Xiphophorus couchianus (Monterrey platyfish): 114139304
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Entry
114139304 CDS
T05908
Symbol
ncbp1
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03013
Nucleocytoplasmic transport
xco03015
mRNA surveillance pathway
xco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114139304 (ncbp1)
09122 Translation
03013 Nucleocytoplasmic transport
114139304 (ncbp1)
03015 mRNA surveillance pathway
114139304 (ncbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114139304 (ncbp1)
03041 Spliceosome [BR:
xco03041
]
114139304 (ncbp1)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
114139304 (ncbp1)
Spliceosome [BR:
xco03041
]
Common components
Common spliceosomal components
Cap binding complex
114139304 (ncbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
AAA_13
AAA_11
Importin_rep_6
DUF1690
Vfa1
DUF1664
PHM7_cyt
DUF2203
Motif
Other DBs
NCBI-GeneID:
114139304
NCBI-ProteinID:
XP_027864963
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All DBs
Position
23:4876975..4887708
Genome browser
AA seq
796 aa
AA seq
DB search
MSRRRHSDENDGGQAHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCSVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKNNL
YNEAVYLVRFLSDLVNCHVIAAPSMVVMFENFVSVTQEEDVPQVRSDWFVYVVLSCLPWV
GKELYEKKDVEMDRLLSQIEGYLKRRVKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPGHMPDALYPIPRVIFRVFDYTDAPEG
PVMPGSHSVERFVIEENLHCIIKTHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPLPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTACIDRFINWFSHH
LSNFQFRWSWDDWADCLTMDLEKPKPKFVKEVLEKSMRLSYHQRIVDIVPPTFSALIPAE
PIFSFKYGDESGTSLPGYPVSITVSNAIKNRASNEEILAILKEVPNPNQEDDDDEGESFN
PLKIDVFLQTLLHLAAKSFSHSFSALGKFHEILKNLTESDDGKLHILKVIYEVWRNHPQM
IAVLVDKMIRTQIVDCAAVANWLFSQDMAHEFTRLFTWEILHSTIRKMNKHVQKIQKELE
EAKDKLEKQQHKRRDSGDDEDMEKNSEEDEEGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMLLTEHLVRCETGSVDISTPWYKNCIERLQQVFLMHHGTIQQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggaggcgacatagcgatgagaacgacggaggtcaagctcataagaggagaaga
acatctgagcccattgaaattgaagatcgcctggagtcgttgatatgtcgcgtaggagaa
aaaagcacttcttccctcgagagcaaccttgagggcctcgcaggtgtcctggaggctgac
cttcccaactacaaaaacaaaatcctgcgtattttatgttctgtcgctcgcctgctgcca
gagaagctcaccgtctacacgactttagtcggtctcctcaatgccagaaactacaacttt
ggtggcgagtttgtggaggcgatgatcaggcagctgaaggagactttaaaaaacaacctg
tataatgaagcagtttacctggtacgctttctgtcagatttggttaactgccatgtcatc
gccgctccatctatggtggtaatgtttgaaaattttgtcagtgttactcaagaggaagat
gtgccacaggttcgatcggactggtttgtgtatgtcgttctgtcctgtcttccctgggtt
gggaaggaactttatgagaagaaggatgttgaaatggaccgactcctcagtcagattgaa
ggctacctcaagaggagagtgaagactcatgttcccatgctgcaggtgtggacagcagag
aaaccccatccacaagaagagtatctggactgtctgtgggcccagatccagaagctgaag
aaagaccgctggcaggagcgccacatccttcgtccatacatcgctttcgacagcgttctc
tgtgaggcgctgcagcacaacctgcccccgttcaccccgccggggcacatgcctgacgcc
ctgtaccccatcccccgggtcattttccgcgttttcgactacaccgacgccccagagggt
cccgttatgccgggcagccattctgtggagcggtttgtgattgaagaaaacctgcactgt
atcatcaaaacccactggaaagagaggaaaacatgtgctgcccagttgctcagttaccct
ggaaaaaacaagatcccactgaactaccacatcgtggaggtgatctttggagaacttttc
cagctgccattaccgccccacatcgacgtcatgtacactacgcttctcatcgagctctgc
aagctgcagccagggtcactccctcaagttctggcccaggccacagagatgctttacatg
aggctggacacaatgaacaccgcctgcatagacagattcatcaactggttttcccatcat
ttgagcaacttccagtttcgatggagttgggatgactgggcggactgtttgacaatggat
ttagagaaaccaaagcccaagtttgtcaaagaggttctggagaaatcgatgagactttca
taccatcagaggattgtggacatcgtccctccaactttctccgccctcatccctgctgag
cccatcttttctttcaaatacggagacgagagtggcacctcgttgccaggttacccagtt
tccattacagtttccaacgccataaagaaccgagcgtccaacgaggaaatcctcgccatc
ctgaaagaagtccccaacccaaaccaggaggatgatgatgatgagggtgaaagcttcaac
ccactgaagattgatgtgtttcttcagactcttctccatctggcagcgaagtccttcagc
cattccttcagcgcgcttggcaaattccacgagatccttaaaaacctgacggaaagcgac
gatgggaaactgcacatcctgaaagtgatttatgaggtgtggaggaaccaccctcagatg
atcgccgtgttggtggataaaatgattcggacgcagatcgtggattgtgccgctgtcgct
aactggctcttctctcaggacatggctcacgagttcacaagacttttcacctgggagatt
ctgcactcaaccatccgaaagatgaataaacatgtgcagaagatccagaaggagctggag
gaagctaaagataagctggagaaacagcagcacaagaggagggacagcggggacgacgag
gacatggagaagaacagtgaggaggacgaggagggtcagctggaggagcagattgagagg
ttgcaggaaaaggtggagtcggctcagagcgagcagaaaaacctcttcctcgtcatcttc
cagcgcttcatcatgctgctgacagagcatctggttcgctgcgagacgggcagcgttgac
atcagcacaccctggtataaaaactgcatcgagcggctgcagcaggtcttcctcatgcac
catggaaccatccagcagtatatgggaactctggagaacctgcttttcaccgctgagctc
gaccatcacatcctggctgtctaccagcagttctgcgcgctgcagctctga
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