Xiphophorus couchianus (Monterrey platyfish): 114143839
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Entry
114143839 CDS
T05908
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco02010
ABC transporters
xco04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
114143839
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
114143839
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xco02000
]
114143839
Transporters [BR:
xco02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
114143839
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
114143839
NCBI-ProteinID:
XP_027871974
LinkDB
All DBs
Position
5:complement(32406619..32442822)
Genome browser
AA seq
2270 aa
AA seq
DB search
MAVSTQLGLLLWKNFTYRRRQTIQLLIEIIWPLFIFFILISVRMYYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRNPTPGETPGIVGNFNDSIISRLFNDAKKILMYTQNDK
SYEGYRGMLGALRKLQKNPARFKLKDFLRDDETLSHFLHHNASLSHHTLKQILEADVNLE
KVLTKGFGFHLRDLCNVTPLEEFVHIADRNVSHLTQEIICKSSSNWLNKAQNHFLSNLDF
LKPIRKDVSSDPKAVQDVSAATNNLLESLGTLGVELASMKSWKDMRKEILYLTANSTGSP
KQMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGHHGNDSDSEPMSTYDNSSTPYC
NNLMKNLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIHEVNKTFQELGVLRDLGGM
WEEMKPKFWSFMENSEEMDLVRSLLQSNTSAVFLDAQLSETEWSVSDVADFLTKASEDRR
PSGSAYTWRDAFNETDRAIKTISQFMECVNLDKLESVPNEERLVNKSMGLLDNQKFWAGI
VFPNIAPNSTDLPPNINYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYVWGGFSYL
QDVIEQGIIRAITGTEEKTGIYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIII
KGVVYEKEARLKETMRIMGLNNGTLWLSWFISSLIPLLISAGLLVMLLKMGNLLPYSDSG
VVFLFLGSFGVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGAK
LVVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEEDSYNLTTSICLMLFDAVLYG
IMTWYIEAVFPGQYGIPRPWYFPFTRTYWCGEKENQNINTPLSKKSNADAVCFEEDPSHI
DPGVYIENLVKIYSHGNKLAVDGLTLKFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRSELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLPEEKVKAEMEQI
VNDVGLPHKRKSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
KYRQARTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTHLGTGYYLTLVKRDYD
LSLQSCRNSASTVSYMKKTEKEDSVSESSSDAGLGSEPESETTTIDISLISSVIFKHVSE
ARLVEDLGHEITYVLPYQSAKDGAFVELFHELDDRLTDLGISSYGISDTTLEEIFLKVAE
DSGVDSVELSDGVVPTRTRRRHAFGDHQSCLKPFTEDDFDFNDSEGDPESRETDWLGGTD
GKGSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFG
KYPSLALHPSMYGEQFSFISNDIPEEPHNNKLLGALMDKPGFGTRCMEGEPIPDTPCVEV
KDDWMLPQVPQSVSDIFDKGNWTMENPSPLCECSCEGRKRMLPECPAGAGGLPPPQMMIS
DKDTLQNLTGRNVSDYLVKTYAQIIGKSLNNKIWVNEFRYGGFSLGARGSHVLSHTGDID
EAIVQLRQLFQLEQGTTAHRFFSSLSGFIQGLDTKNNVKIWFNNKGWHSIGSFLNVMNNA
ILRSSLKPGQDPTKFGITAYNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASF
VVFLIQERVTKAKHMQFISGVQPLLYWLANFIWDMCNYIVPAALVIIIFVCFQQEAYVSS
TNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFG
SNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGKN
LFAMAIEGVIFFCITVLIQYRFCFKARSSTGHLKPIGEEDEDVARERQRILSGGGQLDIL
ELRQLTKIYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSDVTSGEAYL
AGKSVNTEINEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVAEWGIRKL
GLIKYVDKAAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALWNAILSIIK
EGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPDL
RLVMEFIERELPGSTLKEKHRNMLQYQLPSSLTSLARIFSLLSKNKEALSIEDYSVSQTT
LDQVFVNFAKDQSDEDHLKDIHLSKRDAVVVDLSQLNSFLTDSKTRESCV
NT seq
6813 nt
NT seq
+upstream
nt +downstream
nt
atggcagtctccactcagctgggtctactgctatggaagaacttcacctacagacgaaga
caaaccatccagttgctgattgaaatcatttggcccttatttatcttcttcatcctgata
tcagtccggatgtattatcctccctatgaacaacatgaatgtcactttcctaacaaggcc
atgccctcagcaggtaccctgccctgggtacaaggcattatctgtaatgccaacaatccc
tgctttcgtaatccgacccctggagaaactccaggcatagttggaaattttaatgactcc
ataatttcccgtctgtttaacgatgccaagaagattcttatgtacacccagaacgataag
agctacgaaggctaccggggaatgctgggagccctcagaaagcttcagaagaaccctgct
cgattcaagctgaaagacttcttgagagacgacgaaacgctttctcacttcctgcaccac
aacgcatcgctctctcatcacacgttgaagcaaattttggaggctgacgtcaatttggag
aaggtgctcacaaaaggttttggattccatctcagagatctttgcaacgtaacaccgctg
gaggagtttgtccacattgcagaccgtaacgtgtcccacttgactcaagagatcatctgc
aaatcatccagtaactggctgaacaaggctcagaaccacttcctctccaatttggacttt
ctgaaaccgattcgaaaggatgtgagttcagaccccaaagctgtccaagacgtctcagct
gcaaccaacaatctcctggagagcctcggcacacttggcgttgagcttgccagcatgaag
agctggaaagacatgagaaaggagatcctgtatctgactgcaaactcaacaggatctccg
aagcagatgtaccaggcagtgtcgcgtattgtttgcggacatccagagggaggcggcctg
aagatcaaatccctcaactggtatgaagacaacaattacaaggctctgtttggacaccac
ggcaacgacagtgacagtgagcccatgtccacctatgacaactcttcaactccttactgt
aacaacctaatgaagaacctggagtccagccccatttccaggatgatttggagagccctc
aaacctcttctaatggggaagatcctgtataccccagacactccagcaacacagaggatc
attcacgaggttaacaagaccttccaggagctgggggtgctgagagatctgggcggcatg
tgggaagaaatgaaacctaaattttggagcttcatggagaacagcgaagagatggactta
gtcaggtccttgctccaaagcaacaccagcgctgttttcctggacgctcagctcagtgag
accgagtggagtgtgtccgacgtggcggacttcctcacaaaagcctcagaggaccgcaga
ccttcgggatcagcttacacatggagggacgcgttcaatgaaaccgatcgtgccataaag
actatttcacagtttatggagtgtgtgaacttggacaaactggagtcagtccccaatgag
gaacgcttggtcaacaagtccatgggtcttctggataaccagaagttctgggcgggaatc
gtgtttcccaacatcgctcccaatagcaccgacctgcctcccaacatcaactacaaaatc
cgcatggacatcgataatgtggagaggacgaacaagatcaaagacggatactgggatcct
ggtcccagagcggacccctttgaggacctgcggtacgtctggggcggattttcttacctg
caggatgtcattgagcaaggaatcatccgagccatcactggtactgaggagaagacgggc
atttacatccagcagatgccctacccttgctatgttgatgatatattcctgcgagttatg
agccggtcgatgcctctcttcatgactttggcttggatgtactctgtggccatcatcatc
aaaggcgtggtgtatgagaaggaggcgcgactgaaggagaccatgaggatcatgggacta
aacaacggcaccctgtggctgagctggttcatcagcagtttaatcccactgctgatcagc
gccggcttactggtgatgttgctgaagatgggaaacctattgccgtacagcgactcaggc
gttgtgtttcttttcctgggatccttcggtgttgtaaccatcatgcagtgttttctgatc
agcactctgttttcacgtgccaacctggcggcggcctgcggaggaataatatacttcacc
ctctacctgccctacgttctgtgtgttgcttggcaagattacgtgggatttggagcaaaa
cttgtagtgagtcttctgtcccctgtggcttttggcttcggctgtgagtactttgccctg
tttgaggaacaaggtgtgggaatccagtggtctaaccttctagcaagccccctggaggag
gacagctacaacctgaccacctctatatgcctcatgctgttcgatgcagtgctgtacgga
ataatgacttggtacattgaagccgtttttcctggtcagtacgggatccccaggccttgg
tatttccctttcacaagaacatattggtgcggagagaaggagaatcaaaacattaatact
cctctgtcaaagaagagcaacgctgacgctgtgtgcttcgaggaggacccaagccacatc
gacccgggtgtttacattgaaaacctggtgaagatctacagccatggaaacaagctggct
gtggacggattgacccttaaattctatgaaggccagatcacctccttcctcggccacaac
ggagctggcaagactacaaccatgtcaatcctgactggactgttcccacccacctctggc
accgcctacatcctcggcaaggacatccgctccgagctcagcaccatccgacagaacctg
ggggtctgcccccagcacaatgtgcttttcagcatgttgaccgtcgaggagcacatctgg
ttctacgctcgcctgaagggcctgcctgaagagaaagtgaaggctgaaatggaacagatc
gtcaacgatgtcggactgccacacaagcgaaagtctcgcaccagcacgctgtcaggtgga
atgcagaggaagttgtctgtagcgctggcgtttgtcggaggttctaaggttgtcattctg
gacgagcctactgctggtgttgatccgtacgcacgcaggggaatctgggatctgctcctt
aaatacagacaagcccgcaccatcatcctttccacccaccacatggatgaggctgacatc
ctgggcgaccgtattgctatcatttcccatggcaagctgtgctgcgtgggctcctctctc
ttcctgaagactcacctcggaaccggctactacctgacgctggtcaagagagactacgac
ctgtctctacagtcctgcaggaattctgccagcaccgtctcctacatgaaaaagacagag
aaggaggacagcgtatcagagagcagttcagatgctggtcttggcagcgaacctgaaagt
gagactaccactattgacatctccctcatctccagtgtgattttcaaacacgtctcagag
gctcgtctggtggaagatctcgggcatgagatcacctacgtcttgccataccagtcggct
aaagacggcgcctttgttgagcttttccatgagcttgatgatcgacttactgacttagga
atttcaagttacggaatttctgacaccaccttggaagagattttcctgaaagtggcagaa
gatagcggtgttgattctgttgagctttcagatggagtcgtaccaaccagaacccgacgg
cgacatgcttttggagaccaccagagctgcctgaagcctttcaccgaggatgattttgac
ttcaatgactctgaaggtgacccagaatctcgtgagactgactggctcggtggaacagat
ggcaaaggttcatatcaggtcaaaggctggagtctgaagagacagcagtttgttgcgctc
ctgtggaaacggttcctctacgctcgccgctctaggaaaggctttttcgctcagattgtt
ctgccagcagtgtttgtgtgcattgcactggtcttcagcctcattgttcctccgttcggg
aaatacccgagtctggctctgcatcccagcatgtatggagagcagtttagcttcatcagt
aacgacatacccgaagaaccccacaacaacaaactgctgggagctttgatggacaaacca
ggatttggaactcgatgcatggaaggagagcccataccggacactccctgtgtggaggtg
aaggatgattggatgctccctcaggttcctcaaagtgtcagtgatatatttgacaaaggc
aactggactatggaaaacccgtctccactgtgtgagtgcagctgtgaaggccgtaagagg
atgctgcccgagtgtcccgctggggccggtggacttccaccgccacagatgatgatcagt
gacaaagacacactgcagaatttgactggtagaaacgtgtcggactacctggtcaaaacc
tacgctcagatcatcggcaagagcttgaataacaagatctgggtcaatgagttcagatac
ggtggattctctctgggcgcccgaggttcccatgttttgtcccacacaggtgatattgat
gaagctattgtgcaactcaggcaactcttccaacttgaacagggaacgacagcccatcgt
tttttcagcagtctctctggttttatccaaggattggacacaaagaataacgttaagatt
tggtttaacaacaagggctggcacagcattggctccttcctcaacgtgatgaacaacgcc
attctgcggtcgagtctcaaacctggtcaagacccgacgaagtttggcatcaccgcttac
aaccatccactaaacctcaccaaggagcagctctcacaagttgcattgatgacgacatct
gtggacgtgttggtgtccatttgtgtcatcttcgccatgtcctttgtccctgccagtttt
gtggtcttcctcatccaggagagagtaacaaaggccaaacatatgcagttcatcagtggt
gtgcagcccttgctttactggctggccaactttatttgggatatgtgcaactacatcgtt
ccagctgcgctagtgatcatcatatttgtctgtttccaacaagaagcctacgtttcttcc
accaatctaccagtactggctctgctgcttctcctctatgggtggtcaatcacccctctg
atgtacccagcctctttcttctttaagatccccagcactgcctatgtagttctaaccagt
gtcaacatactgattggaatcaatggcagtgtgtccacgtttgtcctggagttgtttgga
agtaatgagattggtggtattaatgacatcttgaagaatgtattcctcatcttccctcac
ttctgcctgggtagaggactgattgacatggtgaagaatcaagccatggctgatgctttg
gagagatttggtgaaaaccggtttcgctctcctctggcatgggacatggtgggaaagaac
ctgttcgccatggctatagagggagttattttcttctgcatcaccgtcctcattcagtac
cgcttctgctttaaagccagatcctccaccggccatctgaaaccaattggagaagaggac
gaagatgttgccagagagcgacagaggatcctgagcggcggtggacagttggacattctt
gagctgaggcagctcaccaagatttacaagcggaaacagaagccggccgtggaccggctg
tgtgttggcatccctcccggagagtgttttggtttgcttggggtcaacggagcaggaaag
accagcaccttcaaaatgttgactggagactcagatgtgaccagcggtgaggcctactta
gctggcaagagcgtaaacacagaaataaacgaggtgcatcagaacatgggctactgtcct
cagtttgatgccatcaacgaccttctgactggaagagagcacctcgagttctacgccatc
ttgagaggagtacctgagaaggaagtctgcgaggtggcagagtgggggatacggaaactg
ggattgatcaagtatgtggacaaagcagcagggagctatagtggaggaaacatgaggaaa
ctctccactgccattgcactcataggaggaccccctgttgtgtttttggatgaaccaaca
acaggaatggaccctaaggcacgtcgggccctctggaacgccatcctgagcatcatcaaa
gagggacgttccgtggtcctcacctcccacagtatggaggagtgtgaagcactctgtacc
agaatggctatcatggtgaacggcaggttccgctgtctgggcagtgtgcagcaccttaaa
aatcggttcggagacggctacaccatcatcttgcgcgtggcgggaccggacccggaccta
cggctggtgatggagttcatagagcgggaattaccggggagcacgttgaaggagaaacac
cgcaacatgctgcagtaccagctcccgtcttcgctcacctccctcgcccgaatcttctcc
cttctctccaaaaacaaggaggcactcagcatagaggactactctgtctctcagactact
ttagatcaagtgtttgttaatttcgccaaggaccaaagtgacgaggaccacttgaaagac
atccacctgagcaagcgggatgcagtcgtggtggacctttctcaattgaactctttcctc
acggacagcaaaacaagagagagctgcgtctga
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integrated database retrieval system
