Xiphophorus couchianus (Monterrey platyfish): 114142313
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Entry
114142313 CDS
T05908
Symbol
rad54b
Name
(RefSeq) DNA repair and recombination protein RAD54B isoform X1
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114142313 (rad54b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xco03400
]
114142313 (rad54b)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
114142313 (rad54b)
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Nodulin_C
Motif
Other DBs
NCBI-GeneID:
114142313
NCBI-ProteinID:
XP_027869334
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All DBs
Position
3:16033539..16051229
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AA seq
936 aa
AA seq
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MRRSGAPSQLLGNAVKKPRFVPPGASASCPVEESKPLAPKRGLGNALAKVQRSLSAAVVN
KSTCSVPGQTGQTASGLSKVLARVLTATESKENEDEAKYEDCTEDVNVSAGVDGGPQWTH
ASPQTPQPPADSPHVSGAAGPDRVRYFSVVWCKASKKKHKRWEGDAVLVARGRTVVLKDM
EGKDIGKGSGYKVSELASLSEGETLMIGGKEIEVMGIVSAEDFAKGRCFQEVQTDQEELH
TKAAPPPPRRFNPKPFCPPTMLGRAGHPENKPQAEQTSKPRHDPLAPGALVMPRPSANHQ
WLHNKSGLPVVDVVVDPHLTMHLRPHQREGILFLYECVMGMRAAGRHGAILADEMGLGKT
LQSVALCWTVLKQGPYGGKPVAKRVLVVTPGSLVQNWRAEFTKWLGRERISAFTVDQDHR
IEEFLSSPLHNVLVISYEMLLRCLDPIQKVEFGLIICDEGHRLKNSSIKTSSAVSSLSCH
RRVILTGTPVQNDLQEFYAIIEFVNPGILGSTTAYRKVYEEPILHSRQPSCSEDERVLGE
ERAAELSRLTGMFILRRTQEIINRYLPPRLDWTLFCMPSPLQQKLYKHLLCHRVFRACLQ
GFTQGGAHLACITALKKLCNHPGLLHDTVKERTERGSVESSLYEGLADLFPESYCSAGFD
TADSGKLLVLSDLLSAIRQLSPSDRVVLVSNYTQTLDLLQDLCVCSGFTFCRLDGQTPTS
QRQRLVDAFNSPYSQSFLFLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRD
GQKKTVHIYRLLTAGTIEERIFQRQVSKQGLSGTVVDLGKAAEHTSFSTSELRDLFSLTD
TPCLTHDLLSCSCSMDGSVNDVEVEEVELVSDRPCQLGRQGDRRGAAQKHLSMSELMRWR
HFSGDTHTFSDPYLDHARSHITFAFQTTISHTPSEQ
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgctcaggagctcccagtcagcttttgggcaatgctgtgaaaaaacctcgcttt
gtgccaccaggagcatctgcttcatgtcctgtggaagaatcaaagcctctagcccctaaa
cgtggcttgggaaatgctctggctaaagtccagagaagtctttcagcagcggttgtgaat
aaatcaacctgcagtgttcccggtcaaacaggccagactgcttcaggtttgtccaaggtg
ctggcccgtgttctcactgcaacagagagtaaagaaaatgaggacgaggcaaaatatgaa
gactgtacagaggacgtaaatgtttctgcaggagtagatggaggcccccagtggacccac
gcgtctcctcaaacccctcagcctcctgcagattcacctcatgtctctggagctgcaggc
ccagacagagtccgatacttcagtgtggtttggtgtaaagccagcaaaaagaaacacaag
cgctgggagggagacgctgtgctggttgccagagggcgaacagtcgtactcaaagacatg
gaggggaaggatattggaaagggtagtggctacaaggtgtcagagctggcctcgctgtct
gagggagagacgctgatgataggagggaaggagatagaggtgatgggcatcgtctctgct
gaggactttgccaaaggtcgttgtttccaggaggttcaaacagatcaagaggaactgcac
actaaggctgctccacctcctcctcgccgcttcaaccccaaacctttctgccccccaaca
atgttgggcagagcaggacatccagaaaataaaccacaagcggagcaaaccagcaaacct
cgtcatgacccgctagctccaggtgccttagtgatgcctcgcccctctgccaaccaccag
tggcttcataacaagtcgggccttcctgtggtcgacgtcgtcgttgacccacacctgacc
atgcacctgcgaccccaccagagggagggcatcctcttcctctatgagtgtgttatgggc
atgagagctgcaggtcgtcatggcgccatcctggcggatgagatggggcttgggaagacg
ctgcagagcgtggcgctctgctggacggtgcttaagcagggaccttacggcgggaaacca
gtcgcaaagcgtgtccttgtggtcactcctggcagcctcgtgcagaactggagagcagag
ttcaccaagtggctcggccgggaacggatcagtgccttcactgtggatcaggaccacagg
atagaggagtttttatcctcccctctccacaacgttctggtgatcagctatgagatgctg
ctgcggtgcctggacccgatccagaaagtggagtttggtctcataatttgcgatgagggt
cacagactgaagaacagcagcatcaaaacgtcctccgccgtcagcagcctcagctgtcat
cgcagagttatactcacagggaccccagtccaaaatgacctgcaggagttctacgccatc
atagagtttgtgaacccgggaattcttggttcgaccactgcttatagaaaagtttatgaa
gaaccaattctacactccagacagccatcctgctctgaggacgaaagagttttgggggaa
gagcgcgccgctgaactctctcgtctcaccggcatgttcatcttgcggcggacgcaggag
attatcaaccgctacttgccgcctcgtctggactggaccttgttctgcatgccgtcgccg
ctgcagcagaagctgtacaaacacctgctctgccaccgcgtcttcagagcctgcctgcag
ggcttcacacaaggcggcgcacacctggcctgcatcactgcgctgaagaagctctgcaac
catcctggcttgctccacgacactgtcaaggagagaacagagcgcggatctgtggagagc
tctttgtacgagggacttgcagatctcttcccagaatcctattgttcagcaggattcgac
accgctgactccgggaaacttttagttctgtccgacctgctgagtgccatcaggcagctc
agcccttcagaccgggtggtcctggtgtcaaactacacccagactttggacttgcttcag
gacctgtgtgtttgttccggcttcacgttctgccggctcgacggtcagacgcccacgagc
cagcggcagcggctggtcgacgccttcaacagcccctactctcagagcttcctgtttctg
ctgagctccaaagcaggcggtgtgggactgaatctgatcggagcgtcgcacctggtgctg
tacgacatcgactggaaccccgccaatgacattcaggccatggctcgggtatggagagat
ggacagaaaaagacggtgcacatttaccgtctcctcactgcaggcactattgaggagcgt
atatttcagagacaggtgtccaaacaggggctgtccgggactgtggttgacttggggaaa
gcagcagaacacacaagcttctccaccagcgagctgcgagatcttttcagcctgacggac
acgccgtgtttgacccatgacctgctgagctgcagctgcagcatggacggctcggtcaac
gacgtggaggtggaggaggtggagcttgtttctgacaggccgtgccagctcggtcgtcag
ggcgaccgcaggggggcggcacagaagcatctcagcatgtcggagctcatgcggtggaga
cacttctccggtgacacacacaccttctcagacccttaccttgatcatgcacgaagccac
atcaccttcgccttccagaccaccatctcccacacacccagcgaacagtga
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