Xiphophorus couchianus (Monterrey platyfish): 114143898
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Entry
114143898 CDS
T05908
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03440
Homologous recombination
xco03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
114143898 (palb2)
03460 Fanconi anemia pathway
114143898 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xco03400
]
114143898 (palb2)
DNA repair and recombination proteins [BR:
xco03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
114143898 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
114143898 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
114143898
NCBI-ProteinID:
XP_027872089
LinkDB
All DBs
Position
5:complement(38721115..38732321)
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AA seq
1349 aa
AA seq
DB search
MDGNIGNILHSEEQLRNTLQCDDKEKLRRKLAHLQREYLKTAQRLKRAECVDALKRHVKN
RISLQKDQDKNDPEITSTACVTPSSFTFNTNDATPGSLQCQGAVESSTIRSQQVIRFLLS
GDLTSSKTPDLSSDIAGSHRPSTALRLRSRRSRLRWEKRSANAPEGSHNSQRQQALTGNT
RPGDEEQTIRDEDVFIESQELFSDPESESPSLLLTHWSTQEHTKAGDKTGNGNQRSQEEI
GKKIGPEVDGKCGRPALTTESKGQNAGENSLINNTMGEDGVSHSQARKPVVCEKGNPDGA
QMTAIEKHEDSVEIKEKNNRITADENTVSLLDSCTLVEGLPFPVEYYIRTTRHMTLSQTQ
PDMQAVIMSQLRAGRQRRSRGRSRRSNQGLQRSDRHTQTDSASSTTPSTSVDSLKLSNVN
ASKDYSQSSSDFSTSAISEAPVSLRGPSVRPPKGTRTGRGRGRPPRQQLLKQGCSLTSGG
LQPSLSFAPSTQLLHQAEETNTESMLFQQTPTHSCPAQPSSPVSETPSGFTAEHQEKISP
IFLKSSTSRPQQMNTGSSDCQALLLPSSSSSSSSSSQTAQLSLPSLISRLKSLEIQQDFH
LPDDQFASLKLHKLRQVAVESAPSHNTRRRSSCRHSAVDLLMPCSFPLSSTSTIRNSLRP
NKSERTSPQQTQCTVTNNLTGTRLNEELCNSSIPETNAELSADALNTSTEAVSLVQEFTE
GLEAGTENGAALSSTCTSINTDEPQALVDRTPRKENDVQLSDEPEVEQSENEKQPSLEEL
GLTDGRITQLLSFDFSESKAAEDAPTSCTNDAAANPPVNNPNPQYPAEDFAEPTKADSSD
DGAIKSNASQFLFKSPLDAVGCPCTGLPSIYHPSPTPASSPVLPSLGITPNAARLPSDSS
PSAPPLCLPPSPSPSTQDLSPLDLCAGASITSLPSNLPPPSLCSQLQDLSEPVGPRDQGD
REEPDDCPTPSRIQLQGSAVEVGITTHGPAQKFLLRCTHTLEAPAGGSLVDVCCVSDPSA
GVCVAAAGKWAVCLWSQTSECNWSLKHTWTFSEPVINVFPVPDSTGLMFVSLGQLEIRQL
RLLSCCSLRQTLILEDIIQAVAGLFNSRVVTSSDSAAGSTLQVFTLSDSTSLLTPQPLVS
PGVCVSALAPVEGLPDALIGTDEVGHLFIWNLKSGQLLSRVLLEDSLSNTACLKGYSYCG
VLLVLLQHQFLSSLDQEEKKAREKCLLSEARSKPALFSLVGINPLSGRSVLSTWLYPPDG
WTGRLCEVDVNRCSVVGLSQSGCVCVWELGEGGTSQMMEAQEDGYWQLARWGHEDTLVIG
HQNGDVSLHPYDVRPTKKGAKADAETPPL
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atggatggcaatattggtaacattctgcacagtgaggaacagctgaggaacacgctgcaa
tgtgatgacaaggaaaagcttcgtagaaaactggcacatttacaaagggagtatctcaag
acagcccagagactaaagcgtgccgagtgtgtggatgctttgaagaggcatgtgaaaaac
aggatttctctgcagaaagaccaagacaagaacgatccagagattacatctaccgcttgc
gttaccccctcctcatttacatttaacacaaacgatgcaactccaggttcactacagtgt
caaggtgcagtagaatccagtacaatcaggagtcaacaagtaatacgattcttgctttcc
ggagatctgacttcctccaaaaccccagatctcagtagtgacatcgctggcagccacaga
cccagcacggccttgcgcctgcggtcgagacgcagccgcttacgctgggaaaagaggagt
gccaacgctcccgaaggctcacacaacagccagcgacagcaggcgttgacaggaaacaca
agacctggagatgaggagcagacgatcagagacgaagatgtcttcattgaaagtcaggag
ctgttttctgatccagaatctgagtccccctctcttctactcacacattggagcacgcaa
gaacacaccaaggccggagacaaaacaggaaacgggaatcaaagatcccaggaagaaata
gggaaaaaaattggtccagaagttgatggaaaatgcggaagacctgctttaacaacagag
agtaaaggacaaaatgctggagaaaacagtttaataaataatacaatgggagaagatggt
gtcagtcatagccaagcaagaaaaccagtggtatgtgaaaagggcaaccctgatggagcc
caaatgacagcaattgaaaaacatgaggactctgtagaaataaaagagaaaaataatcgg
atcacagcagacgagaatactgtaagtctcctagactcttgcacattagtggaaggacta
cctttccctgtagagtactacattagaaccacaaggcacatgacgctatcccagacccag
ccagatatgcaggctgtcataatgtcccagctgagagctgggagacaacgcaggagtcga
ggccgcagcaggaggtcaaaccagggcctacagcggtcagaccggcacactcagacggat
tcagcctcttccacaactccgtccacatctgtggactctctaaagctatccaacgttaac
gcttccaaagattattcccagagttccagtgacttttctacctctgccatttcggaagct
cctgtttcacttcggggccccagcgttcgtccacccaaagggacgaggacaggcagaggc
aggggaagacctccgagacaacagcttcttaaacaaggatgtagcctgacctcaggagga
ctccagccctccctcagctttgcaccgtctacccagttactccatcaagccgaagagaca
aacaccgagtcaatgttattccagcagactcccactcacagctgtccagcccaaccttct
tctccagtcagtgaaactccatctggttttactgctgaacaccaggagaaaatctctcct
atctttctgaagagcagcaccagcagaccccaacagatgaacacaggctcatcagactgt
caggctcttctcctgccctcctcctcctcctcctcctcttcatcgtctcagacagctcag
ctttctcttccctctttgatcagccgcctgaagagcctggaaatccagcaagattttcac
ctccctgatgatcagtttgcctccttgaagctgcacaagctccgtcaggttgctgtggaa
tcagccccgtcacacaacacacgcagacgctccagctgccggcacagcgccgtcgatctg
ctgatgccctgttccttcccgctcagttccacatctaccatcagaaattctctccgtcca
aacaagagcgagcgaacatctccacagcagacacaatgcacggttactaataatttgaca
ggcacgcggttaaatgaagagctttgtaactcaagtattccagaaacgaatgcagagctc
agtgcggacgctctcaacacctcaacagaagctgtttcactggtgcaagagtttactgaa
gggcttgaagctggaactgaaaacggggcagccctcagcagtacatgtacatctataaac
acagatgaaccacaggctctggtggaccgaacaccgcgcaaagaaaatgatgtgcaactt
tcagatgagccagaagttgagcaatctgaaaatgaaaagcaaccctctttagaagagctt
ggactcacagacggacgcatcactcagttgctttcctttgatttttctgaaagtaaagca
gcagaggacgctccgaccagctgcactaacgacgctgcagcaaacccacctgtaaataac
ccaaacccacagtatcctgcagaagattttgcggaacctactaaagcagactcttctgac
gatggagcgattaaaagtaacgcctctcagttcttgtttaagtctcctctggatgcagtg
ggatgcccctgtacaggcctgccatccatctaccatccgtcacccactccagcttccagt
ccggtcctgccctccctgggaatcacccctaatgctgctcgcctgccctctgactcctct
ccctctgctcctcctctctgcctgcctccgtctcccagcccgtccacccaggatctgtct
cctctggatctttgtgctggtgcatccatcacctccctcccttccaaccttcctcctccc
tctctctgcagtcagcttcaggatttatcagagcctgtaggtccaagagatcagggtgac
agagaagaacctgacgactgcccgactccatccaggatccaactgcaaggctcggctgtg
gaagtgggaataacgacgcacggacctgcacagaagttcttactgaggtgcacacacaca
ctggaggcgccagcagggggctctttggtggatgtgtgctgtgtgtcggacccatcggcc
ggtgtgtgtgtcgcagcagcaggaaagtgggcagtgtgcctgtggagccagacttcagaa
tgtaactggagcctcaaacacacctggaccttcagtgagcctgtgataaacgtgtttcct
gtcccagactccaccggcctcatgtttgtgtctcttggtcagctggaaataagacagctg
agactgctgtcctgttgcagcctcaggcagacgctgatacttgaggacatcatccaggcg
gtggctggcttattcaactccagagtggtcacgtcctccgactcggccgcaggctccact
ctgcaggtgtttaccctgtcagacagcaccagcttactgactcctcagcctcttgtgtct
cctggtgtttgtgtgagcgccctcgctccagtagaggggcttcctgatgctctcatcggt
acagatgaagtgggacaccttttcatctggaatttaaagagtggccagctgctgagcaga
gtgctgcttgaagacagtctatccaacacagcctgtctcaaaggttactcctactgtgga
gtgttgttggtcctgctgcaacatcagtttctaagctccctggaccaagaagagaaaaag
gcaagagagaaatgcttgctatcagaggcgagatcgaagccagctctgttctctttagtc
ggcatcaaccctctgagtggaagatccgtcttatccacttggctgtatcctccggatggc
tggactggcaggctttgtgaagtggacgttaaccgctgcagcgtggtgggcctgagtcag
agcggctgtgtctgtgtgtgggagctcggagaaggggggacgtcccaaatgatggaggct
caggaggacgggtactggcaactggctcgatgggggcacgaggacaccctggtgatcggg
catcagaacggagacgtctctttgcatccgtacgacgtgaggccgactaagaaaggtgct
aaagctgacgctgaaactccaccgttgtga
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integrated database retrieval system
