Xiphophorus couchianus (Monterrey platyfish): 114143258
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Entry
114143258 CDS
T05908
Symbol
vps35
Name
(RefSeq) vacuolar protein sorting-associated protein 35 isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
114143258 (vps35)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xco04131
]
114143258 (vps35)
Membrane trafficking [BR:
xco04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
114143258 (vps35)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FerA
Urb2
Motif
Other DBs
NCBI-GeneID:
114143258
NCBI-ProteinID:
XP_027870930
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Position
4:complement(35782825..35819188)
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AA seq
800 aa
AA seq
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MATPTTQQSAQDEQEKLLDEAVQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSML
SPKSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVY
VRSFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDDGEQVEGSEEMTGDI
NDSIDFVLLNFAEMNKLWVRMQHQGHSRDREKREKERQELRILVGTNLVRLSQLEGVNVD
KYKQIVLPGVLEQVVNCRDSLAQEYLMECIIQVFPDEFHLQTLNPFLRSCAELHQHVNVK
NIIIALIDRLALFAHREDGPGIPPEIKLFDIFSQQVATVIQSRQDMPSEDIVSLQVSLIN
LAMKCYPDRVDYVDKVLESTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNVLMVL
QLKHFPPLFEYFDFESRKTMSCYVLSNTLESNTIIVSQEQVDSILSLVSTLIQDQPDQPA
DDPDPEDFAEEQSLVGRFIHLFHSEDPDQQYLILNTARKHFGAGGNQRIRYTLPPLVFAA
YQLAFRYKANSSVDDKWEKKCQKIFSFAHQTISALIKAELSELPLRLFLQGALAAGEIGF
ENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMRCFSEENHEPLRTQCALA
ASKLLKKPDQCRAVSICAHLFWSGRSTDKNGEEIRDGKRVMECLKKALKIANQCMDSSLQ
VQLFIEILNRYICFYERENDAVTLQVLNQLIQKIREDLPNLEASEETEQINKHFNNTLEH
LRLQRESPESEGPAYEGLVL
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaccaaccacgcagcagtcagctcaggatgaacaagagaagcttctggatgaa
gctgttcaggctgtcaaggtccagtcgttccagatgaaacgatgcttggataagaacaaa
ttgatggatgctttgaagcatgcctccaacatgctaggtgaactgagaacatccatgctc
tctccaaaaagctactatgagttatacatggccatctctgatgaactgcactatctcgag
gtttatttgaccgatgagtttgccaagggacgcaaggtggcagatctttatgagctggtc
cagtatgctgggaacatcatacccaggctctatcttctgatcacagtgggcgtagtgtat
gttcgctcctttccccagtctcgcaaagacatcctgaaagacttggtggagatgtgtcgt
ggcgtccaacacccactcagaggtctcttcctgagaaattatctgctgcagtgtacccgt
aacattcttccagatgatggagaacaagtggagggctcagaggagatgactggagatatt
aatgactccatagactttgtccttctgaactttgctgaaatgaacaaattgtgggttcga
atgcagcatcaaggtcacagcagagaccgagagaagagagaaaaagaacgacaggaactt
aggattctggtgggcaccaatctagttcgcctcagtcaactagagggtgtgaatgtggac
aagtacaaacagattgtccttcctggagtcctggagcaagttgtgaactgtagagactca
ttggctcaggaatacctaatggagtgcattattcaggtttttcccgatgagttccatctt
cagaccctgaacccttttctgcgttcctgtgctgagttgcatcaacatgtcaacgttaag
aacatcatcattgcacttattgacagacttgctctattcgctcatagagaagatggtcca
ggcattccacctgaaatcaaattgtttgacattttctctcaacaagtggccactgttatt
caatcacgccaggacatgccatcagaggacatagtgtctttacaagtctctctcatcaat
ttggctatgaagtgctaccctgaccgtgttgactatgtggacaaagttctggaaagcacg
gtagaaatatttaacaagctcaacttggaacacatagcaaccagtagtgctgtgtccaaa
gaacttacccgtcttttgaagatcccagtggatacctacaacaatgtgctgatggtgctg
caactcaagcacttcccacctctctttgaatactttgactttgagtcccgcaagaccatg
agttgttacgtactgagcaacacactggagtccaacaccattattgtttcacaggaacag
gtggactcgatcttaagcttggtttccacactgatacaagaccagccagaccagccagct
gatgatcctgaccctgaggatttcgccgaggagcagagtcttgttggccgcttcattcat
cttttccactctgaagatcctgatcagcagtatcttattcttaataccgcccggaaacat
tttggtgctggaggaaaccagaggatccgttacaccttgcctcctctggtgtttgctgcc
tatcagctggcctttcgatacaaagccaactcatcagtggacgataagtgggaaaagaag
tgccagaagatcttttcctttgcccaccagactatcagtgcacttatcaaggctgagctt
tctgagttgcctctgcgactgttcctgcagggagcgctggctgctggtgaaattggtttt
gagaatcatgaaacagtggcatacgagttcatgtcacaggccttttctttgtatgaggat
gagattagtgactccaaagcccagctggcagccattactctgatcatcggcacctttgaa
cgaatgagatgtttcagtgaggaaaatcacgagcctttgaggactcaatgtgctctggct
gcttccaaacttttaaagaagcctgaccagtgccgagccgtcagcatatgtgcccatctc
ttttggtcaggtcgcagcactgacaaaaatggcgaagagatacgtgatgggaaacgggtg
atggaatgtctaaagaaagccctgaagattgccaaccagtgcatggattcatcattgcaa
gtccagcttttcattgaaatcctcaacagatacatctgcttttatgagagggaaaatgat
gcggtgactctccaggtactaaatcagttgatccaaaagatcagagaagatcttcctaac
ctggaggcaagtgaagaaacggagcagatcaacaaacatttcaacaacacgctggagcat
ctccgtctgcagagagagtctcccgagtccgagggacctgcatacgagggattggtcctt
tga
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