Xiphophorus couchianus (Monterrey platyfish): 114143438
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Entry
114143438 CDS
T05908
Name
(RefSeq) LIM domain only protein 7-like isoform X1
KO
K06084
F-box protein 20
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
114143438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xco04121
]
114143438
Ubiquitin system [BR:
xco04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
114143438
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CH
DUF4757
PDZ_6
PDZ
LIM
PDZ_2
Motif
Other DBs
NCBI-GeneID:
114143438
NCBI-ProteinID:
XP_027871275
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All DBs
Position
4:complement(21033597..21056155)
Genome browser
AA seq
1315 aa
AA seq
DB search
MEWRQQSSVSCKDAFTEARRWIEEVTGKSFGCSDFRSALENGVLLCDLINQLKPGIIKRM
NRLSTPIAGLDNVNVFLKACGKLGLNESQLFHPGDLQDLSTRVTLRRDESQRRLKNVLIT
IFWLGRKAQFDTYYSGPQLNFKAFEGLLGLALSKALEEGSNTSVKDGVYKECHYSEGEQS
LQTRQNYDKENSVDGFECVDPQAVRLNEEGFESNAEAEQVYKMDSTKVSAHLDKGHFPPP
LRRKREECMVGQIPRAYQTQIRPETPVQVNPGWIWSKSLSDIPMVYPARKVSNGNAISDK
GQDTSLPRDWNLEIERKYSIGARDSEAQWQDDLTRWKNRRKSSKPELYRRSFERDHVFNH
LTNGTLTNSDGNEAPGGPIKRDQSPWRHSSSPRPYSVSPSKPLSSDLRPHTKVILTRSYT
TEAAFSSQSHSRESQLGGKPESGGSIRGEETYFASLAAYGRDRVTTPSLYQTFSTQTQVK
SLGNQFSFLSTSEQTQPECVLPYQNSSLATFTTPGLFDSKESTRSCNAALYKHSFSTEPK
GRICYPDVADQSGVTVTEDLANPIKKSQETPKIIDSPEDGVTCQQESAGVSKYLSRSTTW
SSSASLPRGYRRSEGSTHRSSAITARPFGTKPSRHSLPRQYKVDGQSLMSNTEDSHSSFT
RPSLKRQTAAAHLRGQYQASIRQKKSNQVRQTATAQKEEVNSQPSTHIQPQPSAKQQSRH
NKSLVLAYNASADLSKVDHSDMRVSLTLKPNSVPDFGFQTQWDSTGVKIKSIQPGSPAEH
CQLCVDDEVVAVDGVALAYMTYSQWKDKMASSLQTGSLTMDIRRYGIKDWSMNKGSNLNR
PGQSMLTLNLTSAAPVLIGRSNHHANNAASTEMTDTQESQFNGQTDNVFSSLQETQEKAI
GALFSGNATNVGRKENNSITTENQKKRTEFFTQKGFAGISSSVYLCGGSESAISDIQVPS
LNPSSSSWSWDREEDRRRQEKWQEEQERLLQEQYQRDQERLEAEWQRAQQAAIEGGMLKE
NTAEQASGREKFVSSQLCVNGLTKETKDEKLNLNRDDGKDAELKRSNDAHRMQNNRNTEK
DWAEGSHGFAQLSHAHRVMSMSTPSLSGPYRQTRGLVDPRKGRALTMSKAERERLQILEE
MKKRTQLLTDNSWIRQRSGSFHKEPIEVGTFMKRYESLDNLDILHRAPDSAATFTYPRPN
SAAAVYNYQSRNASTRYSTGSISFQRNANMESSHHARMISGRRTCCMCERALGSGAAMVI
DALSLCFHLTCFQCVGCHRHIGGTETGVQVRIRNRKPYCDYCYFQLKCECWTLQD
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgccagcagagcagcgtcagctgtaaagacgccttcaccgaggctcggcgc
tggattgaggaggtgactggaaaatcttttggctgcagcgacttccggtctgccctagaa
aatggagttctgctttgtgacttaatcaaccagttgaaacctgggattatcaaacggatg
aacagactttccacgcccattgctggcctggataatgtgaatgtttttctgaaagcctgt
ggaaaacttggactaaatgagtcccagctgttccatcctggtgaccttcaggatctttcc
actcgggtgacactcaggcgtgatgaaagccagagaaggctgaagaatgttcttatcaca
atattctggctgggtcgcaaggctcagtttgacacatactacagtggtcctcagctaaat
ttcaaggcttttgaggggcttttaggattggccttgtccaaggctctagaagaaggcagt
aatacatctgtgaaagatggggtttacaaggagtgccattactcggagggagagcaaagt
ctgcaaacaagacagaattatgataaagaaaattcagtggatggctttgagtgtgtggat
ccccaagccgtccgcctaaacgaagaaggttttgaaagtaacgctgaagcagagcaagtg
tacaagatggacagcacgaaggtctcagcccacctggacaaaggacatttcccaccaccg
cttcgtagaaaacgggaagagtgcatggtgggccaaatcccaagagcgtatcaaacccaa
atcaggcctgagacaccagttcaggtcaaccctggctggatttggagcaaatccctcagt
gacatccctatggtgtatcctgcgcgtaaagtttcaaatggaaatgccatttctgataaa
ggccaagacaccagcctgccgagggactggaatctagaaattgaaagaaaatacagcata
ggtgccagggacagcgaagctcagtggcaggatgatttgacgaggtggaagaatcgacgc
aagagctcaaagcctgaactgtacaggaggtcatttgaaagggatcatgtcttcaaccat
ttgaccaatgggactttaaccaattctgatggtaatgaagcaccaggagggcccataaag
agagaccagtcgccatggcgacacagctcctctccccgtccttactctgtttctccatcc
aaacctctgagctctgatctcagaccacatactaaagttattttgacccgcagctacact
actgaagcagctttcagctctcaaagccattctcgggagtctcaacttggaggcaagcct
gaatctggtgggtccatcagaggagaggaaacttactttgcctctttggctgcatatgga
agagacagagttaccaccccttctctataccaaactttctccactcaaacccaagtaaaa
tctctgggcaaccagtttagctttctttccacatctgagcaaacacaaccagagtgtgtt
ctgccataccagaactcctctcttgcgacattcacaacaccaggactatttgatagcaaa
gaatccacgagaagctgcaacgctgctttgtacaaacattccttcagcactgagccaaaa
gggagaatttgttatccagatgtagctgatcaatcaggagttactgtaacggaggatctg
gcgaatccgatcaagaaatctcaagaaactcccaaaatcattgattcacctgaggatgga
gtaacctgtcagcaggagtctgcaggggtctcaaagtatttgtccagaagtacaacatgg
tccagttctgccagccttcctcgtgggtaccgtcggtctgagggttccactcatcgctct
tctgcaatcacagccagaccttttgggacaaagccatccagacactcactaccaagacaa
tacaaagttgatggtcagagtttgatgtcaaacactgaggattcacattcctcattcacc
agaccatctcttaaaagacagactgcggcagctcacctgaggggtcagtaccaggcctca
attaggcagaagaagtccaaccaggtgaggcagactgctaccgcacagaaagaggaagtg
aacagtcagccctccacccacatacaacctcaaccttctgcaaaacaacaatcccgccac
aacaaaagcttggttcttgcgtataatgccagtgctgacctgtcaaaggttgatcacagt
gacatgagagtgagcttgactcttaaaccgaacagtgtaccagactttggcttccaaact
cagtgggactccacaggagtaaaaataaaatctattcaaccaggcagtccagcggagcac
tgccagctgtgtgtggatgatgaggttgtggcagttgacggtgttgcacttgcatacatg
acctacagtcaatggaaggataaaatggcgtcctccctgcaaaccggtagtctaaccatg
gacattcggcgttatggtatcaaggattggagcatgaataaaggaagtaatctaaaccgg
ccaggacagagcatgttgaccctcaacctgacttctgcagcacctgttttaataggtcgc
tccaatcaccatgccaacaatgcagcctctacagaaatgacagacacacaagaatcccaa
tttaatgggcagacagacaatgttttttcatcgctccaggaaacccaagagaaggccatc
ggtgcgctgttttctggcaatgccactaatgtcggacgtaaagaaaacaatagtataact
acagaaaatcagaaaaagaggacagaatttttcacacagaaaggctttgcaggaatcagc
tcatcagtttatttgtgtggaggctcagaatcggcaatatctgatattcaggtgccctcc
cttaacccgtcctcatccagttggtcttgggaccgagaggaggatcgtaggcgtcaggag
aagtggcaggaagagcaagaacgcctcctacaggagcaataccagcgagatcaagagagg
ctggaggcagagtggcaaagggcacaacaggctgcaatagaaggggggatgctgaaggag
aacacagctgagcaggcgagtggccgcgagaagtttgtcagttcacagctttgtgtgaat
ggactgacgaaagaaacaaaagatgagaagctgaacctcaacagagatgatggaaaagat
gcagaactaaaacgttccaatgatgcacacagaatgcagaataacaggaatactgaaaaa
gattgggctgagggctcccatggttttgctcagctgtcccatgcgcacagggtaatgtcc
atgtcaactccatctctatctggaccatacagacaaacaagaggtttagttgatccaagg
aagggaagagcactgactatgtcaaaggctgagagagagagactgcagattttggaggag
atgaagaaaaggactcagcttctgactgacaacagctggatacgtcagcgcagtggcagt
tttcacaaggagccaatcgaggttggcacgttcatgaagagatatgagtctctagacaac
ctggatattttgcatcgggccccagattctgctgcaacatttacttaccctcgccccaat
tcagctgctgcagtttacaattatcagagtaggaatgcctccacacgctacagcactgga
tcaatatcatttcagagaaatgcaaacatggagtcctctcatcatgccaggatgatcagt
ggcaggaggacttgctgtatgtgtgagcgtgccctgggtagtggggcagccatggtcata
gatgcccttagtctctgtttccacctgacctgtttccagtgtgtgggctgccaccgacac
atcggaggaacagaaactggagtccaggttcgcatccgaaacaggaagccctactgtgac
tactgctatttccaactgaagtgtgaatgttggactttgcaagactga
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