Xiphophorus couchianus (Monterrey platyfish): 114142998
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Entry
114142998 CDS
T05908
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03420
Nucleotide excision repair
xco04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
114142998 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
114142998 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114142998 (ddb1)
03400 DNA repair and recombination proteins [BR:
xco03400
]
114142998 (ddb1)
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Adoptor protein
114142998 (ddb1)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
114142998 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
114142998 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Glyco_trans_4_2
Motif
Other DBs
NCBI-GeneID:
114142998
NCBI-ProteinID:
XP_027870474
LinkDB
All DBs
Position
4:6306568..6355365
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVTVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHKQLIQITSGSVRLVV
QDSKALVSEWKEPQGKNISVAACNHTQVVLAVGRALYYLQILAGELKQISTIAMEHEVAC
LDITPLGEGGNESTLCAVGLWTDISARVLKLPCFTALHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGALSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRRICYQEVSQCFGVLSSRVEIQDVSGTTSAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYSLSIVSCRLGKDPSVYFIVGTAMVYPEE
PEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLTKVIKSVGKIEHSFWRSFHTER
KTEQGTGFIDGDLIESFLDLSRAKMQEVVSTLLIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcttataactacgtggtaacagcgcagaagcccacggcagtgaacgcctgcatcaca
ggtcacttcacctctgctgaggaccttaatttgctcatcgctaaaaacacacgtttggag
atctatgtggtcacagctgagggacttagacctgtcaaggaagttggcatgtatggcaaa
attgctgtcatggagctcttccgtccaaagggtgagagcaaagacctgctgttcattctc
acatccaagtacaatgcatgtatcctggaatacaaacagaacggggagagtattgacatc
atcacccgtgcccatggcaacgtccaggatcgcattggacgtccatcagaaacagggatt
attgggattgttgacccagaatgccgcatgatcggtctgaggttgtacgacggattgttc
aaggtgatcccgttggaccgggataaccgagagctaaaggcgttcaacatccggctggag
gagctgcaggtcatcgatgttcacttcctgtatggctgccaggctccaaccgtctgcttc
atctaccaggaccctcaaggacgtcatgtaaagacttacgaagtttctctgagagagaag
gagttcaacaagggcccctggaaacaggagaatgtcgaggctgaagcatccatggttatt
ccagtgccggagccatttggtggcgctataatcataggacaagagtcaatcacctaccac
aatggggacaaatacctggccattgccccaccaacaatcaagcaaagtaccattgtttgc
cacaaccgggtggaccccaatgggtcgcgctacctgctgggagacatggagggtcgtctg
ttcatgctgctcctggagaaggaggagctaatggacggcaccgtggctctgaaggacctg
catgtagagcttctgggagagacctctatagctgagtgtttgacctacctggacaatggt
gtggtgtttgttggatccagattgggagactcccaacttgtgaagcttaacgtggacagc
aatgagcagggctcctacgtcacagtaatggagacgttcaccaacctggggcccattgtg
gatatgtgtgtggtggacctggagagacagggtcagggccagctggtgacatgctctgga
gcgttcaaggagggttctctgcggatcatccgcaatggcattgggattcatgagcatgcc
agcatcgacctgccaggaatcaaaggtttgtggccacttcgctctgaggcaggccgggag
acagatgatatgttggtactgtctttcgtgggtcagacgagagtgttgatgctaagcgga
gaggaagttgaggaaaccgagctgccaggttttgtggacaaccagcagacattttattgt
ggaaatgttgcacacaaacaactcattcagatcacatcaggctctgtgcgcttggtggtc
caggacagcaaggccttggttagtgaatggaaagagccgcagggcaagaacatcagcgta
gctgcctgcaatcacacacaagtggtgcttgctgtgggacgagccctgtactacctgcag
atcctcgctggagaactcaaacagatcagcaccatagcgatggagcatgaggtggcctgc
ctggacatcacacctctcggggagggtggcaacgagtccacgctctgcgctgtgggacta
tggaccgatatctctgcacgtgtgctcaaactgccctgtttcacggctctgcacaaggaa
atgctgggcggagagatcatccctcgctccatcctaatgaccacctttgaaggcagctac
tacctgctgtgtgccctgggagatggagcactcttctactttggtcttgacctacagact
ggggccctcagcgagcgtaagaaggtcactcttggcacgcagcccaccgtgctgcggacc
ttcagatcgctgtccacatcaaacgtcttcgcctgctccgaccggcccactgttatctac
tcgtccaaccacaagctggtgttttccaacgtaaatctgaaggaagtcaattacatgtgc
ccactcaactctgagggctacccagacagtctggctttggctaacaacagcacactgacc
atcggcaccattgatgaaattcaaaaactccatattcgcacagttcccctctacgagtct
ccaaggcggatctgttaccaggaggtttcgcaatgtttcggggttctgtccagccgggtg
gagatccaggatgttagcggcacaacgtctgctgtacgacctagtgcaagcacacaggcg
ctctccagcagcgtgagctccagcaagctcttccccagcagcacttctccacatgagacc
tcctttggtgaggaggttgaggttcacagtctgctcgtcgtggatcaacacacctttgaa
gtccttcatgcccatcagttcctccccagcgagtattctctcagcattgtgtcatgtcgt
ctgggaaaagacccatctgtttacttcatcgtcggcacggccatggtttacccagaggag
cctgagcccaagcagggtcgaatcattgtcttccattacaccgacgggaagctgcaaacc
gtggctgagaaggaagtgaaaggagctgtctattctatggtggagttcaatggaaaacta
ctggccagcataaatagcacagtccgtctgtacgagtggacggccgagaaggagctgagg
accgagtgcaaccactataacaacatcatggcgctatacctgaagaccaaaggggatttc
atcctggtgggagacctgatgaggtctgtcctgctgctggcgtacaaacccatggagggc
aactttgaagagattgcccgtgattttaatccaaactggatgagtgccgtggaaattcta
gacgatgacaacttcctgggagcagagaacgcctttaacttgttcgtctgccaaaaagat
agtgcggccaccaccgacgaggagcgccagcatcttcaggaggtcggggtctttcaccta
ggcgagtttgtaaatgtcttttgccatggctcactggtgctacaaaacctgggggagagc
tccacacccacccagggatccgtactcttcggcaccgttaacggcatgatcggtctggta
acgtctctgtccgagggctggtacagcctcctgcttgacctacagaaccgcctcaccaaa
gtcatcaaaagcgtgggcaagatcgagcacagcttctggaggtctttccacacggagcgc
aagacggagcagggcacaggcttcatcgacggggacctgattgaaagcttcctggatctc
agtcgggcaaagatgcaggaggtcgtcagcactctactgatcgatgacggcagcggcatg
aagcgtgaagccacggtggatgaggtgattaagatcgtagaggagctgacgaggatccac
tag
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integrated database retrieval system
