHRSSSVYSSEVLPQAPHTSGRLLDSAAHHMVGLGSSSSHHSGNLFPSS
HFPSGGASQQSMYESRKVLMCTLNNCCCSRAPASRAQPPYPGADTFPSQGFPPHAPLPAS
QPLQHFPVRGLMDASQTSRHPDFYGLYGQSSTKHYGTK
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggacaataaatactgtgcaccatcagtttggatctccaccaaagctatggatgcaagc
tggaaaaactgcttcgaggaggagcttctctgccctatatgtctgaatgtctttgatgag
ccaatccagttgccatgcaagcacaacttctgcaaaggttgcatctctgaggcctgggcc
aaggaaagcgcggcggtccgctgtcctgagtgcaaccacgactatgaccagaagccagcg
ctggagaagaactttaaactcgccaacatagttaagcggtttaacgctctgaatgcagag
aaagcccccgctgtgctgcactgtgtcctctgcagacgaggccccccgttgcccgtgagg
aaagtgtgcctgcgttgcaaggagccttgctgccagacccacgtccagacgcacctgcag
cagccgtgcccggcgccgggacacctgttagtagacatcgaagagctgagtgcctggacg
tgtcccactcatgaggaatacaggctgctccactgtgaggaagagcaggtggctctgtgc
cccttctgctacatctcccactgcacgaaccaaagacacacagtgtgcgatgtgaacaca
caacgcgtacaaatgcaggccatgctaatgaggcagcaagacagactggattgtcgtgtt
cagaacatcgatgagcagctcagcaagctggactcagataaaacccttctgaaggaggct
gtgtgcgagctgaaggagcgtgtccgagctcagtatcagaggatgtatgcgctgcttgag
gcaaaccaagcggagactgtgcagatgctggagaggacttacaccatgtatgtgaggaag
aactcgcagcaggtcctgcagctcaacgagaagcggcaggagtcagagaagctcctgagc
tcggttcagtccttctgtcaaagaacagagagtttaaacttcatgaagaacaccaaacct
taccagctgctgatggataggttagactcacatctaagtggggccatccctgccctgaga
gtaggccagctcaactctcatcattttttatctgacctctcggtgagagagaagaacctg
cgacaaatgctcgaagagccgtttaatgaggcgtccattcttgagatcatccagtctcac
agcagccatgctggttctcagctgggaatgagttcaggcctgcagaagaggaaatacagc
atggccttcctggagagtaactcagaaaactcctcttcccaggatccttcgcatttaatc
tacagcagcaaaaagcccttcctgacggagcaaagccaccgttcctcctctgtgtattcc
tccgaggtcctcccccaggctccccatacctccggtcgcctccttgactcggcggcgcat
cacatggtgggtctggggtcaagctctagccaccactcaggaaaccttttcccatcgtcc
cacttccccagtggaggagcgtcgcaacaatccatgtacgagagcaggaaagtgctgatg
tgcaccctgaataactgttgctgctccagagcaccggcttcccgcgcccagcctccgtac
ccgggggcggataccttcccctctcaggggttccccccgcacgccccacttcctgcgagt
cagcccttgcagcattttcccgtcaggggcctgatggatgcgtcgcaaacctccaggcac
cctgacttctacggcctgtacggccaatcttcaaccaagcattacgggaccaaataa
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