Xiphophorus couchianus (Monterrey platyfish): 114138494
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Entry
114138494 CDS
T05908
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
114138494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114138494
03041 Spliceosome [BR:
xco03041
]
114138494
03036 Chromosome and associated proteins [BR:
xco03036
]
114138494
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114138494
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114138494
mRNA cycle factors
Common to processing body (P body) and stress granule
114138494
Spliceosome [BR:
xco03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
114138494
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
114138494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-GeneID:
114138494
NCBI-ProteinID:
XP_027863602
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All DBs
Position
22:27425616..27440226
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AA seq
730 aa
AA seq
DB search
MSHVAVENAHGLEQQLAVLDLSAPDGQVGGRYVPPHLRNKDASKNVGNAFAAGRPGGYTI
APAPNYGWDAGRNNFVNGYHDNRMSGNSFNRGPPRMERGRGGVAGGGYRGNRGGAFNPIN
PAQPISFDASGWNTAKDAYSSFGNNRGKSAFFNDRGNASRGRFDHGGFGGGGGGNSRWVE
ESRDDGDWSKPLPRNERLEHELFAGSNTGINFEKYDDIPVEATGQNSPHHIESFQDVDMG
EIIMGNIALSRYTRPTPVQKYAIPIVKSKRDLMACAQTGSGKTAAFLLPILSQIYTDGPG
EALNAAKASGQENGKYGRRKQYPIALVLAPTRELALQIYDEARKFSYRSRVRPCVVYGGA
DIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRI
VEQDTMPHKGIRQTLMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEE
SDKRSFLLDLLSATVIPNEVQDNTGDNVEKPGKDSLTLVFVETKKGADALEDFLYREGYA
CTSIHGDRSQRDREEALNQFRSGKCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH
RIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQHKSSNRGR
SKRFSGGFGARDYRQTAAGGSAGGFGGRGGRNQQGHGGNRGFGGGGFGNFYTSDGYGGNY
SHSQVDWWGN
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatgcccacggtctagagcagcagctcgctgtcctagac
ttgagtgctccagatggacaagtcggagggcgatacgttcctccacatttacggaacaaa
gacgcatccaagaacgtgggaaatgcttttgctgctggacgaccgggcgggtacaccata
gcacctgcaccaaactacggttgggacgcagggcgcaacaactttgtcaacggctaccat
gacaaccgcatgagcggcaactcgttcaaccgtggcccgccacgcatggagcgtgggcga
ggcggtgttgcgggaggcggttaccgtggcaacaggggcggagcgttcaatcccattaac
cccgcgcaacccataagcttcgatgccagtggctggaacacggccaaagacgcctatagc
agctttggcaacaaccgaggaaagtctgcgttcttcaacgacagaggcaacgccagcaga
ggaaggttcgatcacggtggattcggtggtggcggaggaggaaacagccgctgggtggag
gagtccagggacgatggcgactggtccaagccgctgccacgtaacgaacggctggaacat
gagctgttcgccggcagcaacaccgggatcaactttgagaaatacgacgacattcccgtt
gaggctacaggacaaaacagccctcatcacatcgagagtttccaagatgtcgacatgggt
gagattatcatgggcaatattgctctgagccgctacaccagaccaactcctgtgcagaaa
tacgccattcctatcgtgaaatccaagagagacctcatggcctgcgcacagacgggatct
ggaaagacggctgcattcctgcttccaattctcagccagatctacacagatggaccagga
gaagctctgaatgcagccaaagcctcaggacaggaaaatgggaagtatggccggcgtaag
cagtaccccatcgccctggtactggccccaaccagagaactggcgctgcagatctacgac
gaagccaggaagttttcgtaccgctccagagtgcgtccctgtgtggtgtacggcggggca
gacattggccagcagattagagacctggagagaggctgccacctgctggtagcaactcct
ggcagactggtggacatgatggagagaggcaagattggactggactactgcaactacttg
gtgctagatgaggcagaccgcatgctggacatgggctttgaaccacagataagacgcatc
gtggagcaggacaccatgccgcacaaaggcatcagacaaaccttgatgttcagcgctacg
tttcctaaagagatccagatcctggcgagggattttctggaggattacatcttcctggca
gtgggcagagtgggttccacctcggagaacatcacacagaaggtggtgtgggttgaagag
agcgataagagatctttcctcttggatctgctcagtgctacagtcatccccaacgaagta
caggacaatactggagacaacgtagagaaacctggtaaggactctctgaccctcgtcttt
gtggagaccaagaaaggagccgacgccttggaagacttcctgtaccgggagggctacgcc
tgcaccagtatccatggcgaccgctcccagagagaccgcgaggaggcactgaaccagttc
agatcgggaaagtgccccatccttgtcgccacggcggttgcagctcgaggtctggatatc
tccaacgtgaaacatgttattaacttcgaccttccaagcgacatagaggagtacgtccat
cgcatcggacgtacggggcgagtcggaaacctggggctggccacgtcattcttcaacgac
aaaaacgggaacatcacaaaggacctgctggatatcctggtagaggctaaacaggaggtt
ccatcatggctggagagcctggcctatgaacaccagcacaagagtagcaacagggggcgc
tctaagaggttctctggtggtttcggagctcgggattaccgccagacggctgccgggggc
agcgccggagggttcgggggccggggaggacgcaaccagcagggacatggaggaaaccgt
ggcttcggaggaggtggttttggcaacttctacacaagcgacggctacggaggcaattac
tcccactctcaagtggattggtggggaaactag
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