Xiphophorus couchianus (Monterrey platyfish): 114139307
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Entry
114139307 CDS
T05908
Name
(RefSeq) protocadherin-11 X-linked-like isoform X1
KO
K16498
protocadherin delta 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
114139307
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xco01009
]
114139307
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xco04515
]
114139307
Protein phosphatases and associated proteins [BR:
xco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
114139307
Cell adhesion molecules [BR:
xco04515
]
Cadherins
Protocadherins
114139307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
DDE_3
DUF6249
Motif
Other DBs
NCBI-GeneID:
114139307
NCBI-ProteinID:
XP_027864966
LinkDB
All DBs
Position
23:14564357..14732140
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AA seq
1319 aa
AA seq
DB search
MNLASRVHVLVALLTCLVLLCKAQERDYIVKEEQQENVRIGNLRKDLDLNLDPNIRLSSP
LQFKPVYKTGDVPLVRVEASTGEIFTTNHRIDREKLCSGIFTEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVNEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPIFRDSELEVSVPENAPMGTSVAQLHATDADLGSNAQVHFSFSNQISSSTKRHF
AINSSTGLITVKQPLDREVTPVHKLIVLASDGSSTPSRATVIVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEFQLSIPENND
PLMQLIKISATDADSGHNAEIIYTLGPDAPDGFNIDRRSGILSVGKRLDREKQERYSFTV
IARDNGSAPLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDTDAG
DNAVITLSILNGKDSFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDGGQPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTTSPGSVVTRVFAIDNDTGMNAELQYSIISNII
ITSRVSPRGLFSIDKTTGNITLQEKIVLADQGLHRLVVKVKDLGQPESLHAIALVHLFVN
DTVSNSTFIQEQLRKSMETPLDRNIGDNEITPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQENRQIKKKKKRKKRSPKSLLLNFVTIDESKPEDP
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECGCQGGFKAAGQIATRQNPGQ
TPEKTFNSPPPICPHKSPDLNPVEHLWDVVEREICIRDVQSRNLPQLCDEACQLGKITSV
NLDSVVRNMRNLSSNLDFSDNYLLQTQRRVTFHLPDGSQESCSDSGLGDAEPSSTASATQ
PLPLSFPQEEYYEQASPNSRTEGDGNSDPESTIEVNLKKALAEASETCTQECLILGHSDS
CWMPPTLAQFQSPGSISPTSTPTTTTITAALPSFGFQGVKANIGGMGVMDGRHTLGRSVP
KRDELDKGFNRPQFYNTLDRHCSSKKEDPVKVIPLASFSSPGQHTPTGGSSSFLHEHQL
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgaacttggcaagtcgggtgcatgttctggtggccttgctcacctgtttggtcttatta
tgcaaggcccaggagagggactatatcgtgaaggaggagcagcaggagaacgttcgcatc
gggaatctgcgcaaggacctcgaccttaacctggaccccaacatcagactgtcctctccg
ctgcagttcaagcctgtgtataagacgggcgacgtgcctttggtgagggtcgaggccagc
acaggggagattttcaccaccaatcacaggattgaccgggagaagctgtgctcggggatc
ttcacggagaaacgctgctactatgagatcgaggtggcggtgctgcccgacgagatcttt
cgattggttaagatccggttcctgattgaggatgtgaatgacaatgcacccctcttccag
tccactgtaataaacatctccatccctgaaaacacagccatcaacacccgatacccagtg
ccatcagcatttgaccctgatgtgggaattaatgggatccaacactatgagctggtcaag
agtgtcaatgagtttggcttagacatcattgagacccctgaaggtgacaagtggccacaa
ctcattgttcagcagaatcttgatcgggagcaaaaggacacctttgtgatgaagatcaag
gtagaagatggtggcaacccccctaaatctagcactgccattctccaggttaccatttct
gatgtcaacgacaatcgtcctatcttcagggacagtgagttggaagtctctgttccagaa
aatgctccgatggggacttctgtggctcagcttcacgccacagatgcagacctgggttcc
aatgcacaagtccatttttcattcagcaaccagatctcctcctcaacaaagcgtcatttt
gccatcaatagctctactggactgattactgtaaagcaacctctagaccgggaggttact
cctgttcataaactcattgttctcgcaagtgatggcagctcaaccccatcaagagccaca
gtgattgtcaatgtcacagatgttaatgacaatgttccttccatagacactcgttacatt
atcaacctggtaaatgggactgttctactgtctgagaatgctcctctcaacaccaaaata
gcccttattactgttactgacaaggatgccgatctgtatggcaaagtggcttgctacact
gaccatgatgttcctttccggcttaagcctgtctttaatgatcagttcttactggagaca
gctgcccctctagattatgaaaccactcgtgaatatgctattaagatagtggcctcggac
agaggaacgcctcctttgaacacttctgctatggtcttaattaaaatcaaggatgagaat
gacaatgcacccattttccctcagcctgaatttcaactgtcaataccagagaacaatgac
cccttaatgcagttaataaaaatcagtgccactgatgcagatagcggacacaatgctgag
ataatttatactcttggccctgatgcaccggatgggtttaacatagacaggcgatcagga
attctctctgttgggaaacgactggacagagagaagcaagagaggtactcattcactgtc
atagcaagagacaatggctcagcacccttacagagtaatgtcactgttaggctaattgtt
caggacctcaatgacaacagcccagctttcactcaccctgagtacaacttctatgtgcct
gagaacctgccgctttatgggacagtgggcttgatcacagtgacagatacagatgctgga
gataatgctgttatcaccttgtctattttgaacggcaaagacagtttcatcattgaccct
caaactggtgtgatcaaaccaaatatcacctttgacagggagcagcaaagctcatatacc
ttcatggtcaaagcagttgatggaggacagcctccaagttcctcctatgccaaggtcaca
attaatgttgtcgatgtgaatgacaatcgccctgtgtttgttatcccttcctccaattat
tcatatgacctggtacgaaccactacctccccaggttctgtggtgaccagagtgtttgcc
attgacaatgacacaggtatgaacgctgagttgcagtacagtatcatcagcaacatcatc
atcacatctagggtctcccctcgaggtctcttttccatcgacaaaacaacgggtaacata
acgctgcaggagaaaattgtactagctgatcagggactgcatagactggtggtcaaggtc
aaagatttaggccaacctgagtcattacatgctattgcacttgtacacttgtttgtcaat
gacactgtgtcaaattctacctttatccaagagcagctacgaaaaagtatggaaacacca
ttggatcgtaatataggggacaatgagataacgcctcaagccaatggatatgtaattgtt
gttatagcgatcatagcaggaaccatgactgttattttggtgatatttgtcaccgccttg
gtgcgctgccggcagacacctagacataaagtagttcagaaaggcaagcagagtggggag
tgggtgtcacccaaccaagagaaccgtcaaatcaagaagaagaagaagagaaagaagcga
tctcctaagagccttctcctaaactttgtgaccatagatgaatccaagcctgaagacccc
acacatgagcatgttaatggcaccctggatcttcctgtagagcttgaggagcagaccatg
ggaaagtacaattgggcgaccacgcctacaaccttcaaacctgacagcccagacttagcc
aagcattataaatctgcatcccctcagcccacatttcaaatcaaaccagaaactcctgtg
gcccctaagaaacatcacgtgatccaggagctccccttggacaatacttttgtggtgggc
tgcgactcactctccaagtgttcatcgactagctccgacccatacagtgtctcagagtgc
ggctgtcaggggggattcaaggctgcagggcaaatcgccacccggcagaaccccggccag
acaccagagaagacttttaactctccaccacccatttgtcctcataagtcgccagatctc
aatccagtagagcacctctgggatgtggtggaacgggagatttgcatcagggatgtacag
tcaagaaatctgcctcaactgtgtgatgaggcctgtcaacttggcaagataacctctgtg
aatcttgactctgtggtgagaaatatgagaaatctttcttcaaacctggatttttcagac
aactatctactgcagacccaacgtcgtgtgaccttccatcttccggatggttcccaggaa
agttgcagtgacagtgggcttggggacgcagagcccagcagcacagccagtgccacccag
cctctccccctaagcttcccccaagaggagtactatgagcaagcgtcacctaatagtcgc
accgagggagacggaaattcagatcctgaatctaccattgaagtaaatttgaagaaagct
ctggctgaggcatctgagacctgcacccaggagtgtctaatactgggccactctgacagc
tgctggatgcccccgaccctggcccagttccagagccctggcagcatcagccccacttct
acccctaccaccaccaccatcactgctgcgctcccctcctttggcttccagggagtaaaa
gctaacataggtggcatgggggtcatggatggccggcacactctgggtagatctgtgccc
aaaagagatgaactggacaaagggttcaaccgaccacagttctacaacaccctggataga
cactgcagcagtaagaaggaagacccagtgaaggtcattccactggcaagcttctcctcg
cctgggcagcacactcctactggtggcagcagctctttcctacatgagcaccagctgtaa
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