Xiphophorus couchianus (Monterrey platyfish): 114138395
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Entry
114138395 CDS
T05908
Symbol
pdlim1
Name
(RefSeq) PDZ and LIM domain protein 1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114138395 (pdlim1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xco04990
]
114138395 (pdlim1)
Domain-containing proteins not elsewhere classified [BR:
xco04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
114138395 (pdlim1)
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Ortholog
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GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
114138395
NCBI-ProteinID:
XP_027863417
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All DBs
Position
22:complement(23103208..23114661)
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AA seq
321 aa
AA seq
DB search
MPPVRVVLQGPGPWGFRLVGGKDFEQPLAISRVNPGSKAAQANLCIGDIILSINGDPTES
MTHLKAQNKIKGCVEEMALSIDRSETKLWSPLSSEEGKTHPYKMNLASEPREVKHIGSSH
NRSALPFAGFGPKVVTNQYNSPSGLYSSDNIKDFNSAVDEVKTVASEPNSKALSEPAAPG
KRPALPSDSEVYKMLQENQESDEPPRQSASFKVLQEILETGDSDKPSGFRSVKAPTTKIG
SSVGNTEKLPVCDKCGSGIVGMVVKLREKFRHPECYTCTACDVNLKQKGHFFVEEQIYCE
QHARERVTPPEGYDVVTVFPK
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctgtccgggtggtgctgcagggtcccggcccgtgggggttccggctcgtcggg
ggtaaggacttcgagcagccgctggctatttcccgggtcaaccctgggagcaaagcggcg
caggccaacttgtgcatcggagacataatcctgtcgatcaatggcgatccgacggagagc
atgactcacctgaaggcgcagaacaagataaagggctgcgtcgaggaaatggcgctctcc
atcgacaggtcagaaactaagctgtggtctccgctctcatctgaggaaggaaagacacac
ccttacaagatgaaccttgcgtcagaaccgcgggaggtgaaacacatcggctcgtcccac
aaccggagcgctctgccgtttgctggttttggcccaaaggtggtgactaaccagtacaac
agtccgtctggtctctactcgtctgacaacatcaaggactttaactccgccgtggacgag
gtgaagacggtggcgagcgagcccaacagcaaagcgctgtcagagccggcggcgccggga
aagcgaccagcattaccatcggactcggaggtctacaagatgctccaagaaaaccaggaa
tccgacgagccgccgcggcagtccgcttccttcaaggtgcttcaggagattctcgagaca
ggcgactcagacaaaccgtcaggcttcaggagcgtgaaggcgccaacgacaaagattgga
tcatctgttgggaacacggagaagttgcccgtctgcgataaatgtggttctgggattgtg
gggatggtggtgaagctgagggaaaagtttcgccaccctgagtgctacacctgcacagcc
tgcgacgtcaacctgaagcagaagggacatttcttcgtggaggagcagatttactgcgag
cagcacgctcgggagcgcgtcactccgccggagggctacgatgtcgtaaccgtcttcccc
aagtag
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