KEGG   Xiphophorus couchianus (Monterrey platyfish): 114143762
Entry
114143762         CDS       T05908                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    114143762 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xco03400]
    114143762 (tdp1)
DNA repair and recombination proteins [BR:xco03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     114143762 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 114143762
NCBI-ProteinID: XP_027871873
LinkDB
Position
4:complement(29233324..29242844)
AA seq 621 aa
MSQDSLHGKWTVSSSDDDDEVLPSSGTATPKSRRPAESSHVVSSGSPSPVPEPAPPEVKA
EPDSAPVSALAVGSEARQLAARNQRNPVKFQTSPSLSWKRKKEPSDGSGWALSDSDDEDD
AEGKRNSRSKLPNRAAPNGEAKKPKKESECPPSPHGRLYYTDEPDDFFEASFPCLNDIYR
FYLNKVTGLDRKFNSGALHIRDILSPLFGNLKESVQFNYCFDIPWMVKQFPSEFRHCPVL
IVHGDKREAKARLLQQGQPFPHVRFCQAKLDIAFGTHHTKMMLLWYEEGFRVIILTSNLI
RADWYQKTQGMWMSPLFPRLPEGSSESSGESPTFFKRDLLEYLASYRAPELDEWIQRIKE
HDLSETRVYLVASTPGRYVGADMERWGHLRLRKLLYDHTNPIPDEEQWPVIGQFSSIGSM
GMDKTKWLAGEFQRTLTTLGKSSLRSDPPVHLLYPSVEDVRTSLEGYPAGGSLPYSIQTA
QKQMWLHSYFHCWKARRTGRTHAMPHIKTYMRVSPDSTQLLWFLVTSANLSKAAWGAMEK
NNTQIMVRSYELGVLYVPSAFSMKTFPIDTNPFPASSSSTLGFPVPFDLPPTSYSPTDQP
WIWNIPYSQEPDTHGNIWVPS
NT seq 1866 nt   +upstreamnt  +downstreamnt
atgtctcaggacagtctgcatggcaagtggaccgtctccagcagcgacgacgacgatgaa
gttcttccttcttcgggaaccgcaacaccaaagtcccgtcgaccagctgagtccagtcac
gtcgtctccagcgggtctccctctccggtaccagaaccagctcccccggaggtgaaagca
gaaccggacagcgcccctgtgtccgctctcgctgttggttctgaggccagacagttggca
gcgaggaaccagaggaacccagtcaagttccaaaccagcccgtcgctgagctggaagcgg
aagaaagagccctcggacggctccggctgggctctctcagacagcgacgacgaagacgac
gcagaagggaaaaggaacagtcggagtaagctgccgaaccgggcggcgccaaacggcgag
gcgaaaaagccgaagaaggagagcgagtgtccgccaagtccccacggccgactctactac
acagacgagccggacgacttctttgaggcgtcctttccctgccttaatgacatctacaga
ttctacctgaacaaagtcacagggctggacaggaagttcaacagcggagcgctgcacatc
agagacattctgtccccattattcgggaacctgaaagagtctgtccagtttaactactgt
ttcgatattccctggatggtgaagcagttcccatcagagttcagacattgtccggttctg
atcgtccatggagacaagcgggaggccaaggcacggctccttcagcagggccagcctttc
ccacacgttcgcttctgccaggctaaactggacattgcttttggaactcaccacacgaag
atgatgctgctgtggtatgaggaaggcttcagagtcatcatcctcacctccaacctcatc
agagcggactggtatcagaagacgcaagggatgtggatgagtcctctgtttccacggtta
ccagaggggagcagcgagagttcaggggagtcgcccaccttcttcaagcgggacctgctg
gagtacctggcgtcataccgcgcaccagaactggacgagtggatccagcggatcaaagag
cacgacctgtcagagaccagagtttatttggtcgcctccacgccggggagatacgtcggc
gcagacatggagcgctggggccacctgaggctcaggaagctgctgtatgatcacacaaat
ccaattccagacgaggaacagtggcctgtgattggccagttctccagcatcggctccatg
gggatggataagaccaaatggctggcgggggaatttcagcgcacgctgaccacacttgga
aaatcctccctccgatcagaccctcccgttcatttgctctacccgtcagtagaagatgtg
aggacgagtttggaaggttacccagctggaggctctcttccttacagcatccagacggct
cagaaacagatgtggctccattcctacttccactgctggaaggcgaggaggacggggagg
actcacgccatgccacacatcaagacgtacatgagggtttcaccggattccactcagctc
ctctggttcctcgtcaccagtgccaacctgtccaaggcggcatggggagccatggagaag
aacaacacgcagataatggtgcgttcttatgagctgggagtcctctacgttccgtcagcg
ttcagcatgaagacattccccatcgataccaatccatttcctgcctcctcctcatctacg
cttggattcccggtgccctttgaccttccgcctaccagctactcgccaacagaccagcca
tggatctggaatatcccatacagccaggaaccggacactcacggcaacatctgggtcccc
tcttag

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