Xiphophorus couchianus (Monterrey platyfish): 114139323
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Entry
114139323 CDS
T05908
Name
(RefSeq) collagen alpha-1(XXIII) chain-like isoform X1
KO
K24355
collagen type XXIII alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114139323
Glycosaminoglycan binding proteins [BR:
xco00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114139323
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
114139323
NCBI-ProteinID:
XP_027864997
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Position
23:18006157..18153883
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AA seq
618 aa
AA seq
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METASSGSNGESKPVCQCAIKSGVQRWLPGFPIALCLLMSLSSVTVCLLMSFRTHRLYTE
MDKASILQAPQRSFKNEDGTLVSELSAPVGKLVEEKVAALMPKLRTARDVGQECSCPPGP
PGKRGRIGRRGEPGPPGKVGRDGYPGPLGLDGKPGLPGLKGSQGLPGTKGEKGDQGDIGP
RMVFPRYDHSFLAGEQSSSFQRRFLKGDQGQAGPAGPPGPPGPPGARGPPGNTGKDGPGG
EPGLPGRDGVEGPQGPPGKPGEDGEPGYPGVHGPPGQRGEPGMGEKGERGMDGVPGLKGD
KGEAGEQGPQGPMGYPGEKGAAGSSDIVDFNGKLLDAFQAIKTISVSGPPGPPGPPGPPG
EKGELGLPGPAGVDGEKGSRGDSGEMGPPGERGEKGEMGLSGPSGMDGYKGEKGDCRLDD
NLIQMISQPGPPGPPGIPGSPGSMGLHGMPGPKGEPGAGVKGEKGEHGSPGYKGLDGHQG
PPGAPGLVGLPGAKGEKGRPGEPGLDGFPGLRGDKGERGEKGDKGDRGTVGKRGLKGNKG
EQGPPGLDQPCPVGCDESKGHSVKAGLSSPETAPLPPSGPAAPCPVGHDGLPIPGCLHKR
QFEEMVRQKLKRKRLSQP
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggagacagccagcagcgggtctaacggggaaagcaaaccggtgtgtcagtgtgccatc
aagtccggagtccagcggtggctgcctggctttcccatcgctctctgtctgctcatgtct
ctgagctcagtcaccgtgtgtcttctgatgagcttcaggacccaccggctgtacacggag
atggacaaggcgtccatcctccaggctccgcagaggtctttcaaaaacgaggatgggact
ctcgtttcagagctcagcgccccagtgggaaagcttgtggaggagaaagtggcagctctg
atgccaaaattgcggaccgctagggatgttggccaagagtgctcctgtcctccagggcct
ccaggaaaacgcggacgcatcggaagaagaggggaacccgggcctcctggcaaggttgga
cgggatggatacccggggcctcttggcttggatggcaaaccaggtttaccaggtctcaaa
ggaagtcagggcctgcccggaaccaagggagagaagggcgaccaaggagacattgggcca
aggatggttttcccccgatatgatcacagctttctcgctggagagcagtccagcagcttt
cagagacgctttctgaagggtgatcaaggccaagctggacccgcggggcctcctggtcct
cctgggcctcctggtgcccgtgggcccccaggaaacaccgggaaggatgggcctggtgga
gagccgggtttgccaggtcgggatggtgttgagggaccgcagggaccgcctgggaaaccg
ggagaagatggagagcctggctatccaggagtgcacggccctccagggcagaggggggag
ccaggtatgggagagaaaggagagagagggatggatggagtcccgggattaaagggtgat
aaaggagaagcaggagaacaaggaccacagggacctatgggttatcccggtgaaaagggc
gctgccggctcctcagatattgtcgatttcaacgggaagctcctagatgctttccaggcc
atcaaaaccatcagtgtttcgggcccacctggaccaccaggacctcctggccctccaggg
gaaaagggagagcttggattgcctgggcctgcaggagtagatggagaaaagggatccaga
ggtgattcgggtgaaatgggacctcctggtgagagaggagagaaaggagagatgggtctg
tctggaccttctgggatggacggatataagggggaaaaaggagactgccgactggatgac
aacctgattcagatgatctctcagccgggccctcctggccctccaggaatacccgggtcc
ccaggatccatgggtctgcatggtatgcccggtcctaagggcgaaccaggagctggggtc
aagggagagaaaggggagcacgggtctcctggatacaaagggctggacggccaccagggc
ccaccgggggctcctgggttagtgggccttccaggtgcaaagggggaaaagggccgacca
ggggagccgggactagatggttttccgggtctgagaggagacaaaggtgaacgaggagaa
aaaggagacaagggtgacagagggactgtcgggaagagaggtctgaagggtaacaaggga
gaacaaggtcctccaggactggaccaaccctgtcctgtgggctgtgatgagagtaaaggt
cactctgtgaaggcagggctttcttctcctgaaactgctcctcttcctccttctggccct
gcggccccctgtcctgtgggacatgatgggcttccaataccaggctgtttgcataagaga
caatttgaggaaatggtgaggcagaagctcaaacgtaagcgtctctctcagccctga
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