Xiphophorus couchianus (Monterrey platyfish): 114139209
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Entry
114139209 CDS
T05908
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 2-like isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114139209
Membrane trafficking [BR:
xco04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
114139209
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_8
TPR_2
SH3_2
TPR_1
TPR_MalT
SH3_1
SH3_9
SNAP
TPR_NPHP3
DIX
HEAT_Nup120
DUF6377
TPR_5
Motif
Other DBs
NCBI-GeneID:
114139209
NCBI-ProteinID:
XP_027864784
LinkDB
All DBs
Position
23:complement(22169772..22189631)
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AA seq
1592 aa
AA seq
DB search
MALISGSCRLLGQMASCCCRPFLNSSCCRPLIKVCLSSFTDVSPAELDALWREPPYSLGG
TNEHFSDNNIMTQGEEEDGPTGDSGEGAEHDSYWKKKEAFLRGSKISVGEKFSSEIVLRF
TGRRRSGVNPDQYLQEALRTRLRVVESNSKDITQLFKDLSARLVSVHAEKDIFVLTFKTV
EEIWKFSTYLSLGFVARCLENFLCDQSFWLDAELLRELEINVTVDEEHLATLYLELLLQE
GSFFAKALFTRSEEDEDSEEQLAFKKNDLLIVRDTGKDDIWEGTMLATGNHGQVPVHAMQ
PLPYPFYQWFLRKYPGQAGYSPVEKELFESAIVTGSCEAIVDYSPAGPDELQLSQGDTVE
IQGLLIRGISIFIGRHTSTGHAGFVHRAHVKPLNTKPLDRQLVFLTEEEKASLAQVNPYS
SEPSESCLLERLFSSDISSVYRLDRLNEADFMYIRNRPKHDFKGFSSARQSLMSERSEGR
QNQSSPRASVSVASPRMSLYHSLNPLPREGERLSFNLEDTFKELDEFQEDPPLFMEENSW
EGEKTELSDPTLTLLNHEHFQDEFLPLYDLHCSFLWMTFGEKTEDELSGHLESVRECAKR
LGMHWAHRRACFVLGRLCARKLKFSQARVYYEEALSVSVNSFSDVPLLVALSTNLTAIYL
KQRMTDKLPQILEKASALILCLPCHAFMSSDEVELLKLLLRRSVVLGDKHLEARVCYLIS
SLYLVLKKTEDTLPFFERLQFLSATLSTTEGGPIEPLDLNWLLSWLYHRKYMPYLALASL
SLDSREDHSLCDAFQRIELFIRNSVRLNPCWKEGTSLLPAQIVVYLQQALAVAEQGDDIK
MQRDLCLGLALTYQQYGALDKAVRCAQQAVETGSHINEEDGFEASVLLGWLLVLTGQAER
AQSILEPLLTSLQSTDSPTQQGVIHNLLALCLRHRGRVREAGWHLHSALEISRESGNQRN
QALALANLGCLALDAGANLLAERFLVRSLCLFLDLWESPTDEEHVQVYLWLGQSYKDRGK
SQDIRACYEMGLLIALHARNLHSQMVVAKLLSVLYAEMLLYRQSIVYYEHCVSVSRELKD
KRREGEYLEKLSSLYLSLNTEKSSRKSLDYTKQSLRISIDLGKREEESETWLQVGRIYYL
IQEDELADMYLQAAVKTALKMNDPHFALSIYEEAGDVYFKGHRNRMASEIFYRDGSLPFA
RSIKDVHSEFRLLSKLTELLMNQGEQEEALQYATLAVQIANQTGVRENERTAYHRLATIY
YNLQQYEMAEYNYLKSLSLCPPILQHPTEARYYTKVYCRLGNITLHDFKDAFDAVGYFYL
ALAAALEDKANPEALYVVYMKLAEIHGSHMPDAQLCQLYIDRAQSLKRVLAGVESIPDSD
SNLKRENLSNVYTGYRKSANDTHSSFDFVPGDERFVDSTAARAHSVKTDSGEILTDMNLE
GDYGQKDHSHCPGDTDSRYLDVSGSETDTIASQSYSDSVITGSFDTAKEHISDSSSTTDT
YQNPTEGKDSELDSDHSMPSQIPANPTGDLTRHTDARDTDSDVPDEQSTPSKETDALSDP
TQTDCDAGWKGTATMNNGKAASKDNAWRHGGI
NT seq
4779 nt
NT seq
+upstream
nt +downstream
nt
atggcattgatctctgggagctgccggctcctgggccagatggcgtcttgttgctgcaga
ccgttcctcaactcgtcctgttgtcgcccgctcatcaaagtctgcctctcctccttcaca
gacgtctcccctgctgagctggatgctctttggagggaaccgccatacagtctcggaggg
acaaatgaacacttctcagacaataacatcatgactcaaggtgaggaagaggatggtcct
actggcgactcaggagaaggagcagaacatgacagctactggaagaagaaagaggccttc
cttcgaggaagtaaaatttcagtcggggagaaattctcttcagaaatcgtgctccggttt
actgggcggaggcgttccggtgttaatccagaccagtacctgcaggaggcgctgcgcaca
cgactccgagtggtggagagcaacagcaaagacatcactcagctctttaaagacctgtcg
gctcgtctggtctctgttcatgctgagaaggacatctttgtgctcacatttaagacggtg
gaggagatctggaagttttcaacttacctgtcattaggttttgttgcccgatgcttggag
aacttcttgtgtgaccagtctttctggctggacgcggagctgcttcgtgagttagagatc
aatgtcactgtggacgaggagcatctcgccaccctctacttagagcttctgcttcaagaa
ggatctttttttgccaaggcgctgttcaccagaagtgaggaggatgaagacagtgaggag
cagctggcatttaaaaagaatgacctgctgatagtgagggatacggggaaggacgacatt
tgggagggcactatgctcgccacggggaaccacggccaggtgccagtccacgccatgcag
ccactgccctaccccttctaccagtggttcctcaggaagtatccgggccaagctggatac
tcaccagtagaaaaggaactgtttgaaagtgcaattgtgaccggttcgtgtgaagccatc
gttgactacagtcccgctgggcctgatgagctccagctgagtcaaggggacacggtggag
atccagggtctgctgatacggggcatttccatcttcataggaagacacacatccacagga
cacgctggatttgttcacagggcccacgtcaagcctctaaacaccaaacccctagacaga
caattggtctttctcacagaggaggagaaggccagcctggctcaggttaacccgtatagc
tcagagccaagcgaaagctgccttctggaaagactcttctcatcagacatcagctctgtg
tacagactagacaggctgaacgaggccgacttcatgtacatacggaatcggccaaagcat
gatttcaagggtttttccagcgcccgtcagagccttatgtccgaaagaagcgaaggaagg
cagaaccaatcctccccccgcgcctctgtctctgtcgcctcaccacgcatgtccctctat
cattccctcaatcctctgccacgagagggagagcggctctctttcaatctggaggacaca
tttaaagaactagatgagtttcaggaggatccccctctcttcatggaagagaatagctgg
gagggggagaagacggagctcagtgacccaacactgactctgttaaaccacgaacacttc
caggatgaatttctgcccttgtacgacctacactgttccttcctgtggatgactttcggt
gagaagactgaggatgaactgtccggacatcttgagagtgtcagggagtgcgccaagaga
ctgggcatgcactgggcacatcggcgtgcgtgctttgtccttggcagactttgcgccaga
aaactaaagttctcccaggcacgagtatactacgaggaagctctgagtgtcagcgtcaac
agcttctctgatgtaccgcttctcgtggctctctccacaaatctcactgccatctacctg
aagcagcgtatgactgataaactgccccagatcctggagaaggccagtgccttaatactc
tgtcttccctgccatgctttcatgtcctcagatgaagttgaactgctgaagctcctcctg
agaagatccgtcgtgttgggggacaaacatttggaggctcgcgtctgctacctcatctct
agcctctacttagttcttaagaagacagaagacacgctacctttctttgagcgacttcag
tttctttcagcaacactatcgaccaccgaaggcggacctatcgaacctttggacctcaac
tggctcttgagctggctctatcatcgtaaatacatgccttacttagcactggcctcccta
agcctggactcaagagaagaccattcactttgtgatgctttccagaggattgagttgttt
atcaggaactctgtccgtctgaatccgtgctggaaggaaggaacctcactactccccgct
cagatagtggtttacctgcagcaggctcttgccgtagctgagcagggtgatgacataaag
atgcagcgggacctttgtttgggtttggctttgacctaccagcagtacggtgcgctggat
aaagcagtacgctgcgcacaacaagctgtggagacaggaagccatatcaatgaggaggat
ggctttgaggcttcagtgctacttggttggctgctggtgttgacgggtcaggctgagagg
gctcagagtattttagagccactgctcacatcactacagagcacggacagtcccactcag
caaggagtcatccataaccttttagcattgtgtctgaggcatcggggtcgggtccgagag
gcaggttggcatcttcactctgccttggaaatctccagagagagtggcaaccaaaggaat
caggcgctggcactagctaacctgggctgcctggcgctggatgctggggcaaacctcctt
gcggagcgctttctagttaggtctctgtgtctttttctggatctctgggagagcccaacc
gatgaggaacacgttcaggtgtatctttggcttgggcagagttacaaggacagagggaag
agtcaggacatcagggcatgctatgaaatggggctgctaattgcactgcatgccagaaat
ttgcacagtcagatggtggtcgccaagcttctgagtgtgctgtacgccgaaatgctgctc
taccgtcagagcattgtttactatgagcattgtgtctcagtgtccagagagctaaaggac
aagagacgggaaggagagtatctggaaaaactcagcagcctctacctctcactcaacaca
gaaaaatcgtctcgtaagtctcttgattacaccaagcagagtctgaggatttctatcgat
ctgggcaagagagaggaagagtcagagacctggctgcaggtgggacgaatctattacctc
atccaggaggacgagctggctgacatgtacctgcaggcagcagtgaagacagccctgaag
atgaacgaccctcattttgctttgagcatctacgaggaggcgggagatgtttactttaaa
ggccacaggaaccgaatggcttcagagattttctacagagacggtagtctaccatttgca
cggagcatcaaagacgtccattcagagttccgcttgttaagtaaattaacagagctacta
atgaatcaaggagagcaggaggaagctctgcagtatgcaacactggctgttcaaatagcg
aaccaaacaggagttcgtgaaaatgagaggactgcgtatcatcgattggccacaatttac
tacaatcttcagcagtacgagatggcagaatacaattacttgaagtccctttccctctgt
ccacctatactgcagcaccccacagaggcgcgctattacactaaagtctactgcaggcta
ggaaacattacactacatgatttcaaggatgcttttgatgcagtggggtacttctattta
gcactggcagccgctcttgaggacaaagctaaccctgaagctctgtatgtggtgtacatg
aagctggcggagatccatggaagccacatgcctgatgctcagttgtgccagctgtacata
gacagagctcagagtctgaagagagtcctggccggagttgaaagcatcccagacagtgat
tccaacctaaaaagggagaatttatcgaatgtctatactggatatagaaaaagtgcgaat
gacacgcactcttcctttgattttgtacctggagacgaaaggtttgtagatagtacagcg
gcaagagctcattcggtcaagactgactctggggaaatattgacggacatgaatcttgag
ggagattatggtcagaaggatcacagtcactgtcctggtgacacagacagtcgctattta
gatgtttcaggctctgagacagacaccattgcgagtcagtcatatagcgacagcgtcata
acaggatcctttgacacggctaaggagcacatttcagactccagcagcaccactgacact
taccagaatccgactgaagggaaggattcagaattggattctgaccacagcatgcctagt
caaatacctgcaaatcctacaggtgatctcaccagacacacagacgccagagacacggat
tcagatgttccagatgaacaaagcaccccgagtaaagaaacggatgctctcagcgatccg
actcagacagactgtgacgctggatggaagggtactgccaccatgaacaatggtaaagct
gcaagtaaggataatgcttggagacacggaggaatataa
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integrated database retrieval system
