Xiphophorus couchianus (Monterrey platyfish): 114143209
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Entry
114143209 CDS
T05908
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xco03036
]
114143209 (chd9)
Chromosome and associated proteins [BR:
xco03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
114143209 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_Hrp3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
114143209
NCBI-ProteinID:
XP_027870832
LinkDB
All DBs
Position
4:8147894..8236244
Genome browser
AA seq
3006 aa
AA seq
DB search
MDFFDDPNLFVGGLDGLDEDGFHSAPSLVDDLNLSAGFEPLQVEVLGPGKHQEMMPPVSS
QQAVPSYNQPMVHYTGVKAENPLGQVFSGSRNTGCDVGPEQHGQYHSATISQVPQPNGLY
CSTGSPMWGNQDQNGNMFHHVSQQQQQQQQQLCHQQLHNQQLHGRQHTQQQHRSGHQAEQ
QQRMRQQLQRQHSHQQQLLNQHQQITTASVCLQQQQHPTFAFLQGGQSSSQQQIHHSQHQ
LPVRESQFHSRSLPGKPFLERQNASLSGACLQTRQQQGSYQLVRGGPTFSGSGLEDSHLS
FPIHPSSAVHSLPACSVNSAHAYQAAEFPAYPGEPEIPSLSQQSSCRPITTTPITTTVPR
LPGTACQFQSTAHVSQLHSGTTVSQADECPFRALHCSGETQAVCKSSELFGESVSCYPSM
TNHLPSEQQISCGVINTNGYQAFGDNIMPSEAQDGDLEALDPPDLLPDLLPQLEDAFRQQ
DESSCSWFDSSQKKGHENRKSTAIECKEEKPRKNPNGPSSQVQVLSPPVKSSSSSSSSSS
SSSSSSSSSSSEKRVPRRTHHQMESNLHEKQEKANRIISEAIAKARQRGEKNIPRVMSPE
SFPTSSSQYKSHREREHKGNGKARTKEKSSRKACIVPSSKPKQKTKIGKIVIKIGKRKKR
KPESSEEESDDDPPPRHSSKDDDSKRRSNRQVKRKKYAEELEARLSDEDVKVIVKAKKSN
TAASKDPAVQLFVENPTEEDAAIVDKIMSSRIMKKEVSPGVMVEVEEFFVKYKNYSYLHC
EWATEQHLEKDKRIQQKIKRFKMKQAQRALFFTDMDEEPFNPDYVEVDRVLEVSYCEDKD
TGEEVVYYLVKWCSLPYEDSTWELKDDVDQSKIEEFERLQAVKPDSRRVERPPANLWKKR
EQSREYRNGNTLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIHRIGIK
GPFLIIAPLSTIANWEREFHTWTHLNVIVYHGSMISRQMLQQYEMYFRDAQGRVIRGAYK
FQAVITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNLEHKVLLTGTP
LQNTVEELFSLLHFLEPARFPSENNFMQEFGDLKTEEQVQKLQGILKPMMLRRLKEDVEK
KLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGAGQSNMPNLVNTMMELRKCCNHPY
LIKGAEEKILEDFREVHNPTAADFHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQMV
RCLDILEDYLIQKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT
AADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDK
AVLQSMSGRDNSLGGGTGGGAAQQQLSKKEIEDLLRRGAYGAIMDEEDEGAKFCEEDIDQ
ILQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKADIDMDMVNGRN
SLVIDTPRVRKQTRPFSATKDELAELSEGESDSDETKPKLRRNDRLNSYGRTECFRVEKN
LLVYGWGRWKDILNHGRFKKQLTEWDVESICRALLAYCLVHYRGDDKIKSFMWDLIAPTE
DGRTKELQNHLGLSAPVPRGRKGKKMKTQTSSFDIHKAEWLRKHNPEHMLQDDGYKKHLK
HHCNKVLLRVRMLYYLKQEVIGSQAQKVLDGGDSSEVKIWVPDPDHSELPALWWDAVADK
CLLLGVFKHGYEKYNTIRADPTLCFLDRVGRPDEKAIAAEQRGNDFMDGDVDDPEYKPAP
ALLKDDMEDDASSPGDLVVSDNAGDAPPVTEGQTSYWPSPSVLTARLRRLITASQRYTKS
RQILHIHQTQSQSQPQQAMMLSAPICPLPPTLKDTLNPKMAAKIERQQRWTRREEADFYR
VVSTFGVVFDPNLGRFDWTKFRAMARLHKKTDESLQKYLCAFTAMCRRVCRLPPKDGDSA
VDPSLTIQPITEERASRTLYRVELLRQVREQVLRHSLLFERLSLCQMSSDLPVWWEAGTH
DRDLLIGAAKHGVSRTDYHILRDPDLCFMAAQRNYSQVKAAQQQQQQRTTTPLLLPQYQA
AGPLPTGSPLPPSTQRDPDPCGIVPKVEEASEEEEIKERQGESWSPPQPPATPTGLEEKP
VSVAKDSERQMVAARTKPLTPNSTERKPKKASKRGRREARRGSESDSDGSSSSSSSRSSS
SSSSSSSSSSHSGSSSSSSSSSCSSGSSSSSSSSSSSSDDSESEGEEAKKKVPVTTSVKG
FDEDSVASLSTTQDEMQDSHVSENGVTNNSTHPFQGGGYMLAASYWPKDRVIINRLDSIC
QAVLKGKWPGHRRVYEPGSTVASFYTTKLLDNANSLCEDPSASPQGSKVTKHVAENKEFS
VKLNDQEGGLKLTFQKQGLPIKRPLESEEGPQAQQQYLARLHELQSASDTGLADITKPQS
SFQTVTPGVSGQMRLNGVMDGQPVVKKRRGRRKNVEGMELLFMNRNKSSATPDPVAPGWG
GIGQVGITGAAAQMNSSQIPADTDTRIPVINLKDGTRLAGDDAPMRKDLDQWLREHPGFV
ADTGAFIPGVGKMQMQFHFQDGRPKQKRHRCRNPNKIDVNSLTGEERVQIINRRNARKIG
GAFAPPLKDLCRFLQENPEYGVPPEWADVVKQSGYLPESMFDRILTGPIVPEEVSRRGRR
PKNPLAKAAVASAAAAAPSSAPSALGLNSLLANGLLSGMDLGSLQAFQQNLQSLQSLQLT
AGLMGLPPDASNLAASNLAAMFPMMLSGMAGLPNLLGMSSMLGKPTQEAAGGSEEKTKGT
DSSGTYEPSNAPSNTSETKGERTEDVNTTPSSTSSSASSATVTPSASAASAATSHPLSLN
PLLLSSMLYPGMLLTPGLNLPVSATQLQSSNSDPSTLPSAAAAPLPSAPAASHSSLTEME
QPSGKEEEEEDEAPEEALDDEEEDDEESAEPRENSGPEGSAKAESSSSESGSSSSSSDDS
DSSDED
NT seq
9021 nt
NT seq
+upstream
nt +downstream
nt
atggacttttttgacgatcccaacctctttgtcgggggtttggatgggctagatgaagat
ggtttccattcagcaccgtcgcttgtggatgacctcaatctcagtgctggttttgaaccc
cttcaagtggaggtacttggcccaggaaagcatcaagaaatgatgccaccagtctcttcc
caacaagctgtgcccagttacaaccagccgatggttcattatactggcgttaaggcagag
aatcccctggggcaggtattttctggttctcgaaacacaggttgtgacgtgggtcctgag
caacatggccagtaccacagtgccaccattagccaagtacctcaacccaacgggctgtac
tgcagtactggaagcccaatgtggggcaaccaagaccaaaatgggaacatgtttcaccat
gtatctcaacagcagcagcagcagcaacaacaactttgtcatcagcaactgcacaaccag
caacttcatggcagacaacatactcagcagcagcaccgttctggtcatcaagctgagcag
caacagagaatgcgtcaacagctccaacgacagcacagtcatcagcaacagctgctaaac
cagcatcaacagattaccacagcgagtgtttgcctgcagcaacagcagcatcccacattc
gcctttctccagggaggtcagtccagcagccagcagcagatacaccattctcagcatcaa
ctacctgtaagagaatcccagtttcattccaggagtcttccaggtaaaccttttttggaa
cgtcagaatgcctctttgagtggggcctgcttgcaaacacgtcagcagcaggggagctac
cagttggtcaggggaggtccgaccttctccggatcaggactcgaggactctcacctttca
ttccccatacatccatcatctgcagtacactccttgcctgcatgctctgtcaattcagct
catgcttaccaagcagcagagttccctgcctaccctggagagccagaaatacccagtctc
agtcagcagtcttcatgtaggcccatcactactacaccaattactactacagtgcctagg
ctgcctgggacagcatgccagttccagtccacagcacacgtgagtcagctgcactctgga
acaacggttagccaggcagacgagtgtcccttcagagccttacactgttctggagaaacc
caggcagtctgcaaatcatcagagctgttcggcgagtcagtgagttgctatccaagcatg
acaaaccacctaccctctgagcagcagatcagctgcggggttattaacactaatgggtac
caagcttttggagacaatattatgccatcagaggcgcaggatggagacttggaagccctg
gatcctcctgacctcctgcctgatctgctcccccagctggaggacgctttcaggcagcag
gacgaatccagctgttcttggtttgattccagtcagaagaaagggcacgaaaacaggaaa
tcaacagctatcgaatgcaaagaggagaagcctcgaaaaaaccccaatggtcccagtagc
caggtgcaggtcctcagtccccctgtgaagagcagctcttcctcctcctcttcctcttct
tcttcgtcttcatcctcatccagctcctcatcggagaagagggtgccacggaggacacac
catcagatggagtcaaatctgcatgagaagcaagagaaggccaataggataatatcagaa
gccatcgctaaggcccgacagcgaggagagaagaacatcccacgagttatgagcccggag
agcttccccacctcttcttctcagtacaagagccaccgtgagcgcgagcacaagggaaac
gggaaggcccggaccaaagagaaatcctcccggaaggcctgcattgtaccctcctcaaag
cccaagcaaaagaccaagatcgggaaaattgtcatcaagattggaaaaaggaaaaagcga
aagccagagtcgtcagaggaggagtcggatgatgatcccccgcctcgtcactcttctaag
gatgatgattctaagaggcggtcgaaccgtcaggtgaagagaaagaagtatgctgaagag
ctggaggccagattgtcagatgaggatgtcaaagttattgtgaaagccaagaaaagcaac
actgctgcatccaaggaccctgctgttcagctgtttgttgagaatccgacagaggaggat
gctgctattgttgacaaaatcatgtcttctcgtatcatgaagaaggaggtatctccaggg
gtaatggtagaagtggaagagttttttgtaaaatacaaaaactactcctacctccattgt
gaatgggccactgagcagcacctagaaaaggacaagaggattcagcagaagatcaaacgc
ttcaagatgaaacaagcacagagggcgctcttcttcacagatatggatgaggaacctttc
aacccagactatgtggaagtcgacagagtgctcgaagtgtcgtactgcgaggacaaagac
acaggagaggaagtggtgtactacctggtgaagtggtgttctctgccttatgaggacagc
acgtgggagctgaaggacgacgtcgatcagagcaagattgaagagtttgaacggctgcag
gcagtcaagccagactcgcgtagagtggagcggcctccagccaacctttggaagaagagg
gagcagtcgagggagtacaggaatggcaacactctcagggattaccagctggagggggtc
aactggcttcttttcaactggtacaacaggcgcaactgcatcttggctgacgagatgggc
ctgggaaagaccatccagtcaatcacattcctggaagagatccatcgtatcggcatcaaa
gggccctttctcatcatcgcccccctctctactattgcaaactgggagcgagagtttcat
acctggactcaccttaatgtcatcgtttaccatggcagcatgatcagcaggcagatgctg
cagcagtatgagatgtatttcagagatgcacagggtcgggtgattcgaggtgcctacaag
ttccaagctgtgatcaccacgtttgagatgatcctgggcggctgtcccgagctcaatgcc
atcgagtggcgctgtgtgatcatcgacgaggcccatcgtcttaagaacaagaactgcaag
ctgcttgagggcttcaaactcatgaacctggagcacaaggtcctactgacgggtacgcct
ctgcaaaacacagtggaggagctttttagtctcctccacttcctggagccggcacgcttc
ccctctgagaacaacttcatgcaggagtttggtgacctcaagacagaggagcaggtgcaa
aagcttcagggcatcctgaagcccatgatgctgcgtcgtttgaaagaagacgtggagaag
aagcttgctcccaaagaggaaaccatcattgaggtggagctcaccaatatccagaaaaaa
tactatcgcgccatcctggagaagaatttctccttcctggctaaaggagccggccagtca
aatatgcccaacctggtcaacaccatgatggaattaagaaagtgttgtaaccacccctac
ctcataaaaggggcagaagaaaagatcctagaggattttagggaagtacacaatcccact
gccgctgactttcacctgcaggcgatggtgcagtctgctggaaagttggtcctcattgac
aaactgctgcccaagatgaaagcaggaggacataaggtgctcatcttctcccaaatggtg
cgctgtctggatatcttggaagactacctcattcagaaaaggtacttgtatgagcgcatc
gatggacgcgttcgtggaaacctgcgtcaggctgccattgaccgcttcagtaagcccgac
tcggaccgctttgttttccttctgtgtacgagagctggaggcctaggcatcaacctcacc
gcagcagacacctgcatcatctttgactctgactggaaccctcaaaacgacctgcaggct
caggctcgctgtcatcgaatcggtcagaacaaggcggtgaaggtgtaccgtcttatcacc
agaaactcgtacgagcgagaaatgttcgaccgcgccagcctgaagctgggactggacaaa
gcagtgctgcagagcatgagtggccgtgacaatagtcttggaggaggcacgggaggaggg
gctgcacagcagcagttgtccaagaaagagattgaggatctgttgcgacgtggcgcctat
ggagccatcatggatgaggaagacgaaggggccaaattctgtgaggaggacattgaccag
atcctccagcgtaggacgaagactatcacaattgagtctgagggacgaggatccactttt
gccaaggccagctttgtagcatctggaaaccgcacagacatctctctggatgaccctaat
ttctgggacaagtgggccaagaaagctgacattgatatggatatggtcaatggcagaaac
agcttagtgatcgacactcctcgtgtaagaaagcagacgagacctttcagtgccaccaaa
gatgagttggcagagctgtcagagggtgaaagtgacagtgatgagaccaagcctaagctc
agaagaaacgatcgcctcaacagttacggccgcacagagtgcttcagagtagagaagaat
ttgcttgtatatggatggggtcgatggaaagacatcctcaaccacggtcgctttaagaag
cagctgactgagtgggacgtggagtccatctgcagagcccttctagcttactgcctggtc
cattatcggggcgatgacaaaataaagagcttcatgtgggacctcatagcgccgactgaa
gacgggcgcaccaaggagctgcagaatcacctcggcctgtctgccccggtacctaggggc
agaaaaggcaaaaagatgaagacccaaactagttcttttgacatccacaaagctgagtgg
ctccggaaacacaaccctgagcacatgctgcaggacgatggctacaagaagcatctgaaa
catcattgcaacaaggtgctgctccgggtcagaatgctctactacctgaaacaagaggtg
ataggaagtcaggcccagaaggtgctagacggcggggactccagtgaggtaaagatctgg
gtgccagatccggaccactcagagctgccagccctttggtgggatgcagtcgccgataaa
tgtctgctgcttggtgtctttaagcatgggtatgagaagtacaacactattcgtgcagac
ccaactctgtgcttcttagaccgcgtcgggcgaccggatgagaaggccatcgctgcagag
cagcgaggcaatgacttcatggatggggatgtggatgatccagagtacaagcctgctcca
gctcttctgaaagacgacatggaggatgacgcctcttcccctggagatttggtcgtctct
gataatgctggagacgcacctccagtgacggaaggccagacttcctactggccctccccc
tcagtgttgacggccagactgagacgactgatcacggcgtctcagcgctacaccaagagc
cggcagatcctacacatccaccagactcagtcccagtctcaaccccagcaggccatgatg
ctctctgcccccatctgcccgctgccccccacactcaaagacacactcaaccccaagatg
gctgcaaagattgaacgccaacagaggtggacaaggcgagaagaggccgatttttatcgg
gttgtgtccacttttggtgtcgtttttgacccgaacctcgggcgatttgactggaccaag
ttcagggccatggcccggctgcacaagaaaacggacgagagcctgcagaaatacctctgc
gccttcactgctatgtgtagacgagtgtgtcgcctgccacccaaagatggagattctgcg
gtggatccatccctgaccatccagccaatcacagaagagcgagcctctcgtaccctgtac
agagtagagctgcttcgccaggtcagggaacaagtcctcagacattcactgctgtttgaa
cgtctgtccctgtgccagatgagctccgacttacccgtgtggtgggaggccggaactcac
gaccgcgacctgctgatcggcgccgcaaagcacggcgtcagtcggacggattaccacatt
ctgagagaccccgatctgtgcttcatggcagcccaacgcaactacagccaggtgaaagcc
gcacagcagcagcagcagcaacgcacaacaaccccgctcctgctccctcagtaccaggct
gccggaccgttaccgacgggctccccgctgcccccgtccacccagagagacccagatccc
tgtgggattgtgcctaaagtggaagaagcctcagaagaagaggagattaaagaaagacag
ggggagagctggagccccccgcagcctccagcgactccgacaggcctggaggagaaaccc
gtttctgtggcgaaggacagtgagaggcagatggtggcggcgcgcaccaagccgctcaca
cccaactccacagaaaggaaacccaagaaggcgagcaaaaggggccgcagggaggcccgg
cgaggctctgagtcagactcagacggttcctcctcgagctcttcatcacgatcttcttca
tcctcatcttcatcttcttcatcctcctcacattccgggtccagctcttcctcttcctcc
tcatcttgctcctctggctcttcgtcgtcatcgtcgtcctcctcctcctcttctgatgac
agtgaaagcgagggagaggaagcaaagaagaaagtgcctgtaacaacaagtgttaagggt
tttgatgaggacagcgtggcgtccctgagcaccacacaggacgaaatgcaagactcacat
gtgtctgagaatggagtcacaaacaactccacccatcctttccagggtggaggctacatg
ttggctgcatcgtactggcccaaggaccgtgtgataatcaaccgtctggacagcatctgc
caggccgtgctcaagggcaagtggcctggccatcgtcgggtttacgagcccggcagcacg
gtcgcctccttctataccaccaaactgctggacaatgccaacagcctgtgcgaggacccc
tctgcctctccacaggggtcaaaggtgaccaagcatgttgcagaaaacaaggagttctca
gtaaagctcaatgatcaggaaggaggtctgaagctgaccttccagaagcagggcttgcct
ataaagagacccctagagtctgaggagggcccccaggcccagcaacagtatctggcccgg
cttcatgagttgcagagcgcttcggacacaggcctggcagacataaccaagcctcaaagc
tctttccagactgttactccaggtgttagtggtcagatgaggttgaacggagtaatggac
ggccagccagtggttaagaagcgacgggggagaaggaagaatgtagaaggaatggagctg
ctcttcatgaacaggaataaatcatctgctactcctgacccggtggctccaggatggggt
ggaatcggccaggtgggcatcacaggagctgctgcacaaatgaactccagtcagatccct
gcagacacagacaccaggatccccgtcatcaacctgaaggacggcacccgactggcaggc
gacgacgctcccatgaggaaagacctagaccagtggcttagggaacacccaggctttgtc
gcagatacaggagcttttatcccgggagtaggtaagatgcagatgcagttccacttccaa
gatggccgacccaagcagaagcggcaccgctgcaggaaccctaacaagatcgacgtcaac
agtttaactggcgaggaaagagtccagatcataaacaggagaaatgctcgcaagatcggt
ggagcttttgctcctcctctgaaggatctgtgccggttccttcaggaaaatccagagtat
ggggtcccacctgaatgggctgacgtggttaaacagtcgggttatctccctgagagcatg
tttgaccggatcctgactggacccatcgttcccgaggaggtgagccgacgaggacgccga
ccaaagaatcccctggccaaggcagcggtggcttcggcggctgcagcagcacccagctct
gcaccttccgccctgggtttaaattccctgctggctaacggtctcctctctggcatggac
ctcggcagtctgcaggccttccagcaaaacctccaaagtttacagtccctgcagctcact
gcaggcctcatgggactgccgccagacgccagcaacctggccgcgagcaatcttgccgcc
atgtttcccatgatgctttctggtatggccggattgccaaacctgctcggcatgagcagc
atgcttggaaagcctactcaggaagctgcgggaggttccgaagagaagacgaagggaacc
gacagcagcggaacatacgagccgtctaatgccccctctaacacttcggaaaccaaagga
gaaaggacagaggacgtaaacacgactccttcctccacttccagttctgcttcctctgcc
accgtcacaccaagtgcttcagctgcctctgcagccaccagtcacccactttctcttaac
cccttgttactctccagtatgctttacccagggatgcttctcactccaggccttaacctt
cctgtgtctgccacacagctgcagagctcaaacagtgacccttcaacccttccatctgct
gctgctgctcctcttccgtctgcccccgcagcctcccattcctccctgactgaaatggag
cagccgtcaggaaaggaggaagaggaggaggacgaggcgcctgaggaggctttggacgac
gaggaagaggatgacgaggaatctgcagaaccgagagaaaacagcggccctgaaggttca
gcaaaagccgagtcatcttcgtcagagtccgggagctcgtcctcatcctctgatgattcg
gactccagtgacgaggactga
DBGET
integrated database retrieval system
