Xiphophorus couchianus (Monterrey platyfish): 114139275
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Entry
114139275 CDS
T05908
Name
(RefSeq) zinc finger CCHC domain-containing protein 7-like isoform X1
KO
K12597
protein AIR1/2
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114139275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114139275
03016 Transfer RNA biogenesis [BR:
xco03016
]
114139275
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
114139275
Transfer RNA biogenesis [BR:
xco03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
114139275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
Dmrt1
Motif
Other DBs
NCBI-GeneID:
114139275
NCBI-ProteinID:
XP_027864899
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All DBs
Position
23:complement(15086732..15092996)
Genome browser
AA seq
488 aa
AA seq
DB search
MYTNLLRGNYICLCFVEGMRFELTEDSITSESGEETCSGYMKHEKSAKLFSQLSRDSSPP
LLLAFSITSGKTQQDTSSVSSAGSQEQLEEDSDQPIEEWMILDGEEQAEDPSIQLNLGCW
ESSEEDVEDEGMTDKEVKSGGDTWAVSDKDKYGGTQSLGSRYFMAGRSSLCNICSRMGHV
ARSCYFHKQKSPTCVLCGVQGHVQRDCPSRPCSTCGLPSHGLNPCRVPPVWKQHCQRCGV
TGHLFDACPDLWRQYHLTVKLGVPFRPRNACSLKHKSHHAHCYNCSKRGHFGHECTKRRM
ISGTFPSLPYVCYYDTLDDILQQNAPMLTPAKELGSAGPLTSQQECCKDTPLVQGRSRTK
LEPGAHPGRRKTWPERRKERREVKRLRREAQAKWEGGFLGRHFCTIDDAVCPADPYKSIL
RSHRESKTSQENKKREEKTGKKSRKSRETEKWRKRGGIKRGDLHPHGDIDIGSEILLSPK
QRVRHRRR
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtacacaaacctgcttagggggaactacatttgcctctgctttgtggaaggaatgcgt
tttgagttaacagaggactccatcacttcagagagtggagaagagacgtgttctggttac
atgaaacatgagaaaagcgccaagctgttttcacagctcagcagagacagctctcctccg
ctgctccttgctttctccatcacctctggaaagactcagcaggacaccagcagtgtctcc
agtgctggttcacaggagcagctggaagaggacagcgatcagcctattgaggagtggatg
atcctggatggagaggagcaggcggaggacccaagcatccagctcaacctcggctgctgg
gagagctctgaggaggatgttgaagatgaaggtatgacagacaaggaagtgaaatcagga
ggggatacctgggctgtctcagacaaagacaagtatggaggcactcagtctctgggcagt
cgctatttcatggctggtcgttcatccctctgtaacatctgcagcaggatgggacacgtt
gccagaagttgctactttcacaagcagaaaagtcccacttgtgtcctttgtggcgtccag
ggccacgtccaaagagactgtccgagccggccctgttccacttgtgggctgccttcgcat
ggcctcaacccctgcagagtgcctccagtgtggaagcagcactgccagcgctgcggcgtg
accggccacttgtttgatgcctgcccagatttatggcgacaataccacctgactgtcaag
ttaggggttcctttcagacccagaaacgcctgcagtctcaaacataagagccaccatgct
cattgctacaactgctcaaaaaggggacactttggtcatgagtgcacaaagaggaggatg
attagtggcacttttccctcactgccttatgtttgttattatgacactctggatgacatt
ctccagcagaatgccccgatgctcacaccagccaaagaacttgggagtgctggaccccta
acttcacagcaggaatgttgcaaagatacgccattggtgcagggaagaagcaggacaaag
ctggagcctggcgctcatcctggaaggaggaagacctggcctgaaaggcgcaaagagagg
cgtgaagtgaagcgactgaggagggaggcccaggctaagtgggaaggaggatttctgggg
aggcatttttgcaccattgatgacgcagtttgccccgctgacccctataaatccatccta
cgcagtcatagagagtccaaaacctctcaggagaacaaaaagagagaggagaaaactgga
aagaagagcaggaagagcagagagacagagaagtggagaaaaagaggggggataaaacgc
ggggatttgcatccacacggtgacattgacattggaagtgaaatccttctgtctccaaag
cagagagtacgtcaccgaaggagatga
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