Xiphophorus couchianus (Monterrey platyfish): 114141131
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Entry
114141131 CDS
T05908
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xco01009
]
114141131 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114141131 (hdac6)
04131 Membrane trafficking [BR:
xco04131
]
114141131 (hdac6)
03036 Chromosome and associated proteins [BR:
xco03036
]
114141131 (hdac6)
Enzymes [BR:
xco01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
114141131 (hdac6)
Protein phosphatases and associated proteins [BR:
xco01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
114141131 (hdac6)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
114141131 (hdac6)
Membrane trafficking [BR:
xco04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
114141131 (hdac6)
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
114141131 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
114141131
NCBI-ProteinID:
XP_027867374
LinkDB
All DBs
Position
24:complement(5736684..5745585)
Genome browser
AA seq
1064 aa
AA seq
DB search
MASGSDLPGSGVKSVRRSPRLSPQAVGGVSLQEVKRTGRMENSKEEDGLSGRLKTLDLCS
RSAASGTGLVYSQIFTQHQNLWDTSHVESPDRVTAIMLELQRRELLSLCVTVEPREATEE
ELLLAHTKLYVDAMRATRTMTQTELQSLSDRYDSVYLHPESFQVCVTAVGSVLQLVDRVQ
TSDVRNGFAVIRPPGHHAQADQPNGFCVFNNMAVAARYAQKRHAVNRVLIVDWDVHHGQG
IQYQFQEDPSVLYFSIHRYEGGAFWPHLQESDCSFVGSGRAEGRNINLPWNKTGMSDADY
ITAFQQVLLPVAYEFQPQLVLVSAGFDAAAGDPKGEMCVRPQCFHILTHMLMSLAEGRLV
LALEGGYDLQATAEGVAACVTSLLGGACPLLNPPTAPCDSALQSISGTVSALYPHWASLQ
VLAGPSLESPVITAAANHSSPTPASINTCVATTTGLAYDEKMMEHVNLWDRHHPEQPQRI
SKIFSKHQQQGLVARCHRIPARLATEEELAVCHSLQHIEQMKATAEMKPRDLHKLGNEFT
SIFFSNQSFQCAQLAAGSCFNAVDAILSGQLSNGVAIVRPPGHHAERDAPCGFCLFNTAA
LAARYAQKNSHDPQLRVLILDWDVHHGNGTQHMFEDDDSVLYISLHRYDNGTFFPFSEDA
ASDRVGVAKGAGFNVNVAWSGGRMGDSDYLAAFHHIVMPIAAEFNPGLVLVSAGFDAARG
DPLGGYQVTPEGYAHLTHLLMSLAGGRVLIILEGGYNLTSISDSMAMCTSMLLGDAPPSL
ATPFPPPHHCAVATIREVIRHHAPYWRSLRITVPESVQLALPSPKHRGKRSSEGKKSDKR
PLPPAGQEVATMQGMEQLTQGLASLDITQAPPTPQEPPTMEVKGDVEPELENSQSAESMQ
TQNVTMATADSDPKGGEGSGEGAEPTPEGACGWSKPQVSLELTCSTEMGGDTLYVVDPLP
WCPHLDAVKPLPPSGVDVFQPCSDCGSDAENWICLTCYQVCCGRYVNEHMVTHGAVSEHP
VVLSFSDLSVWCYLCESYVHHQVLFEAKNAAHFAKFGEEVPPWC
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccggatcggatcttccgggatccggagtgaaatcagtcaggaggtctccacgc
ctgtcacctcaggctgtgggcggagtcagcctgcaggaggtgaagaggacaggacggatg
gagaatagcaaagaggaagacggtctgagtggacgtctgaaaacgctggatctgtgcagc
aggtctgcagccagcggaaccggactggtttactcccagatcttcacgcaacaccagaac
ctctgggataccagccatgtggagagtccagacagagtgacggccatcatgttggagctg
cagagaagggagctgctgagcctctgtgtcactgtggagcccagagaagctacagaggag
gagctgttgctggctcacacgaagctttatgtggacgccatgagggcgactcggacgatg
acccagacggagctgcagagtctgtctgaccgatacgactctgtctacctccaccctgag
tccttccaggtgtgtgtgacggctgttggttcagtcctccagctggtggatcgggtccag
acctctgacgtcaggaacggattcgctgtcatcagacctccaggtcatcacgctcaggcc
gaccagcccaacggcttctgtgtgttcaacaacatggcggttgcggctcgctacgctcag
aaacgccacgctgtcaacagggttctgatcgtggactgggacgtccatcatggtcagggc
atccagtaccagttccaggaggatcccagtgtgctgtacttcagcatccacaggtatgag
ggcggagccttctggcctcacctgcaggagtcggactgcagctttgtgggcagcgggaga
gctgaagggaggaacatcaacctgccgtggaacaagacggggatgagcgacgctgattac
atcaccgccttccagcaggtgctgctgccggtggcctatgagttccagcctcagctggtt
ctggtctcagctggttttgatgctgcagccggagatccgaagggggagatgtgtgtccgc
cctcagtgtttccacattctgacccacatgttgatgagtttggctgaaggtcggctcgtt
ctcgctctggagggaggctatgaccttcaggcgacagcagagggcgtcgcagcctgcgtc
acatctctgctgggcggggcctgtcctcttctgaacccgcccactgctccctgtgacagc
gccttgcagtccatctctgggaccgtctcagcgctgtacccacactgggcctcgctgcag
gttctggctggacccagtcttgagagtcctgtcatcacagcagcagcgaatcacagcagc
ccaacaccggcttccatcaacacttgtgttgccacgacaacaggtctggcttacgatgag
aagatgatggagcatgtgaacctgtgggacaggcatcaccctgaacagcctcagaggatt
tctaagatcttctccaaacatcagcagcagggattggtcgcccgttgccatcggataccc
gcccgcctggcgacagaggaggagctggccgtgtgtcacagcctgcagcacatcgagcag
atgaaggcgacggcggagatgaaaccccgcgaccttcacaaactgggaaacgagttcacc
tccatcttcttcagcaaccagagcttccagtgcgcccagttggctgctggaagctgcttc
aacgccgtggacgccatccttagtggccagctgagtaacggcgtggccatcgtccgccct
ccgggtcaccacgctgagagagatgctccctgcggtttctgtctcttcaacaccgccgct
ctcgccgctcgctacgcccagaaaaactcccatgatcctcagctgcgagtgctgatcctt
gactgggacgttcaccatggcaacgggacgcagcacatgtttgaagacgacgacagcgtt
ctgtacatctctctccatcgctatgacaacgggacattcttccccttctcagaggacgcc
gcctccgacagggtgggcgtggccaagggagcgggctttaacgtgaacgtagcgtggagt
ggcgggcgaatgggcgactctgattacctggcagcatttcatcacattgtcatgccgatc
gctgccgagtttaaccccggactggttttggtgtcggccggatttgacgcggcccgggga
gatccgctgggcgggtaccaggtgactcctgagggatacgcccacctcacacacctgctg
atgtcactggctggggggcgtgtcctcatcatcctggagggcggttataacctgacgtcc
atctctgactccatggcgatgtgcaccagcatgttgctaggagacgctcccccctcactg
gccacacctttccctcctccccatcactgtgcagtggcaacaatcagggaagtcatccga
catcacgccccctactggcgctccctgaggattaccgttccagagtcggtgcagttggcc
ctcccctccccaaagcatcgtgggaaacgtagttctgaaggcaagaagtcagacaaacgg
ccactgccccctgctggacaggaggttgctacgatgcagggtatggagcagctcactcag
ggattggccagtctagatatcactcaagccccgcccaccccacaggaaccgcccacaatg
gaggtcaaaggtgatgtggagcctgagttggagaacagccaatcagcagagagcatgcag
actcagaatgttaccatggcaacagcagactcagaccccaagggaggagaggggtcaggc
gaaggggcggagcctacgccagagggagcctgtggttggtcgaagcctcaggtgtctctg
gagctgacgtgcagcactgagatgggcggagacactctgtacgtggtggaccctctgccc
tggtgtcctcacctggatgcagttaagcccctccctccctcaggtgttgacgtcttccag
ccgtgcagtgactgcggttctgacgcggagaactggatctgcctcacgtgctatcaggtg
tgctgcggtcgctacgttaatgagcacatggtgactcacggcgccgtgtcagagcaccct
gtggtgctcagcttctctgatttgtccgtttggtgctacctgtgtgagtcctatgtccac
caccaggttctgttcgaagccaagaacgccgctcacttcgccaagtttggagaggaagtt
cctccctggtgctga
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