Xiphophorus couchianus (Monterrey platyfish): 114139681
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Entry
114139681 CDS
T05908
Name
(RefSeq) putative protocadherin beta-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
xco04515
]
114139681
Cell adhesion molecules [BR:
xco04515
]
Cadherins
Protocadherins
114139681
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
114139681
NCBI-ProteinID:
XP_027865533
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Position
23:complement(16556100..16564155)
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AA seq
1018 aa
AA seq
DB search
MERKLCRGCWVPVTGLVICLLLCACVVDLVLAQIRYSIPEELDHGAFVGNIAEDLGLDVA
RLSARRFRIVSGAKKQYLEVNLENGILFVNEKIDREDLCERSPSCFLHLQVVIENPLELY
RVEVEILDVNDNSPSFPWTEFNLDITESAAPGSRFPLESAQDQDVGTNSLRSYQLSANQH
FVLNIQTRNDGSKFAELVLDTPLDREQQKRHEMVLTAFDGGSPERSGTALITITVLDAND
NVPVFDRSVYRASLVENAPRGTLVLKLNATDLDEGSNGEVTYAFSGHAPLKVRELFSVDP
YMGEIRVKGVVDYEKASVYELYVQAKDRGPSAVAVHSKVLVDILDVNDNAPEVILTSVST
PVQEDASPGTVIAVISVMDRDSGENGNVDCQIPNNVPFQLHSSFKNYYTLVTSEPLDRET
VSEFNITLTARDLGSPSLSTRRTILVQVSDINDNPPRFSQPSYTVYVTENNAPGASICSV
SAFDPDSNQNAYLSYSILEGQIQGMPVSTYVSINSDNGNIYALRSFDYEQLRNFQILVQA
QDAGFPPLASNVTVNVFVLDQNDNAPVIVSPLPKNGSVATEVVPRSVDAGYLVTKITALD
ADAGQNSRLSYQVIQATDPGLFSVALYTGEIRTIRRLVEKDATRQRLVILIKDNGQPPLS
ATASIVLTVVDSVPESLSDFGDLTLSPKPPSNLALYLIVSLSTISLIFLVAIIVLAAVKC
YKDQETHSGYNLPPLACCCCGGFQPEPPPEVFKKSNLNLQISSASKVPTNCMEVNGNSSF
SQSYCYKACLTPESAKSDFMFLKPCSPSSTPRNNEAKNADNSWNAHSRSASVNNGATTPN
ELKQPNTDWTLTKTQNSSIKSYNSINMDGTLMRKAMHADPENYVTSMAPGQYWTWGTQMK
GMKDYKMSPSPSGIPSRPWTPRCTPPPQQQQQQPQPSIPSHPHPHPHPHPHPHPHPPPDY
HHNVYIPGTPSGFCTLRPTAQRSELDVHNSFSTFGKKRRLQMSPQGEAAVINNDLYND
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atggaacgtaaactctgcagaggctgctgggttccggtgactggtctggtcatatgtctt
ctcctgtgtgcgtgtgtggtggacctggtgctcgcgcagattcggtactccatccccgag
gagctggatcacggagcatttgtgggcaacatcgcagaagatctgggtctggatgtggcc
aggctttcagcgcgaaggtttcgcatcgtctccggcgcaaagaaacagtatttagaagtg
aacttggagaatggaatcctctttgttaacgaaaagatagacagagaggacctgtgtgaa
agaagcccaagctgttttctacacctacaagttgtcattgaaaacccgttagaactgtac
agagtggaagtggagattttagatgtcaatgacaattcccccagcttcccgtggactgag
ttcaatctcgacatcacagagtctgctgcgcccggctcacgcttccctttagagagcgca
caggaccaggacgtgggcaccaactctctgcgctcctaccagctgagcgcaaaccagcac
tttgtgctcaacatccagacgcgcaatgatggcagcaagtttgcggagctggtgctggat
acgccgcttgacagggagcagcaaaaaaggcacgaaatggttcttactgcttttgatgga
ggttcacctgaacgctctgggacagcgctaataactatcactgtgttagatgccaacgat
aacgtgcctgtctttgaccgctcggtttatagggcgagcttggtggaaaacgcacccagg
ggaacgctggtgctgaagttaaacgccacagacttggacgaaggctcaaatggggaagtt
acatacgcgtttagcgggcacgcacctcttaaggtgcgtgaattgttcagcgtggacccc
tatatgggggagatacgtgtgaagggcgttgtggactacgagaaagccagtgtgtatgaa
ctgtacgttcaagcaaaagacagaggaccgtcggctgtggcagtacacagtaaggtactg
gtggacatcctggatgtgaatgacaacgctcccgaagttatcctcacatcagtgtccaca
cctgtccaggaggacgcgtcgcctggcacagtaatagctgtgatcagcgtcatggaccga
gattcgggagagaacgggaacgtggactgtcagattccgaataatgtcccctttcagctc
cattcatcttttaaaaactattacacgctggtgacaagcgagccgctggacagagagact
gtgtctgagttcaacatcacacttacagccagagacttgggctccccttcactctccacc
agaagaacaattctggttcaagtgtctgacataaacgacaaccccccgcggttctctcaa
ccttcatacacagtttatgtgaccgagaataacgccccgggcgcttccatttgctctgtc
tctgcattcgacccagattctaaccagaacgcatatctgtcttattctattctggagggt
caaattcagggcatgcccgtgtccacttatgtctccatcaactccgacaacggcaacata
tacgcattgcgctctttcgattatgagcaacttcgaaactttcagattctggtacaggca
caggacgctggcttcccccctctcgccagcaatgtcacggtcaacgtgtttgttctggac
cagaatgacaacgcgcctgtcattgtgtccccgctgcccaagaacggctctgttgccacg
gaggtggttccgcgctctgtggacgcggggtatttggtgaccaaaatcacagcgttagac
gcagacgcagggcaaaactcccggctgtcttaccaggttattcaggcgactgacccgggc
ttgttcagcgtggctctatacacaggcgaaatcaggaccattcgccgattagttgagaaa
gacgcaacaagacaaaggttagtcatattaatcaaggacaacggacagccgccgctctct
gccacagcctctattgtcctcacagttgtagacagcgtgcccgagtcgctgtcagatttc
ggagatctaacactcagcccgaaacccccctcaaaccttgccttgtatctcatcgtgtca
ctcagcacaatatctttaatattcctggtggcaatcatcgtgctggctgctgttaagtgc
tacaaggaccaggagacccacagcggttacaaccttccgcccttagcctgctgctgctgc
ggggggtttcagccagagccgcccccggaggtgttcaaaaaatccaacctcaacttgcag
atttcatccgcgtccaaagtacctacgaactgcatggaggtgaatggaaatagcagtttt
tctcagtcatattgttataaagcctgtctgacccccgaatcagccaaaagtgactttatg
tttctgaagccgtgcagcccgagcagcacgccgaggaacaacgaggcgaagaacgcggac
aactcgtggaacgcgcacagccggagcgcatctgtcaacaacggagctacaactccgaac
gagctgaagcaaccaaacacagactggactctcacaaagacccagaactcttccatcaaa
agttacaactctatcaatatggatggcacacttatgcgtaaggcaatgcatgcagaccca
gagaactatgtcacttcaatggcacctggacaatactggacctggggaactcaaatgaag
ggcatgaaagactacaaaatgtccccatcacctagtgggattccttctcggccctggact
cctcgatgcacgcctcctccacagcagcagcagcagcagccgcagccatcaattccctca
catccgcacccacatccacacccacacccacacccacacccacacccaccacctgactat
caccacaacgtgtacattcccggaactccatcaggcttctgcaccctgcggccaacagca
cagcgaagtgaactggacgtccacaattctttctccacgtttggcaagaaacgacgtctt
cagatgtctccgcaaggggaagctgcagtgataaataatgatctgtacaatgactga
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