Xiphophorus couchianus (Monterrey platyfish): 114141125
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Entry
114141125 CDS
T05908
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
114141125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114141125
Enzymes [BR:
xco01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
114141125
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
114141125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
PRY
Ig_DSCAM-DSCAML_C
zf-RING_2
zf-C3HC4_3
Pur_ac_phosph_N
zf-C3HC4_2
zf-RING_5
NDNF
Motif
Other DBs
NCBI-GeneID:
114141125
NCBI-ProteinID:
XP_027867366
LinkDB
All DBs
Position
24:13565083..13599149
Genome browser
AA seq
687 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILVSHCATNESVQSIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSAGLPLPLAGPHSGPNSPIEEGSNRLAL
VPVSAAMSSPETPPEPVQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTGHR
LIEPMPDSHLRGLQCLEHEEEKVNMYCVTDDQLICSLCKLVGRHRDHQVAALSDRYEKLK
QALDSNLSNLIKRNNELESLMGKLIQTCQHVEVNASRQEGKLLEECDVLIDIIQQRRQII
GSKIKEGKAQRLRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKSINERVS
MATASTQVLIPEIHLTDTFDTFALDFTREKKLLENLDYLTAPSAPCIREELCTASYDTIS
VHWTSDDEFTVVSYELQYAIFTGQSNIASLCNSLESWMIVPNIKQNHYTVHGLQSGTKYI
FVVKAINQAGSRSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETTSKKGHSQD
RFTSQSSYGVVGNVYIDSGRHYWEALIGGSTWYAIGIAYKSAPKHEWIGKNSASWVLCRC
NNSWVVRHNSKELAIEPSPQLRRVGVLLDYDAGYVAFYDAVGSQHLHTFHVSFIQPVCPV
FNVWNKCLTILTGLPIPDHLEGLEPGN
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggacactctggagtcagagctgacctgtccaatctgcctggagctctttgaagacccg
ctgctgctcccttgtgcccacagcctgtgcttcggctgtgcccaccgcatcctcgtctcc
cactgcgccaccaacgagtccgtccagagcattggcgcttttcagtgccccacttgtagg
tatgtcatttccctgagtccggagcgtggattagaaggactcaagagaaacgtgaccttg
cagaacattatcgatagagttcaacgggcctcatcctcggctggcctccctctgccgttg
gccggtccccacagtgggcccaactctcccattgaggaagggagcaaccggctggctctg
gttcccgtcagtgccgccatgtccagcccagaaactccgccggaaccagtccaatgccag
ttctgcgagcaggacccaccccaggatgccgttaagacgtgcgtgacatgcgaagtgtcg
tactgcgaggagtgcctcagggcaactcacccgaacaagaaaccattcacaggtcaccgg
ctcattgagccaatgcctgattctcacctcagagggctccagtgcctggagcatgaggag
gagaaggtgaacatgtactgcgtcactgacgaccagctgatctgctcactgtgcaaactg
gttgggaggcacagggatcatcaagtggcagccctaagcgaccgctacgaaaaattaaag
caagctcttgactccaacctgagcaacttgatcaagaggaacaatgagctagagtcgctt
atggggaagctgatccagacttgtcaacatgtcgaggtaaatgcatcacgccaggagggc
aagctcctggaggagtgcgacgtcctgattgacatcatccagcagaggaggcagatcatt
ggcagcaagattaaagaggggaaggctcaaaggcttcggaagctggcccagcagatttcc
aactgcaagcagtgcatcgagagatcctcggccctcatcacacaggccgatcagacactg
aaggaaacggatcacgctcgcttcctgcagacggccaagagcatcaatgaaagggtttcc
atggcaacagcatcaacccaggtgctgattccagagatccacctaacagacacgtttgac
acgtttgctctggatttcaccagagagaagaagttgctggagaatctggattacctcaca
gctccaagcgctccatgcataagggaagagttgtgcacagcttcctatgacacaatcagt
gtccactggacatctgatgatgaattcacagttgtgtcctatgagctgcagtacgccatc
ttcaccggacagtccaacatcgccagtctatgtaactcattagaaagttggatgattgtt
ccaaacatcaagcaaaaccactacacagtgcatggtttgcagagcggcaccaagtacatt
ttcgttgtcaaggccattaatcaagcaggaagcagaagcagtgagccggggactctaaaa
accaacagccagccattcaaactggatccgaaatctgctcacaagaagctcaaggtttcc
catgataacctcacagtggagcgggatgaaaccacgtccaagaaaggccacagtcaggat
cggttcaccagccagagcagctacggcgtggtgggaaatgtctacatcgacagcgggcgt
cactattgggaggctctgattggagggagtacatggtacgctataggcattgcctacaag
tctgcccccaagcacgagtggattggcaagaactcggcttcttgggtgctctgccgctgc
aacaactcctgggtggttcgtcacaacagcaaggagctggccatcgaaccctcaccccaa
ctgcggcgggtcggggtcttgctggattacgatgccggatatgtggctttttatgatgcc
gtcggttcccaacacttacacacctttcacgtctccttcatccagcctgtgtgtcccgtg
tttaatgtatggaataagtgtctgacgatactcactggtctccctatacccgaccatcta
gagggactagaacctggtaactaa
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