Xiphophorus couchianus (Monterrey platyfish): 114144018
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Entry
114144018 CDS
T05908
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04517
IgSF CAM signaling
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
114144018
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114144018
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xco04812
]
114144018
Cytoskeleton proteins [BR:
xco04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
114144018
Intermediate filaments
Intermediate filament-binding proteins
114144018
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
SCAR_helical
Motif
Other DBs
NCBI-GeneID:
114144018
NCBI-ProteinID:
XP_027872249
LinkDB
All DBs
Position
5:complement(1275887..1306901)
Genome browser
AA seq
2374 aa
AA seq
DB search
MTPPLQLSQSERSIQTQHNHWCGGPEAARISRPIMMTTVAAEYDPMELHGQYSSSDTVNN
RWDDDWDNENSSARLFERSRIKALADEREAVQKKTFTKWVNSHLSRVSCRITDLYLDLRD
GRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHR
LTLGLIWTIILRFQIQDISVETEDNKEKRSAKDALLLWCQMKTAGYSNVNIHNFTTSWRD
GMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDHPDEK
SVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIETEKMIEKYESLASDLLEWIEQTIII
LNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYMPR
EGKLISDINKAWERLEKAEHERELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRL
VSQDNFGFDLQAVEAATKKHEAIETDIAAYEERVQAVVAVAKELEAERYHDIKRITARKD
NVIRLWEYLLELLKARRQRLEMNLGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVE
DLLQKHALVEADIAIQADRVKAVVNNANKHSVADSGYKPCDPQIIQDRVAHLEFCYQELT
QLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQILSSMEHSKDLTGAVRLLSQQRALE
DEMSGRAGHLQHTIAEGRAMVDAGHFGAAKIQERVSDLQAQWAALEQLAAVRKKRLEEAL
AMHQFQADADDVDAWTLDALRIVSSGETGHDEFSTQALVRKHKDAAAEVASYRSVIDSLH
EQVALLPKEEAESEVVQGRLAGIEERYKEVSELTKLRKQALQDALALYKMMSEAGACEVW
IDEKEQWLNSMEIPEKLEDLEVIQHRFENLEPEMNNQASRVAVVNQIARQLIHSGHPSET
NIKTQQDKLNNRWSQFRDLVDQKKESLNSALGVQNYHLDCNETKSWIKEKTKLIESTQEL
GNDLTGVMALQRKLTGMERDLVAIEDKLGDLRGEAQRLAEEHPDQANAITDRLAEITAVW
DEMKNTLKTREESLGEARKLQQFLRELDDFQSWLSRTQTAIASEDMPNTLSEAEKLMAQH
ESIKNEIHNYEEDYQKMRDMGEMVTQGQVDAQYMFLRQRLQALDTGWNDLLKMWENRQNL
LSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMPTTLEGAEGAIKKQEDFMTTMDANEEK
INGVVEAGRRLAGDGNINAERILERVASIDDRHKKNREAAVELLMRLKDNRDLQKFLQDC
QELSLWISEKMLTAQDMTYDEARNLHSKWLKHQAFMAELQSNKEWLDKIQKDGTLLVSEK
PETEEEVKEKLASLHTLWEKLESTTQTKAQGLFDANKAELFTQSCADLDKWLGSLEGQIQ
SDDYGKDLTSVNILLKKQQMLENQVDVRQREVVELQSQVKALGQEVKDTDEVDGRRRVVE
KKFQELLEPLRCRRDFLVASREVHQFNRDVEDELLWAQERMPVATSTEHGHNLQTVQLLI
KKNQTLQKEIQGHQPRINDILERSRSLLQDKSSNTDLIRQRLADLQQLWKELMEEVEQRH
GRLEEAHKAQQYYFDAAEAEAWMSEQELYMMSEEKAKDEQSAVTMLKKHQIMEQAVEDYA
ETVHQLSKTSRGLVAAGHPESERISMRQSQVDKLYAGLKDLSEERRGKLDERLRLFQLNR
EVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDAVNRLADEL
INSGHGDAATVAEWKDGLNEAWADLLELIDTRTQILAASFELHKFYHDAKEILGRIADKQ
KKLPEEVGRDQNTVETLQRMHNTFEHDIQALGTQVRQLQEDAARLQSAYAGDKADDIQRR
EGEVLEAWRSLLEACDGRRLRLLDTGDKFRFFSMVRDLMLWMDDVIRLIEAQEKPRDVSS
VELLMNNHQGIKAEIDARNDSFTACIELGKALLARKHFASEEIKEKLLQLTDKRKEMIDK
WEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPYLSSRELGRSVDEVEKLIKRHEAFEKS
AATWEERFSALERLTTMELLEVRRQQEEEERMRKPPGPEPVLVQQDGPQQQSAVTQNGLP
SDQDQDSPQDAVEGGGLVNGMVERGSKEPSPAPSPTSARKSGGSQSATMPARSQEAPALL
EGPLHRKHEWEGPNKKASNRSWHHVYCVIRGAELGFYKDGKAAAQGAPYHGEAAVGLKDA
ACDVASDYKKKKHVFKLRVSDGNEFLFQAKDEEEMSSWIQAVLSAERPAPGAAPGTPPSG
RAQTLPASVSLPAESSPGKRDKEKRFSLFSKKKQ
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgacccccccattacagctcagccaatcagagcgcagcatccagactcaacataatcat
tggtgtggtggccctgaagcggcccgtatcagccgacccatcatgatgacgacggtggcg
gccgagtacgacccgatggagctgcacggccagtacagcagcagcgacaccgtcaacaac
cgctgggacgacgactgggacaacgagaacagctccgcccggctcttcgagcgatcgcgc
atcaaggccctggcagatgaacgtgaagcggtccagaagaagaccttcaccaagtgggtc
aactcccacctgtccagagtctcctgcaggatcaccgacctttacctggacctgagggac
ggccgcatgctcatcaagctgctggaggttctgtccggagagaggctgcccaagcccacc
aaaggccggatgcgcatccactgcctggagaacgtggacaaagcgctgcagttcctgaag
gagcagcgggttcacctggagaacatgggatcccacgacatcgtggacggcaaccaccga
ctcactctgggcctcatctggaccatcatcctgcgcttccagatccaggacatcagtgtt
gagactgaagacaataaggagaagcgatcggccaaggacgccctgctcctgtggtgccag
atgaagacggccggttattccaacgtcaacatccacaacttcaccaccagctggagagac
ggcatggccttcaacgccctcatccacaaacacagacctgacctgatcgacttcgacaag
ctgaagaagtccaacgctcactacaacttgcagaacgcgtttaacctggcggagcagcac
ctgggcctcaccaagctactggacccagaagatatcagcgtggaccatcctgatgagaag
tctgtcatcacctacgtggtcacctactaccactacttctccaagatgaaggcgctgaag
gtggagggcaaacgcatcgggaaggtgttggacaacgccatcgagaccgagaagatgata
gagaagtacgagtcgctggcgtcggacctgctggagtggatcgaacagaccatcatcatc
ctgaacaacaggaagttcgccaactccctggtgggagtccagcagcagctgcaggccttc
aacacgtaccggaccgtggagaaaccgcccaagttcacagagaaggggaacctggaggtt
ctgctcttcaccatccagagcaagatgagggccaacaaccagaaggtctacatgccccgt
gaggggaagctcatctcagacatcaacaaggcctgggaacgcctggagaaggcggagcat
gagagggagctggctcttcggacggagctgatccgacaggagaaactggagcagctggcc
agacgctttgaccgcaaggcagccatgagggagacctggctcagtgaaaaccagaggctg
gtgtctcaggacaactttggcttcgacctccaagccgtggaggcggccaccaagaagcac
gaggccatcgagacggacatcgcggcgtacgaggagcgtgttcaggccgtggtcgccgtg
gcgaaggagctggaggcggagcgttaccacgacatcaagcgcatcacggccagaaaggac
aacgtgatccggctgtgggagtacctgctggagctgctgaaggcccgccggcagcggctg
gagatgaacctgggcctgcagagggtcttccaggagatgctctacattatggactggatg
gacgagatgaagatgctgctgctgtctcaggactacgggaagcacctgctgggcgtggag
gacctgctgcagaaacacgcgctggtggaggccgacatcgccatccaggccgacagggtg
aaggccgtcgtcaacaacgccaacaagcactcggtggccgacagcggctacaagccctgt
gatcctcagatcatccaggaccgggtggcccacttggagttctgctaccaggagctgacc
cagctggccgctgagcgccgtgcacgtctcgaggaatctcgccgactctggaagttcttc
tgggaaatggcggaggaagagggctggatccgggagaaggagcagatcctgtcctccatg
gagcacagcaaggacctgaccggggcggtgcgcctcctgagccagcagcgggccctggag
gacgagatgagtggccgggccggacacctgcagcacaccatcgctgagggccgggccatg
gtggatgccggtcactttggtgctgccaagatccaggagcgagtctcagacctgcaggct
cagtgggcggcgctggagcagcttgcagcagtgagaaagaagagactggaggaagctctg
gccatgcaccagttccaggccgatgcggacgatgtggatgcgtggacactggacgctctg
cgcatcgtctccagtggagagacgggccatgatgagttctccacccaggctctggtcagg
aagcacaaggatgctgcagcggaggtggccagctaccgttcggtcatcgactctctgcat
gagcaggtcgccctgctgcccaaagaggaggcggagtcagaggtcgtgcagggccgccta
gctggcattgaggagcgctacaaggaagtgtccgagctcacgaagctgaggaagcaggcg
ctccaggatgcactggctctctacaagatgatgagtgaggctggtgcctgcgaagtttgg
atcgacgagaaggagcagtggttgaacagcatggagattcctgagaaactggaggacctg
gaggtgatacagcacaggtttgagaatctggagccagagatgaacaaccaagcgtctcgc
gttgctgtggtgaaccagatcgcccgacagctgattcacagcggccatccgagcgagaca
aacatcaagactcagcaggataaactgaacaacaggtggagccagttccgagacctggtg
gaccagaagaaggagtccctgaactctgcgctgggtgtgcagaactatcatctcgactgc
aatgagaccaaatcctggatcaaagaaaagaccaaactaatcgagtccacccaggagctg
ggcaatgacctcaccggagtcatggctctgcagaggaagctgaccggcatggagcgagac
ttggtggccatcgaagacaagctgggtgacctgcggggtgaagcccagaggctggctgag
gagcatcctgaccaggccaacgccatcacagaccggctggctgagatcactgccgtctgg
gacgagatgaagaatactctgaaaacacgagaggagtccctgggcgaagccaggaagctg
cagcagttcctgcgagagcttgacgacttccagtcctggctgtcccgcactcagacagcc
atcgcctccgaagacatgcccaacacgctgtctgaggccgagaagctgatggctcaacac
gaaagcatcaaaaatgagatccacaactacgaggaggactaccagaagatgagagacatg
ggggagatggtgacgcagggccaggtggacgcccagtacatgttcctgaggcagcggctg
caggcgctcgacaccggctggaacgacctgctcaaaatgtgggagaaccggcagaacctg
ctgtctcagtcgcacgcctaccagctgttcctgagggacaccaagcaggcagaggctttc
ctcaacaaccaagagtacgtgctggctcacacagagatgccgaccaccctggagggcgcc
gagggcgccatcaagaagcaggaggacttcatgaccacaatggacgccaacgaggagaag
atcaacggtgtggtggaggcaggcaggaggctggccggtgacgggaacatcaacgccgag
cgcatccttgagagagtggcctctatcgatgacaggcacaagaagaacagggaggcagca
gtggagctgctgatgagactgaaggacaaccgcgatcttcagaagttcctgcaggactgc
caggagctctctttatggatcagtgagaagatgctgacggctcaggacatgacctacgac
gaggccaggaacctgcacagcaagtggctgaagcaccaggccttcatggccgagctgcag
tccaacaaggagtggctggacaagatccagaaggatgggacgctgctggtgtcagagaag
ccagagacggaggaggaggtgaaggagaagctggcgtcactccacaccttgtgggagaag
cttgagtccaccactcagaccaaagctcagggtctgtttgacgccaacaaggcagagctg
tttacacagagctgtgccgacttggacaagtggctgggcagcctggagggccagatccag
tccgacgactacggcaaagacctgacatctgtcaacatacttctgaagaaacagcagatg
ctggagaaccaggtggatgtgcgccagagggaggtggtggagttgcagagccaagtgaag
gcccttggtcaagaggtgaaggacacagatgaggtggacgggaggagacgggtggtggag
aagaagttccaggagctgctggagccactgcggtgtcgcagggacttcctggtggcatcc
agagaagtccatcagttcaaccgtgatgtggaggatgagcttctctgggcccaggagagg
atgccagtggccacatccactgagcatggacacaacctgcagacagtccagctgctcatc
aagaagaaccagacgctgcagaaggagatccagggccatcagcctcgtatcaacgacatc
ctggagcgcagccgcagcctactgcaggacaagtcctccaacaccgacttgatccggcag
cgcctggccgacctgcagcagctgtggaaggagctgatggaggaggtggagcagcggcac
ggccgactggaggaggcccacaaagctcagcagtactactttgacgccgctgaggccgag
gcttggatgagtgaacaggagctctacatgatgtcagaggagaaagccaaggacgagcag
agcgccgtaaccatgctgaagaagcatcagatcatggagcaggctgtggaggactacgca
gagaccgtccatcagctgtccaagaccagccgaggactagtggccgccggacaccctgaa
agcgagcggatcagcatgcggcagtctcaggtggacaagctgtacgccggcctgaaggac
ctgtctgaggagaggcggggcaagctggacgagaggctccgcctcttccagctcaacagg
gaggtggacgacctggagcagtggatcgctgaacgggaggtggtggccgggtctcacgag
ctgggccaggactacgaacatgtcacgatgctacaggaacgtttccgggagtttgcgcgg
gacaccgggaacatcgggcaggagagagtggacgccgtgaataggctggcggacgagcta
atcaactccgggcatggcgacgcggccacggtggcggagtggaaggacgggctgaacgag
gcctgggccgacctgctggagctcatcgacactcggacgcagatcctcgccgcctccttc
gagctccacaagttctaccacgacgccaaggagatcctgggacgcatcgcagacaagcag
aagaagctgccggaggaggtcggtcgggaccagaacacagtggagacgctgcagaggatg
cacaacaccttcgaacacgacatccaggcactgggaacacaggtgaggcagcttcaggag
gacgccgcgcgcctgcagtcggcatacgccggagacaaagccgacgacatccagcggcgg
gagggtgaagtgctggaggcgtggaggagcctgctggaggcctgcgacggacgcaggctc
cgcctcctcgacaccggggacaagttccggttcttcagcatggtccgcgacctgatgctc
tggatggacgacgtgatccggctcatcgaggcccaggagaagcccagagacgtttcctct
gtggagctgctgatgaacaaccatcagggcatcaaagcggagatcgacgcccgcaacgac
agcttcacagcctgcatcgagctgggcaaggccctgctggcccgcaagcacttcgcctca
gaggagatcaaggagaagctgctgcagctcaccgacaagaggaaggagatgatcgacaag
tgggaggaccgctgggagtggctccgcctcatcctggaggtgcaccagttctcgcgggac
gcgggcgtggccgaggcctggctgctgggccaggagccctacctgtccagccgggagctg
ggccgcagcgtggacgaggtggagaagctcatcaagcgccacgaggccttcgagaagtcc
gccgccacctgggaggaacgcttctccgccctggagcggctgaccacgatggagctgctg
gaagtcaggaggcaacaggaggaagaggagaggatgaggaagccaccgggtccagaaccg
gttctggtccagcaagacggaccccagcagcaaagcgccgtgacccagaacggactccca
tcggatcaggaccaggactctcctcaggacgccgtggaaggcggcggcctggtgaacggc
atggtggagcgcggatccaaggagccgagccccgccccctcgccgacctcggccaggaag
tcaggcggcagccagtcggccacgatgccggcccgcagccaggaggcgccggctctgctg
gaggggccgctacaccgcaagcacgagtgggaggggcctaacaagaaggcgtccaacagg
tcctggcaccacgtgtactgtgtgattcgcggcgcggagctgggcttctacaaggacggc
aaggcggcggcccagggcgccccgtaccacggggaggcggccgtcggcctgaaggacgcc
gcctgtgacgtcgcctccgactacaagaagaagaaacatgtcttcaagctcagagtctcc
gatgggaacgagtttctgttccaagccaaagatgaagaggagatgagctcgtggatccag
gccgtgctgagcgctgagcgccccgcccccggcgccgccccgggcacgccgccctccggg
cgcgctcagacgctcccggccagcgtgtcgctgcccgccgagtcgagcccggggaaacgg
gacaaggagaaacgcttcagcctgttcagcaagaagaaacagtag
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integrated database retrieval system
