Xiphophorus couchianus (Monterrey platyfish): 114142827
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Entry
114142827 CDS
T05908
Name
(RefSeq) transcriptional repressor CTCF-like
KO
K23195
transcriptional repressor CTCF
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xco03000
]
114142827
03036 Chromosome and associated proteins [BR:
xco03036
]
114142827
Transcription factors [BR:
xco03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
114142827
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
114142827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-C2H2_REST
Zf-C2H2_ZNF451_C
Zf-C2H2_ZNF451
zf-met
Actin_micro
LIM
zf-C2HE
zf-C2H2_6
zf-C2H2_15
DTHCT
zf-WIZ
C2HC_ASCIZ
Motif
Other DBs
NCBI-GeneID:
114142827
NCBI-ProteinID:
XP_027870110
LinkDB
All DBs
Position
4:16080832..16088370
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AA seq
753 aa
AA seq
DB search
MEGEVVSMESAQAAALGADGKVLPEGGEALIQAAQGEVAGDMNMMVMDALDPTLLQMKTE
VLEGGGTVTVTGGDEGQIITLQVVNMEEQAGAALGLGQLQLVQVPVTTTTVEGLQATFVE
ASGANKDAEPVICHTLPLPEGFQVVKVGANGEVETVEQEELQAAHDELQATQEEEEEDDE
VVEPEAAVPQQEDPEWSKDPDYQPIAAIRKGKKGKKSRLRYAEGDRDMDVSVYDFEEEQQ
EGLLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERP
HKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCTDCDMAFVTSGELVRHRRYKHTHEKPFKC
SMCDYSSVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICH
ARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSFIETGKKCRYCD
AVFHERYALIQHQKTHKNEKRFKCDQCDYCCRQERHMIMHKRTHTGEKPFACSQCEKTFR
QKQLLDMHFKRYHDPNFVPTAFVCSKCSKTFTRRNTMLRHAENCMGEAGGDENGDPSPKK
GRRGRKRKMQSRRDDDDDDEDNTEGELDEVEDEEDEMLDEIEVEQAEPVVPIPAPVEPPV
KRKRGRPPKNKPDPAAIIRVEDEVTGEVDDIIVKKEVGAEQEEGTMEEVVVGGVKSTIQL
EELSQVEGAEVQMSEAPPNGDLTPEMILSMMDR
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgaggttgtttccatggagtcggctcaggccgctgccctgggcgctgacgga
aaggtcctaccggagggcggagaagctctgatacaagcagcgcagggagaagtggctggt
gacatgaacatgatggtgatggacgcgctggatcccactctgctgcagatgaaaacagaa
gtgttggagggaggcggcacggtgacggttaccgggggagacgagggtcagatcatcaca
cttcaggtggtgaatatggaggagcaggccggtgccgcgttaggtctcggtcagcttcag
ctggtgcaagtcccggtcacaacaacaactgtagaggggctccaggccacttttgttgag
gcatcaggagctaacaaggatgcagaacctgttatctgccacacccttcctttgcctgag
ggcttccaggttgtaaaagtgggagcgaatggtgaggtggagactgtagagcaggaagag
ctccaagcagcccacgatgagctccaagcaacacaggaggaggaagaggaagatgacgaa
gtggttgaacctgaagctgctgtccctcagcaagaagacccagaatggtcaaaggatcca
gattaccagcccatcgctgctatccgcaaagggaaaaagggcaaaaagagccgacttcgg
tatgcagaaggagatcgggacatggatgtttctgtgtacgactttgaggaagaacagcag
gaggggctcctgtcagaggtcaatgctgagaaggttgtgggcaatatgaagcctccaaag
cccaccaagatcaagaaaaaaggtgtgaagaaaactttccagtgtgagctctgtagctac
acctgtccaagacgttctaatctggatagacacatgaagagccacactgacgagcggccg
cacaaatgtcacctgtgtggcagagccttcagaacagtcacgctgctgaggaaccacctg
aacacacacacaggcacccggccacacaaatgcacagattgtgacatggcgtttgtgacc
agtggagagttggtgcgtcatcgtcgctacaaacacacacatgagaaacccttcaagtgt
tcaatgtgcgactattccagtgtggaggtgagcaagttgaaacggcacatccgctctcat
actggggagcggccgttccagtgcagtctttgcagctacgccagcagagacacctacaag
ctgaaaagacacatgaggacacattcaggggagaagccgtacgagtgttacatctgccac
gcccgtttcacacagagcggcaccatgaagatgcacattctgcagaaacacacagaaaac
gtggccaagttccactgcccccactgcgatacggtgatcgctcgcaagagtgatctaggt
gttcacttgcggaagcagcactcgtttatcgagacagggaagaaatgtcgttactgcgac
gctgtgtttcacgagcgctacgctctgatccaacaccagaagactcacaagaacgagaaa
cgtttcaagtgcgaccagtgtgattactgctgcagacaggagcgccacatgattatgcac
aagcgtacacacacaggggagaagccatttgcctgtagccagtgtgagaagactttccgt
cagaagcaacttctggacatgcacttcaagcgttaccatgatccaaactttgttcccacc
gccttcgtctgcagcaagtgtagcaagaccttcactcgcaggaacacaatgctgcgtcac
gcagagaactgcatgggtgaagctggtggagacgaaaacggagacccgtctcccaagaag
ggacggcgtggcagaaagaggaagatgcagagcagaagggacgatgatgacgacgatgag
gataacactgaaggagaactggatgaagtagaagacgaggaagatgaaatgctagatgag
atcgaagtggaacaagccgaaccagttgtcccaattcctgcaccagttgaacccccggtg
aagaggaaacgtggacgccccccgaagaacaagcctgaccccgctgccatcatccgtgtg
gaggatgaggtcacaggggaggtggatgacatcatcgtgaagaaggaggtcggtgcggag
caggaagagggcaccatggaggaggtggtggttggcggcgtcaagtcgaccattcagttg
gaggagctgtctcaggtagaaggagcggaggtgcagatgagcgaggccccgcccaacgga
gacctgacccccgagatgatcctcagcatgatggaccgatga
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