Xiphophorus couchianus (Monterrey platyfish): 114139261
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Entry
114139261 CDS
T05908
Symbol
pcdh12
Name
(RefSeq) protocadherin-12 isoform X1
KO
K16499
protocadherin delta 2
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xco04515
]
114139261 (pcdh12)
Cell adhesion molecules [BR:
xco04515
]
Cadherins
Protocadherins
114139261 (pcdh12)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
DUF5527
Motif
Other DBs
NCBI-GeneID:
114139261
NCBI-ProteinID:
XP_027864878
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Position
23:complement(12936690..12953459)
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AA seq
1172 aa
AA seq
DB search
MLLALLLVLSFSSGTLCSESSSIIIHYRVWEEQPSGTRVGRLLDDLRQRDEVGPLEDFQV
VEQVKALPFSVTARDGVIATQGRLDREALCRISDLCEVAFSVLYRKRGSVNCLRICVEVM
DLNDHSPSFPNTTQEVEISETAPLRMRIPLDRAVDLDAGPNGLQTYSLSVNQHFALDVTD
GSGGSKQAELVVIKELDREVQDSFDLILVAYDKGSPPKSGSMSVHVVIQDSNDNSPAFEE
SSPTVTLSENTPTGTTIFKLTATDPDLGANGEVKYWFSKHTPAEFQKLFHVDSQTGEVIV
KAPLDYEREPSFVLNIQAIDHGPNSMPTHCKLHIKLVDVNDHAPRISTKWLSPTSAVPTV
REGAPIDTFLVLVTVYDADSGKNGEVSLTIQEGSGPFRLKSSDNFNYLIVTNGSLDREKV
NNYNIKLIAQDHGSPSLVTIENLPVSVLDENDNAPAFLKSIYTTSIKENNFEEDAVLEVK
ASDDDQGLNGKVSYKIKKLSDQKSFSIHPTTGIIRVLRSLDHEESQSYSFIVESVDYGHP
PLTGSTTVQINVEDLNDNAPVIKEPKPRNGVVSVSIPVNAHKGEIVTELGNDTEEKPTSL
PISHSVLDGFNGFPASTIKAEDPDSGLNGQLKYIISNGNTNGLFWMDEDTGQLFINATNA
TELIGRTFKMELSVADMGTPSYKTEATLEVTFINLQDHLKNSSPGNRGQLSFTMMMAICL
GATCLLLLLAIALVTTFCRPEKRDNHAYNCRQAESSYTRHPRRPQKNIRKSDIQLIPVIR
GHKEEPSEEDSEVQPLTPAPLPEDQQTEREYNFIPSVINNNFHSQSYPEVDSPQHVGHHC
KTLRKPGNIELDGSLTLTPATSYQTLCKTRNPSSSSSSLSHFSTLKRNKLHPESEESRSQ
RSTSQATLRRPKMSDGQQDAEHQQMLRNLVRLSMAAFGDTIELSSASPEVQQISQLLSLL
RQGQLQPRTNFRGNKYSHRNGRYGGHDCSDWQSTKDSGHGESEAGDVDWEAGRDSPIDPQ
LEEGLNNLLNSPDDVFSEISDPAWMARLSLPLTADYHDNVFVPNGPPSPESELPPRDGLN
STSSFSTFGKTPEKDDHLGGALLSEVSTLFEMLMTQKADAHPGPRPDVLYRLSAAYRRSL
GLDVTATAGGSAQKNCSEKRPAMAVASKHQYQ
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgctgctggctctgcttctggttctgagcttttcctctgggactctctgctctgagtca
tcttcaataattatccattaccgggtttgggaggagcagccgtcgggaactcgggtcggc
cgtctgttggacgacctccgtcagagggatgaagtcggccctctggaggatttccaggtg
gtggagcaggtaaaggcccttcctttctctgtcacggctcgagatggggtcatcgccacc
caaggtcgactggacagggaggcgctgtgccggatatcagacctttgcgaggtggccttc
agtgttctctacagaaaaagaggctctgtgaactgcctcaggatctgtgttgaagtgatg
gacctaaacgaccatagtcccagcttccccaacaccacacaggaggtggagatctcagag
actgccccccttcgtatgcgaatccctttagatcgagctgttgatctcgatgcagggccc
aacggcctccagacctattccctatcagtcaatcagcactttgctttggatgtgacagat
ggttcaggtgggtcaaaacaagcagagctggtggttatcaaagaattagacagggaggtt
caggactcttttgacctgatcctggtagcgtacgataaagggagcccaccaaagtccggg
agcatgtctgtccatgttgtgattcaggactcaaatgacaacagcccggcttttgaggag
agcagtccaactgtgactctaagtgagaatacacccactgggacaaccatcttcaagctt
acagcaactgacccagacctaggtgccaatggtgaggtgaagtactggttcagtaaacac
acaccagcagagtttcaaaaacttttccatgtggattcacagactggagaggtgattgta
aaggctcctctggactatgagagggagccatcctttgtgctcaacatacaggccattgat
catggtcccaatagcatgccaactcactgcaagctacatatcaagcttgtagatgtaaat
gatcacgcaccaagaattagcacaaaatggctttcacccacctcagctgtccccactgtc
agggaaggagctccgattgatacgtttcttgtactggtgacagtttatgatgcagattca
ggaaaaaatggagaagtgagcctgactattcaagaaggatcagggcccttccgtcttaaa
tccagcgataattttaattatttgattgtaacaaatggctccttggatcgggagaaggtt
aataattataacatcaaactcattgctcaggaccatggaagtccatctttagttactatt
gaaaacttgccagtttctgttctagatgagaatgacaatgcaccagcatttctcaaatct
atttatacgacttcaattaaggaaaacaattttgaagaggatgcagttcttgaagtcaaa
gccagtgatgatgaccagggactcaatggaaaggtttcttacaaaataaagaaacttagt
gaccagaaaagtttctccatacacccaacaactggaatcataagggtactccgaagctta
gaccatgaggaatctcagagctactcttttatagttgaatctgtggactatgggcatccg
ccactaactggttcgacgacagtccagattaatgttgaggatttaaacgacaatgctcca
gtcatcaaggaaccaaaaccaagaaacggggtggtttctgtgagcatccctgtgaatgca
cacaaaggggagattgtgaccgagcttggaaatgacacagaagaaaaacccacttctctg
ccgatcagtcattcagttttggatggattcaatggctttcctgcatcaacgataaaagcc
gaagatccagactcgggactcaatggacagctaaagtacatcatttcaaatggaaacaca
aatggcttgttctggatggatgaagatacagggcagctttttataaatgccaccaatgcc
acagagctgattgggagaacttttaagatggagctgtctgtagctgacatgggcactccc
agctacaagactgaggcgactctggaggtaactttcatcaatctccaggaccacttgaag
aactcttcacctggaaacagagggcaacttagctttactatgatgatggccatctgcttg
ggtgccacatgcctgcttcttctattggccatcgcgttggtgacaacattttgccgaccc
gagaaacgggacaaccatgcttacaattgcagacaggctgaatccagctacacccggcat
cctcgaaggccacaaaagaacatcagaaaatctgacatccagctaattccagtgatccga
gggcacaaagaagagccgtctgaggaagacagtgaggtccagcctctcactcctgctcca
ctaccagaagatcaacaaaccgagagagagtataacttcataccatcggttataaacaac
aacttccattcccaaagctacccggaagtggattcccctcagcatgttggccatcactgc
aaaacacttaggaaacctggaaatattgaacttgatgggagtttgaccctgacaccagct
acatcataccagaccctctgtaaaaccagaaacccttcctcgtcctcttcttcgctgtca
cattttagcaccttgaagcgtaataagctgcacccagaaagcgaagagtcacgttctcag
cgttcgacgtcccaggcgactctaaggaggccgaaaatgtcagatggtcagcaagatgca
gaacaccagcaaatgcttcgaaacctggttcgtctctccatggctgcatttggagacacc
atcgagctttcctcagcttccccagaggtgcagcagatctctcagctcctctccctgctc
cgtcagggtcagctgcaaccaaggacaaacttccgcggaaacaagtattcccatcggaac
ggcagatatggaggtcacgactgctcagattggcagagcaccaaagacagtgggcatgga
gagagtgaggctggtgatgtggactgggaagcaggaagagactcacccatagatccacag
ctggaagaaggcctcaataacctgctcaacagcccagatgatgttttctcagagatcagt
gaccccgcctggatggccaggctctccctgccactcacagccgattaccacgacaacgtc
tttgtccccaatggtcctccgtctcctgaaagcgagcttccgccgcgggatggcctgaac
tccacctcgtcattctccacctttggtaaaactccagagaaagatgaccatctgggcgga
gctttgctgtccgaggtcagcacattgtttgagatgctgatgactcagaaggccgacgcc
cacccaggccctcggcctgacgtcctgtacaggctgtcagcagcgtaccgacgctctctg
ggtctggacgtgacagcaacagctggaggcagcgcccaaaagaactgctctgaaaagagg
ccggccatggctgtggcctcaaaacatcaataccaatga
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