Xiphophorus couchianus (Monterrey platyfish): 114142949
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Entry
114142949 CDS
T05908
Symbol
katnb1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xco04812
]
114142949 (katnb1)
Cytoskeleton proteins [BR:
xco04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
114142949 (katnb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
PROPPIN
WDR54
Beta-prop_IP5PC_F
Beta-prop_NWD2_C
Ge1_WD40
Beta-prop_LRRK2
Beta-prop_VPS8
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
114142949
NCBI-ProteinID:
XP_027870382
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All DBs
Position
4:787394..800452
Genome browser
AA seq
692 aa
AA seq
DB search
MAAASSTKISWRLQEFEAHSRTVSCLSLGKNSGRLLATGGEDCRVNIWAVSKANCVMSLT
GHKNPVECVQFSVSEEQVAAGSQSGSIRVWDLEAAKILRTLMGHKANITGLGFHPFGNFL
ASSSVDTNIKLWDVRRKGYVFRYKGHTDAVRSLAFSPDGKWLASASDDCTVKLVLVLSLQ
LWDLFQGKTITEFKSHSAAVGAVQFHPNEYLLASGSVDRSIKLWDLEKFTRVGSLEGDTS
AVRCLLFSPDGSCLYSGASDSLRVFGWEPDRCFDTVPVGWGKVSDLAVCNQQLIGVSHQL
SSVSSFVVDLKRVKQSGGAVIQGIVRDDRPLTDPAEPRAAALRRNYDRPATACSSHRMKR
SDTDRRSPDGERRSQSEDEAEDKQPSAEIHNADDYREIFQPKRAISRTPPRMSEPFPAPP
EDESVTAVGRQLKDMMLPSPDKQQAPPLATSTPIQRVEPTVVAFTKPCSPAPSSQPAPPT
RPPPLPRVIPSSRNEPLGLNVADFLPSPANHRGGALTDDGALAQINKGHDTMCVMLSSRQ
RNLQTVRSVWTRDDVKSALDAAVSMNDLSIVVDVLNIVNLQPSLWKLDLCTTVLPQIDKL
LQSKYESYMQTGSTSLKLIMKHFWTLICDTLRASPAVGVDITGEERHQKCRECCRYLKNL
SNVVKNRAGQAGRHGSAFKELQLLMAPLDEAL
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgccagcagcaccaagatctcatggcgcctgcaggagttcgaggcccactcc
agaaccgtgtcctgcctgtctctggggaagaactcgggccgcctgctagccacggggggc
gaggactgccgcgtcaacatctgggccgtcagcaaggccaactgcgtcatgagcttgacg
ggtcataagaaccccgtggagtgcgtccagttcagcgtgtcagaggagcaggttgcagct
ggttcccagtctggatccattcgagtgtgggacttggaggctgccaagattctgcggact
ctgatgggacacaaagcgaacatcacgggtctcggcttccacccgtttggaaacttcctg
gcctccagctctgtggacaccaacataaagctctgggacgtccggaggaaaggatacgtg
tttcgctacaagggtcacacagacgctgtgaggagtttggccttcagtccggacgggaag
tggttagcctcggctagcgacgactgcaccgtgaagctggttctggttctgtctctgcag
ctgtgggacctgttccaggggaaaaccatcaccgagttcaagtcgcactcggcggccgtc
ggcgcggtccagttccatcccaacgagtacctgctggcgtccggcagcgtcgacaggagc
atcaagctgtgggacctggagaagttcaccagggtcggctctctggagggagacacgtct
gccgtgaggtgcctgctgttcagcccggacggctcctgcctctacagcggcgcctcggac
tccctgcgggttttcggctgggaaccggatcgatgcttcgacacggttccggtcggctgg
ggaaaagtatcggacctggccgtctgcaaccagcagctgatcggcgtgtcccaccagctg
tccagcgtctcgtccttcgtggtggacctgaagcgggtgaagcagagcggtggcgccgtg
atccaggggatcgtccgggacgaccggccgctcaccgatccggcggaacccagagcagcg
gcgctgcggcgcaactacgacagacccgccaccgcctgcagctcccacaggatgaagcgc
tcagacactgataggcggagccccgatggagagaggcggagccagagtgaggacgaggcg
gaggacaagcagccgtcagccgagatccacaacgccgacgactacagagagatcttccag
cccaaacgcgccatctctcgaactcctcccaggatgtcggagccgtttcctgctcctcct
gaagacgagagcgtgacggctgtcggccggcagctgaaggacatgatgctgccgtctccc
gacaagcagcaggctccgcccctcgccacctccacccccatccagagggtcgaacccaca
gtggtcgccttcaccaagccgtgtagccccgcccccagcagccagcctgcccctcccacc
aggccgccgccgttgccgcgggtgatcccgagcagccgcaacgagccgctgggactcaac
gtggccgacttcctgccgtccccagccaaccaccggggcggcgctctcaccgacgacggc
gctctggcacaaatcaacaaaggtcacgacactatgtgtgtgatgctgagcagccgccag
cgcaacctgcagacggtccggtccgtctggacccgcgacgacgtcaagagcgctctggac
gccgccgtgtccatgaacgatctgtccatcgtagtggacgtcctgaacatcgtcaacctg
cagccctccttgtggaaactggacctctgcaccacggttctccctcagatcgacaagctg
ctgcagagcaaatacgagagctacatgcagaccggctccacgtcgctgaagctcatcatg
aaacatttctggactctgatctgcgatacgctcagggcgtcgccggcggtgggggtggac
atcaccggggaggagcggcaccagaagtgccgggagtgctgccgctacctgaagaacctg
agcaacgtggtgaagaaccgggccggccaggccggtcgccatggcagcgccttcaaggag
ctgcagctgctgatggcgccgctggacgaggcgctgtga
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