Xiphophorus couchianus (Monterrey platyfish): 114139240
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Entry
114139240 CDS
T05908
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04120
Ubiquitin mediated proteolysis
xco04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
114139240 (syvn1)
04120 Ubiquitin mediated proteolysis
114139240 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114139240 (syvn1)
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114139240 (syvn1)
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
114139240 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
zf-HC5HC2H
zf-Nse
FANCL_C
Motif
Other DBs
NCBI-GeneID:
114139240
NCBI-ProteinID:
XP_027864843
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All DBs
Position
23:25860537..25871333
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AA seq
635 aa
AA seq
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MVRAALVTATSMALTGAVVAHAYLLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKI
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWVFHLRVLSLLGLLAVMDFLFVNHACHSIITRGASVQLVFGFEYAI
LLTMILTTFIKYVLHTVDLQSENPWDNKAVYMLYTELFTGFIKVLLYIAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASNNNQAQAPAPPPAPAPAAPANAP
AAPAPNVAPGMLPGFPPGVFPFWGPFPAVPPPAAAAPPAAPAAADAPPSSTDTTQAAGTS
QPTSAAADAATSSAAAAAPGSAIPGFPFSFPPPPFPAAPWLPMPPPPPFVSSMPPPPPSL
SRLTEEELRELEAEGRRGLEARLQCLQNIHTLLDAAMLNIHHYLSTVATLAPPRPEGGAA
EAGRANREAASAGAESPATERDSSTSDPVGGATVSSQPADSTSSALDAERKENWDEGAAD
DENGEPSAAELRRRRLRKLETSPSSPTSPLPPPDN
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgagcagccctggtgaccgccaccagcatggcgctgaccggcgccgtggtggcc
cacgcctacctgctcaaacatcagttctacccgaccgtcgtgtacctcaccaaaagcagc
cccagcatggcggttttgtacattcaggcgtttgtgctggtgttcctgctggggaagatc
atgaggaaggtgttctttggccagctgagggctgcagaaatggagcacctcatcgagcgc
tcctggtacgcggtgacggagacctgcctggcgttcaccgtgttcagggacgatttctcc
cctcgcttcgtcgccctcttcaccctcctgctcttcctcaagtgtttccactggctggcc
gaggaccgggtggactttatggagaggagtccgaacatatcctgggtttttcacttgaga
gttttatctcttctaggacttctggctgtcatggacttcctgtttgttaaccatgcctgc
cacagcatcatcaccagaggagcttcggtccagctcgtttttggctttgagtacgccatc
ttgttgaccatgatcctgacgaccttcatcaagtacgtcctgcacaccgttgaccttcag
agtgagaacccctgggacaacaaggccgtctacatgctctacaccgagctcttcacaggt
ttcatcaaggttctcctctacatcgccttcatgaccatcatgataaaggtccacaccttc
cccctgttcgccatccgacccatgtacctggccatgaggcagtttaaaaaagccgtaacc
gacgctataatgtcaaggagagcaatccgcaacatgaacactctatatcctgatgcgact
ccggaggatctgcaggcctcggacaacgtctgcatcatctgtagagaggaaatggtcacc
ggagccaagaagctaccctgcaatcacattttccactccagctgcctgcgctcctggttc
cagaggcagcagacctgccccacctgccgcatggacgtcctcagggcatccaacaacaac
caggcccaggcccctgccccgcccccggctccagccccggcggcgcccgccaacgccccg
gccgctccggccccaaacgtcgctcccggcatgctgccaggcttccctccaggagttttc
cctttctggggtcctttccctgcagttcctccacctgctgctgctgctccacctgcagct
cctgctgcagctgacgctccgccaagcagcacggacacaacgcaggccgctggcaccagc
cagcccacttcagctgctgcagacgctgctacgtcgtccgctgccgccgccgctccagga
tcagcaatcccaggattccctttctccttcccgcctcctcctttccccgctgcgccatgg
ctgccgatgcctccgcctcctcccttcgtgtcgtccatgcctcctccgcctccgtcgctc
tctcgcctgacggaggaggaactgagggagctggaggccgaagggaggaggggcctggag
gccaggctgcagtgtctccagaacatccacaccctgctggacgccgccatgctcaacatc
caccactacctcagcaccgttgccacgctcgcccctcctcggcctgagggtggcgccgca
gaagctggcagagccaatcgggaggcagcgtccgctggcgcagaaagtcccgccacggag
agggactcgtccacctctgatccagtaggtggagccacagtctcctctcagcccgctgac
tccacctcctctgccttggacgcagagaggaaggagaactgggacgaaggagcggcggac
gacgagaacggagagcccagcgccgccgagctgaggcgccgccgtctccgtaagctagag
acgtcaccttcgtcaccgacttcgccgttgccacctcccgataactga
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