Xiphophorus couchianus (Monterrey platyfish): 114143440
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Entry
114143440 CDS
T05908
Symbol
samd4a
Name
(RefSeq) protein Smaug homolog 1
KO
K27396
protein Smaug
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114143440 (samd4a)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114143440 (samd4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
Motif
Other DBs
NCBI-GeneID:
114143440
NCBI-ProteinID:
XP_027871288
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All DBs
Position
4:complement(3469922..3524441)
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AA seq
725 aa
AA seq
DB search
MMFRDQVGVLASWFKGWNECEQTVALVSLLKRVSRTQARFLQVCLEHSLAECTELQVLEG
EANNPGLISQWQGEPKERIISLVLTHLPLLKPGNTEAKSEYMRLLPRILTHTIEHGHHLE
ESRQLLSYALIHPATSLEDRAALALWLNHLEERAAARGDSLERPPPAAGPHHHHHQSTPP
STLASSGSSSSTNSSSSGNLYNLHHHHHQRYGSDDRLNGWQNSRDSGIGGGWHQQQGCEN
GHLLLYPSTSVPTTINTVGTGGGSNTILSSSGGSQQHSPLKRSVSLTPPISGPNNQPLGH
VWLSQEDLRTSRGPAPDHAPLSPQSSIASSGSGGSEHLDDGGLGGSSSLHRNSFHEDGSG
MRDVPGWLKSLRLHKYAVLFSTMTYDEMMSLTEEQLEAQKVTKGARHKIVISIQKLKERQ
NLLRSLEKDVLEGGNLRTPLQELHLMITTPIKAFSGGEESSLQRPLLSPQSKSSASDSGL
PGGGGGEAEIGSSVIAEGDLPGQFTRVMGKVCTQLLVSRSDEDNISSYLQLIDKCLIHES
FTETQKKRLLSWKQQIQRLFRSIPRKTLLDIAGYRPQRSRFGQSNSLPTTSCVGSSVSAR
RSLHQFHMPSRSLPGARLGLLGSGGLLGPTPRSSSSTPNGPKQGRHGPWFANPGGSNSMP
SRTHSSVQRTRSLPVHTTPQTMVTFQQADHQFPVTEPDINNRLESLCLSMTEHALGDGAD
RTSTI
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttcgggatcaggtgggcgtgctggccagctggtttaagggatggaacgagtgt
gagcagaccgtggctctggtgtcgctgctgaagagggtgagccggacccaggcccgattc
ctgcaggtgtgcctggagcactccctggctgaatgcacggagctgcaggtcctggaggga
gaggccaataatccaggtctgatcagtcagtggcaaggcgagcctaaggagcggatcatc
tctctggtcctcacccacctccctctgctcaaaccgggcaacacagaggcgaagagcgaa
tacatgcgcctgctgccgcgcatcctgacgcacacgatcgagcacggccaccacctggag
gagtcccgccagctgctgtcctacgccctcatccacccggccacctccctggaggaccgc
gccgccctggctctctggctgaaccacctggaggagagggctgccgcacggggcgactcc
ctggagaggccgcctcccgccgccggtccgcaccatcaccaccaccagtccacgcctccg
tccaccctcgcctcgtcgggatcctcgtcttccacaaactcttcatcgtcggggaacctg
tacaacctgcaccaccaccaccaccagcgctacggctccgatgaccgcctcaacggctgg
cagaactcccgggactccgggatcggcggaggctggcaccagcagcagggctgtgagaac
ggacatctcctactctacccatcaacctcggtgccgacaaccatcaacactgttggaacc
ggtggaggaagcaacactattctttcaagcagcggtggaagtcagcagcacagtccccta
aagcgctccgtgtcccttacgccccccatcagcggccccaacaaccagcctctgggccac
gtctggctgtcccaagaggaccttcggacgtccagaggccccgccccagaccatgcgcct
ctctccccccagagcagcatcgcctcttcgggcagtgggggcagcgaacatttggatgat
ggtggcttaggaggcagttcaagtctgcatcgcaattccttccatgaggacggcagtggg
atgagggatgttcctggatggctgaagagtcttcgtctccataagtatgccgtgctcttc
tccacaatgacctacgatgagatgatgtcactgacggaagaacaactagaagcacagaaa
gtcactaaaggagctcgacacaagattgtaatcagcattcagaaactcaaagaaaggcag
aaccttctgcgcagcctggaaaaggacgtcttggagggcgggaatcttcgcacgccgctg
caggagctccacctgatgatcacgactcccatcaaagccttcagcggaggggaggagtcg
tctctgcagcgccccctgctgagtccgcagagcaagagctccgcctccgactccggcctg
cctggaggcggcggaggagaggccgagatcggcagcagtgtcatcgcagagggggatctg
ccaggccagttcacccgtgtcatggggaaagtttgcacccagctcctggtgtcgcggtcg
gatgaggacaacatcagctcctacctgcagctcatcgataaatgtctcatccatgagtcc
ttcacagagacgcaaaagaagaggttgttgtcatggaaacagcagatccagaggcttttc
cggtcgatcccgaggaaaaccctcctcgacattgcgggttaccgacctcagaggagccgt
ttcggtcagtcgaactctctccccaccaccagctgcgtcgggagcagcgtgtccgccagg
cgcagcctccaccagttccatatgccttccaggagcttaccgggagccagactgggttta
ctgggcagcggggggctgctgggacccacaccccgcagctccagcagcaccccaaacggt
cccaaacagggcaggcatggcccctggtttgccaaccctggaggaagtaacagcatgccg
agtcggacccacagctccgtgcagaggacgcggtcgctgccggtccacaccacgccgcaa
accatggttacgttccagcaggccgatcatcagtttccagtgacggagccggacataaac
aatcgcctggagtcgttgtgtttgagcatgacagaacacgctctgggagatggtgcagat
cgcacatcaacgatatga
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