Xiphophorus couchianus (Monterrey platyfish): 114142274
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Entry
114142274 CDS
T05908
Name
(RefSeq) collagen alpha-1(XIV) chain-like isoform X1
KO
K08133
collagen type XIV alpha
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xco00535
]
114142274
Proteoglycans [BR:
xco00535
]
Extracellular matrix (ECM) proteoglycans
Others
114142274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
FN3_Tor_3rd
VWA_3
Motif
Other DBs
NCBI-GeneID:
114142274
NCBI-ProteinID:
XP_027869271
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All DBs
Position
3:20184013..20304235
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AA seq
1791 aa
AA seq
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MLRMLLMGEVRWCFLAPLVLLVFVSCDPSKAQGQVPAPRRLRFKVHSSRKLLVSWREPRG
EVDSYLFLYNSLPGGQQREIIVSKSDPKVLITDYNPSKDYMISVIAIRGREQSRPLRGRF
KAKPAARGDSDKEDESELQRLTDSDGPPDDANEISGADQFVCHTAAIADIVILVDGSWSI
GRINFKLVRTFLENLVNAFDIGIDKTRIGLAQYSGDPRIEWHLNTYSTKEAVIDAVKNLP
YKGGNTLTGLALNFVSDYCFKPESGSRVGLPKIGILITDGKSQDDVVPPAESLRKAGVEL
FAIGVKNADENELRSIASEPHHTHVYNVADFNIMSSIVEGLTKTVCEQVELQDKDIKQKF
TPEKMEMPLNLETSEVTAQSFRVSWSPPAGNVEMYRVVYSPAQGGEPQEAVVAGSETSVM
LKHLSSLTEYQLAVFAVYTDEASEALRGSETTLALPSVASLQLFDATHSTMQARWSHVEG
VSGYMLLYAPITDDGDLNNKCCPQINVADGVTEVELVGLTPDTAYTVTVYAMYGEEASDP
KTNQETTLPLSPPRNLQFSDITHNSAHISWDSPPDGVKGYRIMWVMTDGLVTKEAKVGPV
NSYDLSELASLMEYSVAIFALYNEGQSEPLTDGFTTTPVPGPLNLRSSDVYTGSFKVSWD
HSATDIALYRLSWAPFSGGDTKEVILSGSENRYTLDGLSPSTKYEVLLTAIFEDESESDT
VSVIETTLAITTTIHTTTTVTRKAVKNLYLSDETTQSLEASWELEDTDVESYRISYTDLS
ANQEEETISVGGGQKSTLLQSLLPDTQYKVTVTPVYLDGQDGISASALGSTLPLLSPENL
RVSEESYNRFRVSWDLPQSPTEGYRIAYRPIHVQSPVLETTVDEDVNSILLLNLLSGTDY
SVQVTAFYPGGPSEPQLINAKTLFLGVSGLSTYQVRSNSMCVQWQPLLHATSYRVSIQSV
LNGQRQELNLGGSASRHCFYDLTPSSQYQISIYTQMQEMEGPSVSITDMTLSEPTPVPTE
PPSTEPTPTIPPAKEVCKEAKADLAFLVDGSWSIGDDNFMKITRFLYSTMGSLDLIGPDG
TQVAVAQFSDDARTEFLLSSHGNKEALLEAIQKIRYKGGNTKTGRAIKHVKESIFTPEAG
ARRGVPKVLVVLTDGRSQDDVNKVSKEMQMEGYIIFAIGFADADYGELVNIASKPSDRHV
FFVDDLDAVKKIEEQLITSVCEAATATCPSVLMSGNTLAGFKMMEKFGLVEKEYSTLPGV
SLEPGSFNSFPCYRLHRDALVLQPTKYLHPEGLPSDYTISMMLRLLPETPQEPFALWEIL
NKDNEPMVGLILDSSGKTLTFFNHDYRGDFQTVTFEGPEIKKVFHGSFHKLHVTISKTSV
KVVLDCSVVGEKSIRAAGNITTDGVEVLGKMVRSRAKRDSSAPFQLQMFDIICSTSWASR
DKCCELPALRVEEQCPPLPHACTCSQESKGPPGPSGPPGGPGIRGARGNRGEPGVTGPQG
PMGETGPSGPPGPPGPQGPSGLSIQGPPGIRGEKGERGDAGTGGPMGVPGSPGSPGRDGP
PGARGQPGNSGPQGRQGPSGPIGSPGTPGVPGPNGPAGPLGEQGLPGLAGTKGDKGERGD
VQSQAAVRAIARQVCEQIIQSHFSRYNSILNQIPQQFSGSVRTVTGPPGEPGRRGPPGPQ
GEQGTPGRPGFPGTNGQSGQPGERGLPGEKGERGSPGVGSQGPRGPPGAPGLPGEGRAGS
QGPPGQPGSPGTAGRPGNPGATGPTGPPGYCDQNSCLGYNVGVQQDYRNDY
NT seq
5376 nt
NT seq
+upstream
nt +downstream
nt
atgttgaggatgttgttgatgggagaggtcaggtggtgttttctggccccgctggtttta
cttgtctttgtttcctgtgaccccagtaaggctcagggtcaagttccagctccgaggagg
ctgcgtttcaaagtgcacagttcccgcaaactcctagtttcatggagggagcccagagga
gaagtcgacagctatttatttctctacaacagcttaccaggtggtcagcaaagggagatc
attgtgtctaaatctgacccaaaggttttaataacagactacaatccgtctaaggactac
atgattagtgtcattgctattagaggcagagagcagagcagaccacttcgggggagattt
aaagctaaaccagctgctcgaggtgatagtgataaagaagatgagtctgagctgcagaga
ctgactgattcagatggacctcctgacgatgccaacgagatctctggagctgatcagttt
gtgtgccacaccgcagccattgcagatattgtgatcctggtagacggctcatggagtata
ggccggatcaacttcaagctggtccgtacatttttggaaaacctggtcaacgcttttgac
attggcattgataagaccaggataggcctggcccagtacagcggagaccccaggatagaa
tggcatctgaatacttactctacgaaagaagctgtcattgatgcagtgaagaacttaccg
tataaaggagggaacactctcacagggcttgcattgaattttgtctcagactactgtttc
aagcctgaatctggctcacgagttggtttaccaaagatagggattctcatcacagatgga
aaatcccaggacgacgttgtacccccagcagagagcctgcgaaaggctggtgttgagctg
tttgctattggtgtaaagaatgctgatgagaacgagctgcggtccatcgcctcagagccg
catcacactcacgtctacaatgtagctgacttcaacattatgagttcgatagtcgaggga
ctgacaaagaccgtgtgtgaacaagtggagctgcaagacaaagacatcaagcagaaattt
acgccagagaaaatggaaatgccgctaaacctggaaacctcagaggtcacagctcagagc
tttcgggtctcatggagtccgccagctggaaacgtagagatgtatagagtggtttacagt
ccggctcagggaggagaaccacaggaggctgtcgtggctggcagtgagacttcagtgatg
ttaaagcatctcagctctctcactgagtaccagctcgctgtgtttgctgtgtacacggac
gaggcaagtgaagctctgagaggatcagaaactaccttggctctcccgtcagtcgctagc
ctccagctgttcgacgcgactcacagcacaatgcaggccaggtggagccatgtggaagga
gtctcaggttacatgctgctgtatgctcctattacagatgatggagatctaaacaacaag
tgttgccctcagattaatgtagctgacggagtaacagaggtggagctggttggcttgacg
cctgacactgcatacaccgtcactgtttatgctatgtatggagaagaagccagtgacccc
aaaacaaatcaggaaacaacattacctctgagccctcccaggaatctccagttttcagac
atcactcataactccgcccacatcagctgggattcaccgcctgatggggtgaaaggttac
cgcatcatgtgggtcatgacagacggattggtcacaaaggaggcgaaggtgggcccagtg
aattcgtatgacctcagtgagctggcgtccctcatggagtactcagtggccatctttgct
ttgtacaatgagggccagtcagagccactcactgatggcttcacaaccactccggttcct
ggtccgctgaatctgcgctccagtgatgtctacactggcagctttaaagtcagctgggat
cactcagccacagacattgctctctacagactctcctgggcaccattctctggtggtgac
acaaaggaggtgattttgagtggaagtgagaacagatacactctcgacggtctcagtccc
tccactaaatatgaagtcctgttaacggccatatttgaagatgaatctgagagcgacacg
gtctctgtcatagaaaccacattggctataacaacaacgattcataccacaaccacagtg
acacgtaaggctgtgaaaaacctttacctgagtgatgagaccacccaaagcttagaggca
tcctgggagctggaagacactgatgtagagagttacaggatttcctacactgacctcagt
gcaaaccaagaggaggaaactatatccgttggtggcggtcagaaaagtacattgctccag
tctttactaccagacacgcagtacaaagtgacggtcacaccagtgtaccttgatggacaa
gatggcatcagtgcttctgctttgggttctacattgcctctcttgtctcctgaaaatcta
cgtgtgtcagaggagtcgtacaaccgcttcagggtctcctgggatctgcctcagtctccg
acagaaggttacagaattgcctaccggcccattcatgttcaaagtccagttttggagacg
acagtagacgaagatgtgaactcaattctcctcctgaatcttttaagcgggacggattac
agtgtccaagtgacggctttctacccaggaggaccaagtgaaccacagctcattaatgcg
aagacattgttccttggtgtttctggcttgtcaacctaccaggtgcgctccaacagcatg
tgtgttcagtggcagcctcttctgcacgccacatcttaccgggtctccatacagtctgta
ctcaatggtcagagacaagaactaaacctgggaggttcagcttcgcgccactgtttctat
gacctcactcccagtagccagtaccagatcagtatttatacacaaatgcaagaaatggaa
ggaccgtctgtatccattactgacatgacactttcagagccgactccagttccgactgaa
cctcccagcacagagcccactcccaccatcccgcctgctaaagaagtgtgcaaggaagcc
aaggctgacctggcgtttttggttgacggctcttggtccattggagacgacaacttcatg
aagatcacacgttttctctacagcactatgggttcactggatctgattggaccagatggc
acccaggtggctgtcgctcagttcagcgacgacgcgcggacagaatttctgctgagttcc
cacggtaacaaggaagcgctgctggaagccattcagaagatcagatacaagggcgggaac
accaagacaggtcgagccatcaagcatgtgaaggaatccatcttcacaccggaggccgga
gccaggaggggtgttcccaaggtcctggttgttctgaccgatggacgttcgcaggatgat
gtcaacaaagtgtcaaaggagatgcaaatggagggctacatcatctttgcaatcggcttt
gcggatgcagactatggagaactggtgaatattgccagcaagcccagcgacagacacgtc
tttttcgtggatgatctggatgctgtgaagaaaatagaggagcagcttattacctccgtc
tgtgaggcagccactgccacttgtccatctgttctgatgagcggcaacacactggcaggt
ttcaaaatgatggagaagtttggcctggtggagaaggagtacagcaccctacctggagtt
tctctggagcctggttcgtttaacagcttcccctgctacaggttacaccgcgacgccctg
gtgttacagcccaccaagtaccttcaccctgaaggtttgccatctgactacaccatttct
atgatgctccgtttgctccctgagaccccgcaggagccctttgctttgtgggaaatcctc
aacaaagacaatgagccgatggtgggcctaatcctcgacagctctgggaagactctgaca
ttcttcaaccacgactacagaggagacttccagactgtcacattcgaaggaccagaaatc
aaaaaggtttttcacggcagcttccacaagctccatgtaaccatcagcaagacatcggtg
aaggtggtgttagactgctctgtggtcggggagaagtccatcagagcggctgggaatatc
accacagacggagtcgaggtcctggggaaaatggttcggtccagagccaaaagagacagc
tctgctccgtttcagctgcagatgtttgacatcatctgcagcacgtcctgggccagcaga
gataagtgctgtgagctgccagctttgagagtggaggagcagtgtcctcccctgccccat
gcctgtacctgttctcaggagagcaaaggacctccaggaccatctgggccccctggtgga
cccggaataaggggagccagaggaaacaggggggaaccaggagtgacgggaccacaggga
cctatgggggaaaccggcccttctggacctccaggaccacctggtcctcagggacccagt
ggactctccattcagggacccccaggcattcgtggagaaaaaggagagagaggtgatgct
ggcacaggaggaccaatgggcgttcctggaagccctggctctccaggcagagatggtcct
ccaggagcaaggggtcagccgggtaacagcggacctcagggaagacaaggaccttctgga
cccatcggatctccaggaactcctggagtcccagggcccaatggaccagcggggccttta
ggtgaacaaggactgcctggtcttgctggtaccaaaggcgataaaggagaaagaggtgat
gtgcagtcccaagcagcagtgagagcaattgcacggcaagtctgtgaacagattatccaa
agtcatttctctcgctataattccatcttgaaccagatccctcaacagttttcaggatcg
gtccgaactgtgacggggccaccgggcgagccgggcaggagaggccctcctgggccccag
ggagagcaaggcacccctggcagacccggtttccccggtactaatggtcagagcggacaa
ccgggtgaaagaggtttgccaggtgaaaagggagagagggggagtccaggcgttgggagt
cagggacctcgaggaccacccggtgcacccggcctgccaggcgaaggtcgggcaggcagc
cagggcccacctggtcagcccggaagcccgggtacggctggcaggcctggaaatccagga
gctacgggaccaactggaccaccaggatactgtgaccagaactcgtgtctgggatacaat
gttggagttcaacaggattacaggaatgattactga
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integrated database retrieval system
