Xiphophorus couchianus (Monterrey platyfish): 114139059
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Entry
114139059 CDS
T05908
Name
(RefSeq) protocadherin-20-like
KO
K16498
protocadherin delta 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
114139059
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xco01009
]
114139059
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xco04515
]
114139059
Protein phosphatases and associated proteins [BR:
xco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
114139059
Cell adhesion molecules [BR:
xco04515
]
Cadherins
Protocadherins
114139059
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Neur_chan_memb
Motif
Other DBs
NCBI-GeneID:
114139059
NCBI-ProteinID:
XP_027864491
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Position
23:complement(19638028..19642858)
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AA seq
859 aa
AA seq
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MGHGTPDNMNWAGLLQKLLMMLHTKQIICGSIHFSIKEELEPHTLVGSLNKHFAPPYQLL
TEEYLWMNKSTGNFYITEKKMDREHLCSEETKDDECIILQSVIVGPSRELEQFSVIIEDI
NDNAPYFENSKICLDISEDVPAGTSLMLDDQARDRDSGPNEQLKYELKGSGGVFSLKVEE
EGPLIKLIVQKALDRETQDLYQMQLVATDCGVQPLSVSVPIFVTVTDVNDNCPSFSPNSP
LSATISGDSKKDTVVTQVVAADPDLGPNAAIVYSLSPKVSERAKKLLILSSHSGHIRLTQ
DLEIDSSEELVLKVLASGLHCPPAETQVTVSLLPKATQGLTIKIGFIAKHYNQTVVIPES
QPPTPLAVLELEGDSSFKDSSLAIEGDVPFFLSPQSGKYLLSTSKPLDYEMKSEYHISVV
VKGSSSERSVIAPPQREIRVMVEDVNDNAPHFSQTDYQLEVEENNEPAVILLQVSATDAD
SGLNGRVTYRLDKHTSAIFKVDSVTGQLSALVPLDREQKSVHKLTVFARDSGVPPLESQA
SVIIRVLDRNDNAPAFSTPHFIFFIPENAPPFAQVGLIEVEDPDEGENGKIELQIVQGNT
SFVVDSIQRMLHTTTNLDREMTDRHELYLAVSDNGRPVALTSSARVTIFIEDINDNNPKV
ILPSSNYSCLVVSPGTPVGTNVTKVYAIDEDSGVNSEITYSVVAPKSVWQNTPFQVDSKS
GNITLRQELLQENMGMHNLFIVVRDNGKPTPLYTTVWINLLVNKSTDQCHLDRAPTWTGR
SDWVESASMSPICEVETARSVQAIYFYLVLCMAVVTIVLFFTTVCLYLKHRKYPPKKKMG
HTEENEIPLRIKDKYYSDE
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgggccatgggactcctgataatatgaactgggctggacttctgcagaagttgctgatg
atgcttcataccaagcagatcatttgtggctccatccatttctctatcaaggaggaactg
gagcctcatactctggttggatcactaaataaacactttgcacctccttaccagctcctg
accgaggagtacctgtggatgaacaaaagcactgggaatttctacattactgagaagaag
atggatcgtgagcacctctgctctgaggagacaaaagacgatgaatgcattattttgcaa
tctgtaattgttgggccctctagggagctggagcagttttctgtgatcatagaggacatc
aatgacaatgcaccatattttgaaaacagcaaaatatgcctggatatttctgaggatgta
cctgcagggaccagtctcatgctggatgaccaggctcgggacagagatagtggaccaaac
gaacagctgaaatacgaactcaaaggttctggaggagttttttctttaaaggttgaagaa
gaaggaccactaatcaagctcatcgtacaaaaggctctggacagagagactcaggacctg
tatcaaatgcagctggtggctactgactgtggagtacagcctctgagtgtatcagtacct
atatttgtcacagtgacagatgttaatgacaactgtccaagctttagtcctaacagccca
ctcagtgccacaatctcaggagactctaagaaggatacagttgttactcaggtagttgct
gcagacccagatttaggcccaaatgctgctattgtttattccctcagtcctaaggtctct
gaaagggctaagaaactcttaatcctcagcagtcacagtggtcacatcaggctaacacaa
gaccttgaaatagacagctctgaggagctggtgttaaaagtgttagccagcggccttcac
tgcccaccagcagagactcaggtaacagtatccctactccccaaggctacccaaggtcta
acaatcaagatcgggttcatagctaagcattacaaccagactgttgtgataccagagagc
caaccccccactcccttagctgttttagagcttgagggtgacagcagctttaaagactca
tctcttgccattgagggtgacgtgcctttctttttgagcccacagagtggcaaatatcta
ctttccacatcaaagcccctagactatgagatgaaaagtgaatatcacatttctgtggta
gtgaaagggagttcatctgaaaggtctgtgatcgctccgcctcagcgagagatcagggtg
atggtggaggatgtcaatgataatgccccacatttctcccagactgactaccagctggaa
gtggaggaaaacaacgagcctgcagtaatactgctgcaggtatcagctactgatgcagac
agtggactcaacggcagggtgacatacaggttagataaacacacatctgccatctttaaa
gttgactcagtgacaggtcaactatctgcattggttcctctggatagagaacagaaaagt
gtgcacaaactcactgtgtttgctcgagatagtggggttcctcccctggagtcccaggcc
tctgtaattattcgtgttctggaccggaatgacaatgcacctgctttctctactcctcac
ttcatctttttcatccctgagaatgcaccaccttttgctcaggtggggttgatagaagtg
gaagatccagatgaaggagagaatgggaaaatagaattgcaaattgtacagggtaacaca
tcttttgttgtggatagcatacaaaggatgctgcataccaccaccaacttggaccgggag
atgacagatcgtcatgaactttacctggcggtcagcgacaatggccgtccagtggcatta
acctccagtgccagggtgactatctttatagaggacattaatgacaacaacccaaaagtg
atccttcccagcagcaattattcatgtttggtagtctctccaggtactccagtgggtaca
aatgtaacaaaggtctatgccatcgatgaagactctggtgtaaactcagaaatcacatat
tctgttgttgcaccaaagtcagtttggcaaaacacccccttccaggtagactcaaaatca
gggaacattaccttaagacaagagcttttgcaggaaaatatgggaatgcataatctgttc
attgtagtaagagacaatgggaaaccaactccactttacaccacagtttggattaacctg
ttggttaataagagcacagatcagtgccatctagatagggcacctacatggactgggaga
tcagattgggttgaaagtgcttctatgtctccaatctgtgaggtggagactgccagatca
gttcaagcgatatacttttatcttgtgctctgcatggcggtagtaaccatagttttgttt
tttacaacagtttgtttgtacctgaaacatagaaaatatccaccaaagaaaaagatggga
catacagaagagaatgagattccactccgaatcaaagacaaatattattctgatgaatag
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