Xiphophorus couchianus (Monterrey platyfish): 114142917
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Entry
114142917 CDS
T05908
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xco03009
]
114142917 (ddx21)
03036 Chromosome and associated proteins [BR:
xco03036
]
114142917 (ddx21)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114142917 (ddx21)
Ribosome biogenesis [BR:
xco03009
]
Eukaryotic type
Pre-60S particles
Helicases
114142917 (ddx21)
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
114142917 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
114142917
NCBI-ProteinID:
XP_027870290
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All DBs
Position
4:13589425..13597877
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AA seq
743 aa
AA seq
DB search
MPSKIIFETEEETTEKDMDTVAEAETFKVKNKSKEGKKLKKKQQQAEEQEEDPDCDPPAP
KKKKKKDKLAADQANGHINEAADLNGNSEDVESPKKTKKKKKEASEKNQKQKKATAEAAT
NGHSTPNTPVQTPSKTPSQSSDELASDSENEQTPEQREGAFSNFRISKVTIDKLKARGVT
YLFDIQVKSFNAVYDGEDVIAQARTGTGKTFSFALPLVEKLQNDSVEMMRGRPPKVLVLT
PTRELAIQVSKDFKDIAKRLSIACFYGGSSYNPQIDAIRNGIDILVGTPGRIKDHLENNK
LNLTKLKHVVLDEVDQMLDMGFAEQVEEILGTSYKKDSDTNPQTLLFSATCPPWVYDVAK
KYMRPGCKHIDLIGKKTQKAATTVEHLAITCHWSQRAAVIGDVVQVYSGSHGRTIVFCET
KKEANELAMNASIKQSSQSLHGDIPQKQRETTLKGFRNGVFEVLVATNVAARGLDIPEVD
LVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVETKAGITFRRVGVPT
ANDIIKSSSKDATRFLDSVPAAAVEYFRESAEKLIKEKGAVDALAAALAHISGATSLEQR
SLLSSDAGYTTMQLQCSQEMHNLGYAWRTIKEQLGEDFENHIHRMTFLKGKMGVCFDVSA
DKVKDIQDNWKDCRRWQLTVATELPELEEKQFTNRGDRGGFRGGRGRGFGGNGGRNGGFR
SGGGGGYNNRGGHKRTFGQAFDY
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaaaaatcatctttgaaactgaagaagaaaccaccgagaaagatatggacacc
gtcgcggaagctgaaaccttcaaggtgaagaacaagtcaaaggaaggtaagaagctgaag
aagaaacagcagcaggctgaggagcaggaggaggatccagactgtgatcctccagcaccg
aagaagaaaaagaagaaggacaagctggcagcggaccaagcgaatggccacatcaatgag
gccgctgacctgaatggtaacagcgaggatgtagagtcaccaaaaaaaacaaagaagaaa
aaaaaggaggcatcagagaagaaccagaagcaaaagaaagcaaccgctgaggcagcaacc
aatggacattccaccccaaacacaccagttcaaactcccagtaagaccccatcccagtca
agcgatgagttggccagtgacagtgaaaatgagcagacacccgagcagagagaaggagct
ttctccaacttcagaatttccaaagtcaccattgataaactgaaagctcggggagtcacc
tacctgtttgacattcaagtaaagtcatttaatgccgtatatgatggagaggatgttatc
gcccaagcccgtactggaacaggaaagaccttctccttcgccttaccgttggtagaaaaa
ctccagaacgattcagtggagatgatgagaggccggcctcccaaggtgctagtcttgact
cctaccagagaattggctatccaggtctccaaggacttcaaagacattgccaaaagacta
tccatcgcctgtttctatggaggcagctcatataacccacagattgatgctattcgtaac
ggaattgatattttggtgggaacgcccggtcgcattaaagatcaccttgagaacaacaaa
ctcaacctcaccaaactgaaacacgtcgttctggacgaagtggaccaaatgttggacatg
gggtttgcagaacaagttgaagagattttgggtacttcgtataagaaagacagcgacacc
aacccacagactcttctgttttctgcaacctgccctccttgggtgtatgatgtggccaag
aaatacatgagaccaggctgcaagcatatcgacttgatcggcaagaaaacacaaaaagcg
gcaacaactgttgagcacctggccatcacgtgccactggtcccagcgtgctgcagtgatt
ggagatgtagtccaggtgtacagtggcagccatggaagaacaatcgtcttctgcgaaact
aagaaggaagccaatgaattggccatgaatgcttctatcaaacagagttcccagtccctc
catggggatattccacagaaacagagagagacgactctgaaaggtttcaggaatggtgtc
tttgaggttcttgttgccacaaacgtcgccgcccgtggattagacatcccagaggtcgac
ttggtggtccagtgttctccgccaaaggatgtcgagtcctacatccatcgttcagggcga
acaggacgagcgggcaggactggcgtctgcatctgcttctaccagaggaaggaagaggac
cagttacgctacgtagagaccaaagccggaatcactttcaggcgagtcggtgttccaact
gccaacgacatcatcaagtcatccagcaaagacgccaccaggtttttggactccgttcca
gccgcagctgttgaatatttcagggaatcggcagagaagctgatcaaagagaagggagcg
gtggatgcactcgctgctgctctggcccacatttctggagccacgagtctagagcagaga
tctctgcttagttctgacgctggctacaccacaatgcagttgcagtgctcccaggagatg
cataatctaggttatgcctggagaaccattaaagagcagctgggagaagactttgaaaac
cacattcacagaatgaccttcctcaaaggcaaaatgggagtttgttttgatgtctcagct
gataaagtcaaagacattcaggataattggaaagactgtcgccgctggcagctgactgta
gccacagagctcccagagctggaggagaagcagttcaccaaccgtggagacagaggcggg
tttagaggcgggagagggcgcggctttggtggaaatggaggacgtaatggcggcttccgg
agcggcggcggcggaggctacaacaaccgaggaggacacaaacggaccttcggccaagcg
ttcgattactga
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