Xiphophorus couchianus (Monterrey platyfish): 114142136
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Entry
114142136 CDS
T05908
Name
(RefSeq) endoribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114142136
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
114142136
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GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
RuvA_C
Motif
Other DBs
NCBI-GeneID:
114142136
NCBI-ProteinID:
XP_027869043
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All DBs
Position
3:complement(8227553..8246689)
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AA seq
624 aa
AA seq
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MDPVLPSDVFDSDLLETESEELRLKVDFFRKLGYSTAEVKAALRKLGLSTDTNAMLEELV
RNRTTNTSPCFSESDERSADLKDPLLPPSWDVGTCRIMPQLGEQKSADSELRPIVIDGSN
VAMSHSNKEVFSCRGIELAVDFFLDRGHNNITVFVPSWRKELPRADAPITDQHILLELEK
RKIVAFTPSRRVGGKRVVCYDDRFIVKLAHELDGIIVSNDTYRDLQGEKPEWKKCIEERL
LMYSFVNDKFMPPDDPLGRHGPNLDNFLRKKPLPVEQKKLPCPYDKKCTYGIKCKYYHPE
RANHSYLSLADELREKAQISFVKEEKKARSSVNYPQSEPEPSHPRHTHLPWDQQNSSVLG
HISENKLLLWENFRKSPNQMLSSTNGGKCQEEYPASHYIPNHYPNMSREYFDSGFGSTES
YYSDLPPSRSSTHRLGSQHQSTLPRLQHSPVHMENCNTSYCGKCCSYPQQQHHSNIDCCS
LPIYDTYNPNMFPHGVHQQRSLPAHFHNTATPQLHHNYWSDPFQGVPPARSSCPTPSLAY
PSHCHSSCCSYENHQYQTWGQQQQPPLPPAPAAFKQNRSEMRKKLHAIFNPNQVDRVMEM
FPHLMDAEVLAAEILNMKAQGMIF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggacccggtacttcccagtgatgtttttgactcagatctactggagacagaaagtgag
gaactccggcttaaagtggacttcttcagaaaactggggtactccacagcagaggtgaaa
gccgctctgagaaagctgggcctaagcacagacaccaacgcaatgctcgaggagcttgtg
aggaacagaaccaccaacacgtcaccatgtttttccgagagcgatgagaggagcgcagat
ctgaaagacccgctgctgcctcccagttgggacgttggaacctgcagaatcatgccacaa
ctcggggagcaaaaaagtgcagattcggagctgagacctattgttattgacggcagcaat
gttgctatgagtcacagcaacaaggaagtgttctcatgcaggggcatagagttggcagtg
gatttcttcctggacagaggtcataataacatcactgtgtttgttccgtcttggcgcaaa
gagttgccccgagctgatgcccctataacagatcaacatattctgttggagcttgaaaaa
cggaaaatagtggccttcaccccttcccgccgggttggtggcaagcgagtggtttgttat
gatgaccgcttcattgtcaaactggcgcatgagttagatggcataattgtgtccaacgac
acctaccgtgatcttcaaggagaaaaacctgagtggaagaaatgcattgaggagaggctc
ctcatgtactcatttgtgaatgacaagttcatgcctccagatgatcctttaggtcgacat
ggacctaacctcgacaattttctccggaaaaagcccctgcctgttgagcagaaaaaactg
ccctgtccatatgataaaaagtgcacttatggcatcaagtgcaagtactaccatcctgag
cgggcaaaccactcctatctgtccttggctgatgaactgagagagaaagcacaaatttct
tttgtaaaagaagaaaaaaaggcaagatcatctgtcaactatcctcaatctgaacctgag
ccttctcatcctcgacacacacatctcccttgggatcagcagaattcctcagttcttggt
cacattagtgaaaataaactactgctctgggaaaacttcagaaaaagccccaaccaaatg
ctgtcttcaacaaatggaggaaagtgtcaagaagaatatcccgcgtcacactacataccg
aatcattatcccaatatgtctcgggaatattttgattccggttttggttcgactgagagc
tactactccgacttgccaccatcccgcagcagcacccacagacttggttctcagcatcaa
agcaccctccccaggctccaacattccccagttcacatggagaactgtaataccagttat
tgtggcaaatgctgttcctatcctcagcagcagcatcacagcaacatcgactgctgcagt
ctacccatctatgacacctacaatccaaatatgttcccacatggtgtacatcagcaacgg
agcctgcctgcccatttccataacactgcaaccccccaactccatcataattactggtca
gatccctttcagggtgtgccgccagccagatcctcatgccccaccccctccttggcttat
ccttcacattgccacagctcctgttgctcctatgagaatcaccagtaccaaacctggggc
cagcaacaacaaccgccgctgcctccggctcctgctgcattcaagcaaaatagatcagaa
atgcgcaagaaactgcatgccatcttcaacccaaaccaagtggatagggtcatggagatg
ttcccgcacctgatggatgctgaagttttggctgcagagatactgaacatgaaagctcag
gggatgatattctga
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