Xiphophorus couchianus (Monterrey platyfish): 114139260
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Entry
114139260 CDS
T05908
Name
(RefSeq) protocadherin-1-like isoform X1
KO
K16498
protocadherin delta 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
114139260
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xco01009
]
114139260
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xco04515
]
114139260
Protein phosphatases and associated proteins [BR:
xco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
114139260
Cell adhesion molecules [BR:
xco04515
]
Cadherins
Protocadherins
114139260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Syndecan
TMEM154
Motif
Other DBs
NCBI-GeneID:
114139260
NCBI-ProteinID:
XP_027864873
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All DBs
Position
23:complement(12373891..12572168)
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AA seq
1217 aa
AA seq
DB search
MLSGRDMVILRWELLSLLAVILMVSCNAVPTDILYRVNEEQPPNTLIGSLAADQGLPDTG
HLYKLEVGTPFLRVDGKTGDIYTTEIPIDRETLRDCQSQFDDKCYLEFEVSITDMVKGIG
SGPRLIEGRIEVLDMNDNTPQFSSPILSLAIPENTHIGALFSIPMATDKDSGSNGVAEYS
LSSGPDADQLFSLQVALDTDEKQPQLVVMGNLDREKKDSYDLNIRVVDGGDPPRASSALL
RVTVTDQNDNAPKFERNHYEAELPENSPLGHSVLQVRANDADTGANGEIDYILHQASETV
QRLLRIDRSTGIIYVKGLVDREETNFLKFFVVARDRGPNSKSSKVLVTIIVKDQNDNAPA
IEIRGIGLVTHQDSVANISEDMPIGTPVALVQVSDRDEGENAVVTCVVAGDVPFQLRPAS
ESANDRKRKYFLQTTTLLDYERIKDYRIEIVAVDSGNPALSSTNSLKVQVTDVNDNTPTF
SPALLEVFFPEGNQPGDRVLDILATDADSGINAEMIYSIIESSANRLFEVDANTGEVRVK
NTLDREEVERYEFHIAAADKGLPSKTGTATVVINVLDRNDNEPKFMLNGYSFSVIENMLP
LNPVGVVTVTDADKGENSRVTLFVEPDNGKFVIQNGTGTILSSISFDREKESTYTFRLKA
VDGGEPPRSSYVGVTINVLDENDNAPYVTKPSNSSYTYLTPVTPPETRVEVVEAEDIDAG
LNAELYYSITGGNPYGLFQISSTSGEITLAQAFSGKHNGLHRLVVKVSDQGKPARYTTAL
VHVFVNETKSNVSLIEALVGHSLYTPLDRDIAGDPNYAYSQQTNILYAVLAGVAVVILVI
VAVVVIRHHLQKDTKSGYQAGKKESKDLYAPKQGPKNGKGKKSKKPRAPKPTKPLEEDEE
ASLQKGLKFNLINDVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKH
QAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKANPPKYNNKQLPHRRVTFSTSNQAQDLQ
DASQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRPL
PDVAMTGNCTRECTEFGHSDSCWMPGQSSPNRKVSKNAPKLSTFVPYQEMDGQEHLMANG
SPKPMVTEERGTGGGAGGSSSKVASMRFMTPYSSAYPGSGDSSGKDCGLEEIPLSQAAEY
HSATTPTGQTSKREIYL
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttgtccggcagagacatggtgatcctgaggtgggagctactgtccctcttggccgtc
atcctgatggtctcctgcaatgctgtgcctacagatattctgtatcgggttaatgaggaa
cagccacccaacacgttgattggcagcctggcggcagaccaaggccttccagacactgga
catctgtacaagctggaggtgggcacccctttcctgagggtggacggcaaaactggggac
atctacaccacagagattcctattgaccgtgagacactgagagactgccaaagccagttt
gatgacaaatgctacctggaatttgaagtgtccatcacagacatggtgaaagggattggc
tcagggccacggctgatcgaaggtcgcattgaagtgctggatatgaatgacaacacgccg
cagttctcttcacccatcctctccctagcaattccagaaaatacacacattggtgcactc
ttctccatcccaatggccacagacaaggactctggttccaacggcgtggctgagtactct
ctgagttccggaccggatgctgatcaactcttcagcctgcaggtcgctttggacacggac
gagaaacagccacagctggttgtcatgggtaacctggatcgtgagaagaaagactcgtat
gatctgaatattcgggttgtagatggaggtgatccaccaagggcgagcagcgctttactg
cgagtcactgtgaccgatcagaatgacaatgcgccaaagtttgagagaaatcactacgag
gccgaacttccagagaacagcccactgggacactccgttttgcaggttcgagccaatgac
gcagacactggtgccaatggagagatagattacatcttacatcaagcatccgagactgtc
cagaggcttctgcgcattgaccgttccactggcatcatttacgtcaaaggcctggtagac
agagaagaaactaattttctcaagttctttgtggttgccagagaccgtgggcctaattcc
aagagttccaaagtcctagtgaccatcattgtcaaggaccaaaatgacaacgcaccagca
atagagattcgtggtattgggttggtcactcaccaggacagtgtggcaaacatctctgag
gacatgccgattggtaccccagtagcactagtccaagtgtctgaccgtgacgagggagaa
aacgctgtggtgacatgtgtggttgcaggtgacgtcccttttcaactccgacctgctagc
gagtcagccaatgatcgaaagagaaaatacttcctgcagacaactactctgctggactat
gaacgtattaaagattaccgaattgaaatagttgctgtggattccggtaacccagctctg
tcaagcaccaattctcttaaggtccaggtcacagacgtgaatgataacacaccaacattt
tctccagctttgcttgaagtgttctttcctgagggcaaccagccaggtgacagagtgcta
gatattttggccacagatgcagatagtggtataaatgcagagatgatttatagcatcatt
gagtcctctgctaacaggctttttgaggtcgatgccaacacgggagaggttcgtgtgaaa
aacacactggatcgagaggaagttgagcgctatgagttccatatcgctgcagccgacaaa
ggccttccgagtaaaactggaactgctacagtggttataaatgttctagaccgcaatgac
aatgaacccaaattcatgttaaacggatacagtttttctgtaattgaaaacatgctccca
ctaaatcctgttggtgtagtgactgtgactgatgctgataagggggagaactcaagagtg
acactgtttgtagaaccagataacggcaagtttgtgattcaaaatggaacgggaacgatc
ctgtcgagcatttcttttgaccgtgaaaaggaaagcacctacacctttcgtctgaaggct
gtggatggtggtgaaccacctcggtcttcctacgttggtgtgaccatcaatgtcctggat
gagaatgataatgccccctatgtcaccaaaccatccaactcctcctacacttatctgaca
cctgtcacacctccagaaacaagagtggaagttgttgaggctgaggacattgatgccggg
ctcaatgcagagctgtattattcaatcactggaggaaacccttatggcctttttcaaatc
tcatccaccagtggggaaatcacactggcacaagcattctctggcaagcacaatgggctt
caccgacttgtcgtgaaggtcagtgatcaaggcaaacctgctcgatacaccacagcctta
gttcacgtgtttgtaaatgaaaccaaatctaatgtgtccctcattgaggcacttgtgggt
cacagtctttacacacctctggacagagacatagcaggagaccctaactatgcctacagt
cagcaaaccaacattttatatgctgtccttgcaggtgttgctgttgttattttggtcatt
gtagctgtggtggtcatcagacaccatctgcagaaagatactaaaagcggttaccaagct
ggcaaaaaggagagcaaagatctttatgctcccaagcagggacccaaaaatggcaaagga
aaaaagagcaaaaaacccagagctccaaaacccaccaaaccactggaagaggatgaggag
gcgagtttgcagaaaggtctgaagttcaaccttattaatgacgttaatgacagtcccaga
atccatctgccccttaactatccaccaggaagccccgacctgggccgtcactataggtcc
aactctcctttgccatctatccagctgcaaccacagtcaccctctgcctccaagaaacac
caggctgttcaggacctccctgcaaccaacaccttcgtagggacgggcgacaacaactcc
acgggctcggatcaatattcggattacagctacaaggccaacccacccaaatacaacaac
aaacagctgccccaccgccgagtaaccttctccacctccaaccaggcccaggatctgcag
gatgcatcccagcacagctactacgacagtggcctggaggagtcagagaccccaagctcc
aagtcatcatcgggccccaggatcggaccactagctctgccagaagaccactacgagagg
accacacctgatggcagcatcggcgagatggaacacccggagaacgacctcaggcccctt
ccagacgtggcaatgaccggtaactgcacccgtgagtgcaccgagtttggccactctgac
tcctgctggatgcctggccagtcttcccccaaccgtaaggtctccaagaacgcccccaag
ctctccaccttcgtgccttaccaggaaatggacggacaggagcacctgatggccaacggc
agcccgaagcccatggtgacggaggaacgtgggacgggtggtggcgctggtggcagcagc
tccaaagtggccagcatgaggttcatgaccccatacagcagtgcctaccctgggagcgga
gactcatctggcaaagactgtggcctcgaggagatcccactgagccaggcagcggagtac
cactctgccaccacccccactggccagacctccaagagagagatctacctgtga
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