Xiphophorus couchianus (Monterrey platyfish): 114142480
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Entry
114142480 CDS
T05908
Name
(RefSeq) aggrecan core protein-like isoform X1
KO
K06792
aggrecan 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xco00535
]
114142480
00536 Glycosaminoglycan binding proteins [BR:
xco00536
]
114142480
04091 Lectins [BR:
xco04091
]
114142480
Proteoglycans [BR:
xco00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
114142480
Glycosaminoglycan binding proteins [BR:
xco00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
114142480
Lectins [BR:
xco04091
]
C-Type lectins
Lecticans
114142480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
EGF
hEGF
UL45
Motif
Other DBs
NCBI-GeneID:
114142480
NCBI-ProteinID:
XP_027869580
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Position
4:complement(2598430..2615944)
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AA seq
1408 aa
AA seq
DB search
MLKWTVLLSLCLSISSATFDYLYEQRSFMDPEDILTVSIPLEGLQRPLLGETLLLPCYFQ
DHSVEDSGSPPVTPLSHRIKWSYVTKEKATTILVALEGQVRISESYLDRVQLQSYPQTPT
DASIKISELRSSDTGVYRCEVQIGIEDAYDFVHVLVQGIVFHYRPFMGRYTLTFEKAKAA
CAQNSAVIATPEQLQAAFEDSFHQCDAGWLSDQTVRYPIHKSRMNCYGDKEELPGVRTYG
MRDLNETYDVYCFADRMPGRVFHSTSAGKFIFSEAALACSYQGARLATTGQLYLAWQGGM
DICNAGWLRDGSVRYPINIRRPQCGGGLLGVRTVYLHTNQTGYPLPDSRYDAFCYTDSPD
DEGSGTDEGSGAVTVTTVTKSPEVFFSKMTTESEAVGEVETQQPFDLSYTNSENPNKLPL
PLPTNFTDFTFDLIEAVTNQPAVQREPSKTSVISPAGVVFHYRSPTGRYALTFVEAQLAC
QGVRGSMATPQQLQRAYEDGYHQCDAGWLLDQTVRYPIVFPREKCAGDLGDQPGVRTYGL
RPAEERYDVYCYTEEIKGEVFHVGSAEGFTYDEAASACENHSAVLASTGELYAAWKLGLD
KCRAGWLLDRSVRYSVNSPRPGCGGEKSGVHTLYSPPNQTHYPEPDARFDAYCIRDIQKA
LPNQTSDTDLLRPDDFFIVPPIPMEISSSGSGSADFDSGSAGDNSGVQFNSGDQSGSGDR
VISGDQSGSGDQVTSGYISGSGGKIPFGDQAGYTETVVTSGGSGLASASGSGSGPRVVSS
GPFIAAVEGSTLGEPQEAGEGSTDVLIFPLSAADSGKLSGSGVMSGSGSGFDAVHLTGTG
LILDQELSGFSGFLSGSSSGSGLSEDISGSGDAPILIIDDKLIDAKKEYNLGGGPLDFSG
SGNFYKSGILSGSTSGSDSETLTGVTFMGSGFTKLMGSPSGEQEEASGGLFYSSGPESVG
QISGFRISSCSFDSRARGSGSGFSKSEASTTKGEEEGSVIFFTQGLMTEIPEDDKVPLQL
GENSVEYSGETSGNNGFYSGDGNKDLSEDNTFMSGVLSSGDSSDPLVVVLPAPSVDPALT
EPTIRTDEDVNGTELTHNSRVYVSPGPAVAPAGLSAPPAEIKPAFVQTPAVLEASNPCEP
NPCGNASCTVEEGVAFCFEAEVCHPNPCTNGATCVESADSFKCLCLPTYGGERCEIEEQR
CEDGWTKFQGNCYLPVSDRAEWLEAEQRCRHLNAHLVSIITPEEQQFVSVNAQDYQWIGL
NDKTVQNDFQWTDGSPLQYENWKLNQPDNYLNLAEDCVVLIWHENGKWDDVPCSYHLPFT
CKKGPVFCGAPPVVKNTRMFGNRRSEYPVNSIIRYQCNPGFRQRHLPVVRCQADGNWEKP
KVDCTDVKARNRIKLRSSRNSPVSEKNK
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgttaaagtggaccgtgctcctgtctttatgtttaagtatctcctctgcaacatttgac
tatctttatgagcagagatccttcatggatccagaggacattctgactgtgagcattcct
ctggagggcttacagcgccctctgctgggagaaactctgctactgccgtgctactttcag
gaccactctgttgaagattctggttctccccccgtcactcccctttcccaccgtatcaaa
tggagctacgtcacaaaggaaaaggcgactaccatccttgtggctttggaaggacaggtc
cgcatcagcgaaagttatctggacagagttcagctgcagagctacccccagactccaaca
gatgccagcatcaaaatatcggagctacgttccagtgacacaggagtgtatcgctgtgaa
gttcagattggcattgaggatgcctatgactttgtgcatgtccttgttcaaggtatcgtg
ttccactaccggccctttatgggtcgctacactttgacttttgagaaagcgaaggcagca
tgtgcccagaacagtgcagttattgctactccagagcagcttcaagcagcattcgaagat
agtttccaccagtgcgacgcaggctggttgtctgatcaaacagtgcggtacccaatccac
aagtctcgcatgaactgctatggcgacaaagaggaactccctggggtcaggacgtatggc
atgagagatctcaatgagacatatgatgtttactgttttgcagataggatgccaggcaga
gtttttcacagcacctctgcagggaagttcatcttctctgaggctgcgctggcgtgctcc
taccaaggagctcggctagccaccacaggtcagctgtaccttgcatggcaggggggtatg
gacatctgcaatgccggctggctgagagatgggagtgtccgctaccccatcaatattcga
cggccacaatgcggagggggtctgctaggggtgcgaacagtttatctccacacaaaccaa
acaggatacccacttcctgattctcgctatgatgccttctgttacacagattcccctgat
gatgagggttcaggcacagatgaggggagtggtgctgtgactgttaccacagtgacgaag
agtccagaggtgttcttcagcaagatgaccacagagagcgaagcagttggagaggtggag
acccagcagccatttgatctgagctacaccaacagcgagaaccccaacaagctgccactt
cctctgccaacaaacttcacagatttcacctttgaccttattgaggccgtcaccaaccag
ccggctgtacaaagggagcccagcaaaacctctgtcatctctccagcaggcgtggtcttc
cattaccgctcacccactggccgttatgctctcacattcgtcgaggctcagttggcctgc
cagggtgtcagaggctccatggccacaccacagcagctgcagcgagcatacgaggacgga
taccatcaatgtgatgcaggttggcttctggaccagactgtgaggtatcctatcgtgttt
cctcgagaaaaatgtgctggagatcttggagatcaacctggagttcggacgtatggcctc
agaccagcagaggagagatacgatgtttactgctacaccgaggagatcaaaggagaggtt
tttcatgtgggatctgctgagggtttcacctacgacgaggctgcttctgcctgtgaaaac
cacagtgcggttctggcctccactggagagctctatgcagcctggaaactgggcttggac
aagtgccgagcaggctggctactggaccgcagcgttcgctactccgtcaacagcccccgt
cctgggtgtggaggagagaaatcaggggtgcacactttgtactctcctccaaaccaaaca
cattaccctgaacctgatgccagatttgatgcatactgtataagagacatccaaaaggct
ctacctaaccagacatcggatactgacttattaaggcctgatgatttcttcatcgttcct
cccatccccatggagatttcaagttctggctctggttcagcagactttgattcaggctct
gcaggagataattctggagtacaatttaactctggagatcagtctggttctggagaccgg
gttatctctggagatcagtctggttctggagaccaggttacctctggatatatatctggt
tctggaggcaaaatcccctttggagaccaagctgggtatacagagactgtggtgaccagt
ggaggatctggtttggccagtgcatctggttctgggtcaggacccagagttgtttcctct
ggacccttcattgcagcagtagagggctcaacgttaggagaacctcaagaggctggagaa
ggaagcacagacgttcttatattccctttgtctgcagctgattctgggaagctcagtgga
agtggagttatgtccgggtctggatctggatttgatgctgtacatctcactggcacgggt
cttatcttggaccaagagttgtcaggttttagtggttttctatctggatcttcatctgga
agtggactatctgaagacatttctggaagtggagatgctccaatcttaataatagatgac
aaactaattgacgcaaagaaggaatacaaccttggtggaggtccgttagatttcagtggt
tctggaaacttttataaatctgggattctcagtgggtcaacctctggaagtgactccgag
actcttactggtgtgacttttatgggttcaggtttcactaaacttatggggtcaccttct
ggagaacaagaggaagcttctgggggtttattctacagctctggaccagaaagtgtgggt
cagatatctggatttagaatctcaagttgcagttttgattctagagctagaggttctgga
tctggtttctctaaatctgaagcatcaacaaccaaaggcgaggaagagggcagtgttata
tttttcactcagggtctaatgacagaaatacctgaagatgacaaggtgcctcttcagctg
ggagaaaactcagtggagtacagtggagaaacaagtggcaacaatggtttctactccggt
gatggaaacaaggacttatctgaggataacaccttcatgtcaggggttttgtcttctgga
gattcttctgatccactggtggtggtcctacctgctccatcagttgacccagcactaaca
gaacccaccataagaacagatgaagatgttaatggaactgaactgacacacaactccaga
gtttatgtttcgccaggtccagcagttgcccctgcaggattatcagctcctcctgcagaa
atcaaaccagcttttgtacaaacaccagctgtcctagaagcttccaacccatgtgaacca
aatccttgtggcaatgcttcatgcacagtagaggaaggggttgctttctgctttgaggca
gaagtgtgccatcccaacccttgtaccaacggagccacctgtgtggagagtgcagactct
ttcaaatgcttatgcctgcccacctacggaggggaacgctgtgagattgaggagcagcga
tgtgaagacggctggacgaagtttcagggaaactgctacctgcccgtctctgacagggcg
gagtggctggaggcggagcaacgctgtcggcacctgaacgctcacctggtcagcatcatc
acaccagaggagcagcagtttgtcagcgttaatgcgcaggactaccagtggatcggcctg
aacgacaaaacggtgcagaacgatttccagtggacggacggctctccactgcaatatgag
aactggaagctgaaccagccagacaattacctcaacttagcagaggactgcgtggttttg
atctggcatgagaacggaaagtgggacgacgttccctgcagctaccacctgccgttcacc
tgcaagaagggaccagtgttttgcggcgctccgcctgtggtgaaaaacacacggatgttt
ggaaaccggaggtcggagtatccggtcaactccatcatccgttatcagtgcaacccagga
tttagacagcgccatctacctgtggtccggtgccaagctgacgggaactgggagaaaccc
aaagtggactgcacagatgtaaaagccaggaacagaataaaactcaggagcagcaggaat
tcaccagtgagcgaaaaaaacaaataa
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