Xiphophorus couchianus (Monterrey platyfish): 114143601
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Entry
114143601 CDS
T05908
Symbol
cftr
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco02010
ABC transporters
xco04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
114143601 (cftr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
114143601 (cftr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xco02000
]
114143601 (cftr)
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
114143601 (cftr)
Transporters [BR:
xco02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
114143601 (cftr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
AAA_21
AAA_29
SMC_N
DUF87
AAA_16
RsgA_GTPase
MMR_HSR1
T2SSE
MeaB
AAA_23
Motif
Other DBs
NCBI-GeneID:
114143601
NCBI-ProteinID:
XP_027871597
LinkDB
All DBs
Position
4:complement(34803378..34882307)
Genome browser
AA seq
1503 aa
AA seq
DB search
MEKSPVEDANFFSRFVFWWISPLLRKGFTKKLELTDVYKAPSFDLADTLSERLEREWDKE
VVLAKGRPKLLKALARCFFLPFAFFGVLLYFGEASKTVQPQLSGRIIASFDPFHAPERSQ
GYYLALGLGLLFTARFILLQPAIYGLHHLGMQIRIALFSLIYKKTLKLSSRVLDKISTGQ
LVSLMSAHLNKLDESLGLAHFVWITPLQCILCTGLIWELIEVNGFCALAALTLLGILQAW
LSLKMGPPRAKRAGLINRRLALTSEIVENIHSVKAYGWEEVMETIIKNIRQDEMTLTRKI
GSLRYFYSASYFFSAILVIISAIVPYALSNGIILRRIFTTASYCIVLRMTLTRQLPGSIQ
MWYDTLALVQKIEDFLLKEEYKVMDYSLTTVGLELINVSASWDEGIVELFEKIKRENKAN
GHMIGDDGLFFTNLYITPVLKNINLRLEEGMMLGVAGSTGSGKSSLLMMILGELVPSEGK
IRHSGRVSYSPQTSWVMPGTIRDNILFGLTYDEFRYTSIIKACQLEEDFDLLPEKDKTPI
AEGGVTLSGGQRARICLARAVYKDADLYLLDAPFTHLDIATEKEIFDKCVCKLMASKTRV
VVTSKLEHLKRADRILLLHNGDCYFYGTFSELQAQRPDFSSLLLGLEAYDSINAERRGSI
LTETLRRVSVDETANFRGPDPNHQSFRQAPSHSHAMGDGYPEKRKPSLILNPLAAARKFS
FIGNSQQTNNFQSTSMDDGAHELSERRFSVVPEDDQVEEVLPRSNLYHHGLQHLNGRRQS
VLAFITNAQGQERREQMQSSFRKKLSITPQCNLASELDIYARRLSKDSVFDISEEVDEED
MEECFADEREKIFETTSWSTYLRYISTNRSLIYVLIFIVIVFVIEVAACVTGIFLITDEI
WRDGANPNSPNYIDEQHPNASSTPVHLAIIVTPTSAYYIIYIFFVHSDSILALGVFRGLP
LVHTLLTVSKRLHEQMLSSVLRAPMSVLNTMKTGRIMNRFTKDMAVIDDMLPLVLFDLIQ
LTLLVIGCIFTVSIMRPYIFISAIPLAVIFVVIRKYFLRTGQQLKQLEAEARSPIFSHLI
ISLKGLWTIRAFGRQTYFETLFHKALNTHTATWFHYLSSLRWFLFRCDVIFVLFFTVAAF
IAIGTNQDRPGEIGIIVALAMLILGTFQWAIITSINVDGLMRSVDRVFKFIDLASEENFQ
GKPGGKGGSDLVINNPSAYSYWPNRGQLNVQGLTVKYTEAGRAVLNDISFTVEGGQSVGL
LGRTGSGKSTLLSALLRLTYTEGEMYIDGVPSSSMPVQTWRKAFGVLPQKVFILTGTFRM
NLDPYGRYSDDELWWVAEEVGLKSVIEQFPDKLDFELKDGGSVLSNGHKQLVCLARSILS
KARILLLDEPSSYLDPITLQVLRKTLKQSFSACTVILSEHKVEPLLECQSFLMIEKSSVK
SYDTIQKLMNEMSHLKQAISPADRLRLFPTPHRLNSVKRPPPQTAKISSLPEEAEDEIQD
TRL
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atggagaagtcaccggtggaagatgcaaacttcttctctagatttgtcttttggtggata
tcacctctactgaggaaaggtttcactaagaagttggagctgactgacgtctacaaggct
ccttcatttgatctggcagacaccctctccgagagactcgaaagggaatgggacaaagag
gtggtgctggccaaaggcaggcccaaactgctgaaagcactggcgcgatgcttcttcctc
ccgttcgccttcttcggtgtcctcctctattttggggaggcatccaagactgtgcagcct
cagctttcaggtcgcattatcgcttcctttgaccccttccatgctccggagcgaagtcag
gggtactacctggccctggggctcggcctcctcttcaccgctcgcttcatcctgctgcag
cccgcaatctacggcctgcatcacctcggcatgcagattcgcattgccctcttcagcctc
atatacaaaaagacactcaagctgtccagtagggtgttggataagatcagtaccgggcag
ctcgtcagtctcatgtctgcccacctcaacaagctggatgagagcttgggactagcacac
tttgtatggatcacccctctgcagtgtatcctgtgtactggtttgatctgggagctgatc
gaggtgaacggcttctgtgccctggcagctctcactctcctgggcattctccaagcgtgg
ctgtccctgaagatgggacctcctagggcgaagcgtgctgggctgataaaccgacgtctg
gctctaacttctgagattgtggagaacattcactcggtgaaggcttacggctgggaggaa
gtgatggaaaccatcatcaaaaacatcagacaggatgaaatgactttaaccagaaagatt
ggctctttgcgctatttctacagtgcttcatattttttctctgccatactggtaatcata
tcggccatcgtgccatatgcactcagtaacggcatcatactgcggcggattttcaccaca
gcgtcatactgcatcgtgctacgtatgacgctcacccgccagctgccaggctccatccag
atgtggtacgacacgctggcactggtccagaagatcgaggattttctgcttaaggaagaa
tacaaagtaatggattacagcttgaccacggttggattggagctgatcaatgtctctgca
tcctgggatgagggtattgttgagctctttgagaagatcaagagggagaacaaagcaaat
ggacacatgattggtgacgatggactgttcttcactaacttatacatcacacctgtcctc
aaaaacatcaacctacgcttagaggaaggcatgatgctcggagtggctggatctactggg
tctggaaagagttccctcctcatgatgatcctgggagagctggtgccatcagagggcaaa
attagacacagcggtcgagtttcgtattcaccgcagacttcttgggtaatgccagggacc
attcgtgacaacatccttttcggcttgacttatgacgaatttcgctacacttccatcatt
aaggcctgccagctggaagaggattttgacttgctgcctgagaaagataagacacccatt
gctgagggaggggttacccttagtggaggtcaaagagcaaggatctgcctcgccagggct
gtatataaagatgcagacctgtacctgctcgatgcacctttcacccacctggacattgca
acagagaaagagatctttgacaaatgtgtctgtaaactgatggcctccaagactcgtgtt
gtggtcaccagcaagttggagcacctgaagcgggcagatcgaatccttctattgcacaat
ggagactgctacttttacggaaccttctcagagcttcaagcgcagcggccagacttcagc
tccctgctgcttggtctcgaagcttacgacagcatcaacgcggagcggcgtggctccatt
ctcacggaaactcttcgcagagtctctgtggatgaaacggcaaatttccgaggcccagac
cctaatcatcagtccttccgccaagcaccgtctcacagccacgccatgggcgatggttat
cccgaaaaacgcaagccttcgctcatcctcaaccctctcgcagctgcccgcaagttttca
ttcatcgggaactcccagcagacgaataatttccagtccacatccatggacgatggggcg
catgaactttcagagagaagattctctgtggtgcctgaggacgatcaggtagaggaggta
cttccgcggagcaacctgtatcaccacgggctgcagcacctcaatggcaggcgccagtct
gttctggcgttcatcaccaacgctcagggtcaggagcggagagagcagatgcagtcatcc
ttcagaaaaaagttgtccatcaccccacagtgcaacctggcatccgagctggacatctat
gcccggcgtctgtccaaagacagcgtgtttgacataagtgaggaagtggatgaagaagac
atggaggaatgctttgcagatgaacgtgagaagatattcgaaactacctcatggagtact
tatctacgctacatttccaccaataggagtttaatctatgtcctaatcttcattgtgatt
gtctttgtcattgaggttgctgcttgtgtcactggcatttttctcattactgatgagata
tggagggatggtgccaacccaaattcaccaaactatatcgatgagcagcaccctaatgcg
tcatcgactcctgtccacctcgccatcatagtcacaccaaccagcgcctactacatcatc
tacatattctttgttcactcagacagcatactggcccttggagttttcaggggtcttcct
ttagtccacacgttgctcaccgtgtctaaaagacttcacgaacagatgcttagctctgtg
ctacgggcccccatgtctgtgcttaacaccatgaaaacaggccggataatgaacagattc
accaaggacatggctgtcattgatgacatgctacctctagtgctgtttgacctcatacag
ttaactttacttgtcattgggtgcatcttcacggtgtccatcatgagaccatacatcttt
atatccgcaatccctctggctgttatctttgtggtcatcaggaagtacttcttgcgaaca
ggacaacaactcaaacagctagaggctgaagctcgtagtcccattttctctcacctcatc
atttcactgaagggcttatggacaattcgagcttttggacgtcagacttacttcgagaca
ctcttccacaaagctctgaacacccacacagccacctggttccactacctgtcctcgctg
agatggttcctgttccgctgtgatgtgatctttgtgttgttcttcaccgtcgctgccttc
atcgccataggaaccaaccaggacagacctggagagattggcatcattgtagctctggcc
atgctcatcctgggtactttccaatgggctatcatcaccagtatcaatgtggacggcctg
atgcgttcagtggatcgagtgttcaaattcatcgacttggcatcagaagagaacttccaa
ggaaaacctggaggaaaaggaggttctgatcttgtcatcaacaacccaagcgcgtacagc
tactggcctaaccgcggccagctgaatgtccagggtctcaccgtcaaatacacagaagct
gggcgggccgtgctcaacgacatctctttcactgtggaggggggtcagagtgtgggtctg
ctgggtcggaccggttctgggaagagtaccctgctgtccgctctgctgcgcctcacctac
actgaaggggaaatgtacatcgacggagttccttccagctccatgcccgtgcaaacatgg
aggaaggcctttggagtgttgccacagaaagtctttattctgactggaaccttccggatg
aacctggacccgtacggccgttacagtgacgatgagctgtggtgggtggctgaggaggtt
gggttgaagtcggtcatcgaacagttccccgataagctggactttgagctgaaggacggc
ggcagcgttctgagcaacggccacaaacagctggtgtgtctggcccgatccatcctcagc
aaggcccgcatcctgctgctggacgagccgtcctcctacctggaccccataacgctgcag
gtcctgagaaagacgctgaagcagtcgttttccgcctgcaccgtcatcctgtcggaacac
aaagtggagccgctgctggagtgccagtcgttcctgatgatcgagaagagctctgtgaaa
agctacgacaccattcagaaactcatgaacgaaatgagtcacctgaagcaggccatcagc
cccgccgacaggctccgcctcttccccacgcctcaccgcctcaactcagtcaagagaccg
ccgcctcagaccgccaagatctcgtcgctaccagaggaagccgaggacgaaatccaggac
acgcggctttaa
DBGET
integrated database retrieval system
