Xiphophorus couchianus (Monterrey platyfish): 114139461
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Entry
114139461 CDS
T05908
Symbol
nfkb1
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04010
MAPK signaling pathway
xco04210
Apoptosis
xco04218
Cellular senescence
xco04620
Toll-like receptor signaling pathway
xco04621
NOD-like receptor signaling pathway
xco04622
RIG-I-like receptor signaling pathway
xco04623
Cytosolic DNA-sensing pathway
xco04625
C-type lectin receptor signaling pathway
xco04920
Adipocytokine signaling pathway
xco05132
Salmonella infection
xco05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
114139461 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
114139461 (nfkb1)
04218 Cellular senescence
114139461 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
114139461 (nfkb1)
04621 NOD-like receptor signaling pathway
114139461 (nfkb1)
04622 RIG-I-like receptor signaling pathway
114139461 (nfkb1)
04623 Cytosolic DNA-sensing pathway
114139461 (nfkb1)
04625 C-type lectin receptor signaling pathway
114139461 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
114139461 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
114139461 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
114139461 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114139461 (nfkb1)
Transcription factors [BR:
xco03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
114139461 (nfkb1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_5
Ank_4
Death
Motif
Other DBs
NCBI-GeneID:
114139461
NCBI-ProteinID:
XP_027865229
LinkDB
All DBs
Position
23:complement(390266..417038)
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AA seq
953 aa
AA seq
DB search
MAADENYLHPSSQIFDTMMDPSFLEYSPFVPMPQMTALQSVDGPFLQILEQPKQRGFRFR
YGCEGPSHGGLPGASSEKNRKTYPTVKICNYQGQARVVVQLVTALTQLPQLHAHSLVGKQ
CDKGICIADLQSKDSTISFPNLGILHVTKKNVAKTLEERMVEAFRMGYNCGVAIHPEIDA
LQGEVRVPRELSDHQRSMIISAAAAQAKEMDLSVVRLMFTAFLPDSDGGFSRRLEPVVSE
PIYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDDSGLTWEAL
GDFSPTDVHRQFAIVFKTPKYRDQNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKE
EVQRKRQKTLPNFQDFSGHGGGGGGGGLYRGGGGGGGPASGVGGPGSAGGGYYQGFSSYS
YGGAGGGFSSAYSAGLGGGGGTKHALQSEAAEDSGDDSDPDNDPASGAVLRGSAQSDGSD
VDPDEALMEATCRQLDALFRYSVTGDSAYLLAPQRPLMAHRTTTETLGCIWRCCTASRRL
TSLTQVVSTLTGEELLNMRNHLYQTPLHLAVITRQKQAAEVLLLAGADPTLTDRHGNTVL
HLAAQQEGDGMVELLLRRREMRELLQFSNTAGLCAIHLAVLANRLAALRELLVGGADVEA
QEHSGGRTALHLATETDNVSLAGCLLLEGNAKVDSCTFNGSTPLHVAAGRGSVKLTALLM
AAGADPHRENFEPIFIRDEEEEEEDEDDEGYISGTTPVNMATCPEVLDLLNGQEYEPRSQ
RAFVPPQGDLSVLDVQVKRAVCGALEAEGCWENLAHHLGLGILNTAFRLSPNPARTLLES
YEVSGGTVSDLLAALRSAGGCRALSILEGALRQNQDTAEEVQNPLVQNLKRTLGTTAASA
TAGWSSPRCSALIGQHPHPPLHHSKILFYFKELLTQLDRAGLDRTGPLNSDLY
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgacgagaactacctgcacccctctagccagatattcgacaccatgatggac
ccgtccttcctggagtattcccccttcgtcccgatgcctcagatgacggctctgcagtca
gtggacggaccgttcctgcagatcctggagcagcccaaacagcgcggcttcaggttccgc
tacggctgtgaaggtccgtcgcacggcggcctgcccggagcctccagcgagaagaacagg
aagacgtacccgacggtgaagatctgtaactaccagggtcaagcccgggtcgtggtccag
ctggtgacggcgctgacccagctgccgcagcttcacgctcacagcctggtggggaagcag
tgcgataaaggcatctgcatcgctgacctgcagtccaaagactccaccatcagttttccc
aacctggggatcctccatgtgaccaagaagaacgtggcgaagacgctggaggagcggatg
gtggaggccttcaggatgggctacaactgcggcgtcgccatccacccggagatcgacgca
ctgcagggggaggtccgggtcccgcgggagctcagcgaccaccagcgcagcatgatcatc
agcgccgcagccgctcaggccaaagagatggacctgagcgtggtgcgcctcatgttcacc
gccttcctgcccgacagcgacggcggcttctccagacgcctggagcccgtggtgtccgag
cccatctacgacagcaaggctccaaacgcctcaaacctgaagatcgtcaggatggaccgg
accgccggctgcgtgacggggggagaggaggtctacctgctttgtgacaaggtccagaaa
gatgacatccaggtgcggttctacgaggaggacgactcgggcctgacctgggaggctttg
ggcgatttctcccccacagacgtccacagacagtttgccatcgtcttcaagaccccgaag
tatcgagaccaaaacctgcagaagccgacgtctgtcttcgtccagctaaagaggaaatcc
gacaacgagaccagcgagcccaaaccgttcacctaccatccacagatcatagataaagag
gaggttcagcggaagaggcagaagacattgccgaacttccaggacttcagcggacatgga
ggaggaggaggaggcggggggctgtaccgaggtggaggaggtggaggaggtccggcttca
ggagtaggaggtccaggctcagcaggaggaggatactaccagggtttctcctcctacagc
tacggaggagcaggaggaggattctcctcagcgtattcagctggtcttggaggaggcggc
ggcacaaagcatgctttgcagagtgaagctgcagaagacagcggcgatgacagcgaccca
gacaacgacccggcgtcgggcgctgtgctacgaggctccgcccagtccgacggctccgat
gtggatccagacgaggcgctgatggaggcgacctgcaggcagctcgacgctctcttccga
tactccgtcaccggagactcggcgtacctgctggctccacagcgccccctgatggcgcac
aggacgacgacggagacactgggctgcatctggcggtgctgcacagccagcaggaggctg
acgagtctgacccaggtggtgtcgactctgacgggagaggagctgctcaacatgaggaac
cacttgtaccagactcctctgcacctggcggtcatcactcggcagaagcaggcggccgaa
gtgctgctgctggctggcgctgacccgactctgacagatcgccacggcaacacggttctt
cacctggcagcgcagcaggaaggagacgggatggtggagcttttactgcgacgcagagag
atgagagagttgctgcagttcagcaacacagcaggtctgtgtgccatccacctggcggtt
ctggccaatcggctggcggcgctcagggagctgctggtgggcggggccgacgtggaggct
caggagcacagcggcggacgcaccgcgctgcaccttgccacggagaccgacaacgtgtcg
ctggccggctgcctgctgctggagggaaacgccaaggtggacagctgcaccttcaacggc
tctacccccctgcacgtggccgcggggcggggctccgtcaagctgacggctctgctaatg
gctgcaggtgccgacccgcacagggagaactttgagccgatcttcatcagggatgaggaa
gaggaggaggaggacgaggatgatgaaggctacatctcaggaaccactccagtcaacatg
gccacctgccctgaggttctggatcttctaaacggtcaggagtacgagcccaggagccag
cgagccttcgtcccgccacagggcgacctctcagttctggacgtgcaggtgaagcgggcc
gtgtgcggcgcactggaggctgaaggatgctgggagaacctggctcaccatctgggcctc
ggcatcctgaacacggcgttccggctgagtccaaacccagccagaaccctgctggagagc
tacgaggtttctggtggaaccgtttcggacctgctggcagctctccggtctgcaggtggc
tgcagagcgctgagcatcctggagggggcgctgcgccagaaccaagacacggcagaggag
gtccagaaccctctggtccagaacctgaagcggaccttgggaacgacagcggcgtctgcg
acagcggggtggagctctccacggtgtagcgctctgattggccagcatcctcatcctcct
cttcatcactcaaagattctattctattttaaagaactgctgacacaactggaccgggcc
gggttggaccggaccggaccgctgaactctgatctctactga
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