Xiphophorus couchianus (Monterrey platyfish): 114144018
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Entry
114144018 CDS
T05908
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114144018
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xco04812
]
114144018
Cytoskeleton proteins [BR:
xco04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
114144018
Intermediate filaments
Intermediate filament-binding proteins
114144018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
Motif
Other DBs
NCBI-GeneID:
114144018
NCBI-ProteinID:
XP_027872249
LinkDB
All DBs
Position
5:complement(1275887..1306901)
Genome browser
AA seq
2374 aa
AA seq
DB search
MTPPLQLSQSERSIQTQHNHWCGGPEAARISRPIMMTTVAAEYDPMELHGQYSSSDTVNN
RWDDDWDNENSSARLFERSRIKALADEREAVQKKTFTKWVNSHLSRVSCRITDLYLDLRD
GRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHR
LTLGLIWTIILRFQIQDISVETEDNKEKRSAKDALLLWCQMKTAGYSNVNIHNFTTSWRD
GMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDHPDEK
SVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIETEKMIEKYESLASDLLEWIEQTIII
LNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYMPR
EGKLISDINKAWERLEKAEHERELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRL
VSQDNFGFDLQAVEAATKKHEAIETDIAAYEERVQAVVAVAKELEAERYHDIKRITARKD
NVIRLWEYLLELLKARRQRLEMNLGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVE
DLLQKHALVEADIAIQADRVKAVVNNANKHSVADSGYKPCDPQIIQDRVAHLEFCYQELT
QLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQILSSMEHSKDLTGAVRLLSQQRALE
DEMSGRAGHLQHTIAEGRAMVDAGHFGAAKIQERVSDLQAQWAALEQLAAVRKKRLEEAL
AMHQFQADADDVDAWTLDALRIVSSGETGHDEFSTQALVRKHKDAAAEVASYRSVIDSLH
EQVALLPKEEAESEVVQGRLAGIEERYKEVSELTKLRKQALQDALALYKMMSEAGACEVW
IDEKEQWLNSMEIPEKLEDLEVIQHRFENLEPEMNNQASRVAVVNQIARQLIHSGHPSET
NIKTQQDKLNNRWSQFRDLVDQKKESLNSALGVQNYHLDCNETKSWIKEKTKLIESTQEL
GNDLTGVMALQRKLTGMERDLVAIEDKLGDLRGEAQRLAEEHPDQANAITDRLAEITAVW
DEMKNTLKTREESLGEARKLQQFLRELDDFQSWLSRTQTAIASEDMPNTLSEAEKLMAQH
ESIKNEIHNYEEDYQKMRDMGEMVTQGQVDAQYMFLRQRLQALDTGWNDLLKMWENRQNL
LSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMPTTLEGAEGAIKKQEDFMTTMDANEEK
INGVVEAGRRLAGDGNINAERILERVASIDDRHKKNREAAVELLMRLKDNRDLQKFLQDC
QELSLWISEKMLTAQDMTYDEARNLHSKWLKHQAFMAELQSNKEWLDKIQKDGTLLVSEK
PETEEEVKEKLASLHTLWEKLESTTQTKAQGLFDANKAELFTQSCADLDKWLGSLEGQIQ
SDDYGKDLTSVNILLKKQQMLENQVDVRQREVVELQSQVKALGQEVKDTDEVDGRRRVVE
KKFQELLEPLRCRRDFLVASREVHQFNRDVEDELLWAQERMPVATSTEHGHNLQTVQLLI
KKNQTLQKEIQGHQPRINDILERSRSLLQDKSSNTDLIRQRLADLQQLWKELMEEVEQRH
GRLEEAHKAQQYYFDAAEAEAWMSEQELYMMSEEKAKDEQSAVTMLKKHQIMEQAVEDYA
ETVHQLSKTSRGLVAAGHPESERISMRQSQVDKLYAGLKDLSEERRGKLDERLRLFQLNR
EVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDAVNRLADEL
INSGHGDAATVAEWKDGLNEAWADLLELIDTRTQILAASFELHKFYHDAKEILGRIADKQ
KKLPEEVGRDQNTVETLQRMHNTFEHDIQALGTQVRQLQEDAARLQSAYAGDKADDIQRR
EGEVLEAWRSLLEACDGRRLRLLDTGDKFRFFSMVRDLMLWMDDVIRLIEAQEKPRDVSS
VELLMNNHQGIKAEIDARNDSFTACIELGKALLARKHFASEEIKEKLLQLTDKRKEMIDK
WEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPYLSSRELGRSVDEVEKLIKRHEAFEKS
AATWEERFSALERLTTMELLEVRRQQEEEERMRKPPGPEPVLVQQDGPQQQSAVTQNGLP
SDQDQDSPQDAVEGGGLVNGMVERGSKEPSPAPSPTSARKSGGSQSATMPARSQEAPALL
EGPLHRKHEWEGPNKKASNRSWHHVYCVIRGAELGFYKDGKAAAQGAPYHGEAAVGLKDA
ACDVASDYKKKKHVFKLRVSDGNEFLFQAKDEEEMSSWIQAVLSAERPAPGAAPGTPPSG
RAQTLPASVSLPAESSPGKRDKEKRFSLFSKKKQ
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgacccccccattacagctcagccaatcagagcgcagcatccagactcaacataatcat
tggtgtggtggccctgaagcggcccgtatcagccgacccatcatgatgacgacggtggcg
gccgagtacgacccgatggagctgcacggccagtacagcagcagcgacaccgtcaacaac
cgctgggacgacgactgggacaacgagaacagctccgcccggctcttcgagcgatcgcgc
atcaaggccctggcagatgaacgtgaagcggtccagaagaagaccttcaccaagtgggtc
aactcccacctgtccagagtctcctgcaggatcaccgacctttacctggacctgagggac
ggccgcatgctcatcaagctgctggaggttctgtccggagagaggctgcccaagcccacc
aaaggccggatgcgcatccactgcctggagaacgtggacaaagcgctgcagttcctgaag
gagcagcgggttcacctggagaacatgggatcccacgacatcgtggacggcaaccaccga
ctcactctgggcctcatctggaccatcatcctgcgcttccagatccaggacatcagtgtt
gagactgaagacaataaggagaagcgatcggccaaggacgccctgctcctgtggtgccag
atgaagacggccggttattccaacgtcaacatccacaacttcaccaccagctggagagac
ggcatggccttcaacgccctcatccacaaacacagacctgacctgatcgacttcgacaag
ctgaagaagtccaacgctcactacaacttgcagaacgcgtttaacctggcggagcagcac
ctgggcctcaccaagctactggacccagaagatatcagcgtggaccatcctgatgagaag
tctgtcatcacctacgtggtcacctactaccactacttctccaagatgaaggcgctgaag
gtggagggcaaacgcatcgggaaggtgttggacaacgccatcgagaccgagaagatgata
gagaagtacgagtcgctggcgtcggacctgctggagtggatcgaacagaccatcatcatc
ctgaacaacaggaagttcgccaactccctggtgggagtccagcagcagctgcaggccttc
aacacgtaccggaccgtggagaaaccgcccaagttcacagagaaggggaacctggaggtt
ctgctcttcaccatccagagcaagatgagggccaacaaccagaaggtctacatgccccgt
gaggggaagctcatctcagacatcaacaaggcctgggaacgcctggagaaggcggagcat
gagagggagctggctcttcggacggagctgatccgacaggagaaactggagcagctggcc
agacgctttgaccgcaaggcagccatgagggagacctggctcagtgaaaaccagaggctg
gtgtctcaggacaactttggcttcgacctccaagccgtggaggcggccaccaagaagcac
gaggccatcgagacggacatcgcggcgtacgaggagcgtgttcaggccgtggtcgccgtg
gcgaaggagctggaggcggagcgttaccacgacatcaagcgcatcacggccagaaaggac
aacgtgatccggctgtgggagtacctgctggagctgctgaaggcccgccggcagcggctg
gagatgaacctgggcctgcagagggtcttccaggagatgctctacattatggactggatg
gacgagatgaagatgctgctgctgtctcaggactacgggaagcacctgctgggcgtggag
gacctgctgcagaaacacgcgctggtggaggccgacatcgccatccaggccgacagggtg
aaggccgtcgtcaacaacgccaacaagcactcggtggccgacagcggctacaagccctgt
gatcctcagatcatccaggaccgggtggcccacttggagttctgctaccaggagctgacc
cagctggccgctgagcgccgtgcacgtctcgaggaatctcgccgactctggaagttcttc
tgggaaatggcggaggaagagggctggatccgggagaaggagcagatcctgtcctccatg
gagcacagcaaggacctgaccggggcggtgcgcctcctgagccagcagcgggccctggag
gacgagatgagtggccgggccggacacctgcagcacaccatcgctgagggccgggccatg
gtggatgccggtcactttggtgctgccaagatccaggagcgagtctcagacctgcaggct
cagtgggcggcgctggagcagcttgcagcagtgagaaagaagagactggaggaagctctg
gccatgcaccagttccaggccgatgcggacgatgtggatgcgtggacactggacgctctg
cgcatcgtctccagtggagagacgggccatgatgagttctccacccaggctctggtcagg
aagcacaaggatgctgcagcggaggtggccagctaccgttcggtcatcgactctctgcat
gagcaggtcgccctgctgcccaaagaggaggcggagtcagaggtcgtgcagggccgccta
gctggcattgaggagcgctacaaggaagtgtccgagctcacgaagctgaggaagcaggcg
ctccaggatgcactggctctctacaagatgatgagtgaggctggtgcctgcgaagtttgg
atcgacgagaaggagcagtggttgaacagcatggagattcctgagaaactggaggacctg
gaggtgatacagcacaggtttgagaatctggagccagagatgaacaaccaagcgtctcgc
gttgctgtggtgaaccagatcgcccgacagctgattcacagcggccatccgagcgagaca
aacatcaagactcagcaggataaactgaacaacaggtggagccagttccgagacctggtg
gaccagaagaaggagtccctgaactctgcgctgggtgtgcagaactatcatctcgactgc
aatgagaccaaatcctggatcaaagaaaagaccaaactaatcgagtccacccaggagctg
ggcaatgacctcaccggagtcatggctctgcagaggaagctgaccggcatggagcgagac
ttggtggccatcgaagacaagctgggtgacctgcggggtgaagcccagaggctggctgag
gagcatcctgaccaggccaacgccatcacagaccggctggctgagatcactgccgtctgg
gacgagatgaagaatactctgaaaacacgagaggagtccctgggcgaagccaggaagctg
cagcagttcctgcgagagcttgacgacttccagtcctggctgtcccgcactcagacagcc
atcgcctccgaagacatgcccaacacgctgtctgaggccgagaagctgatggctcaacac
gaaagcatcaaaaatgagatccacaactacgaggaggactaccagaagatgagagacatg
ggggagatggtgacgcagggccaggtggacgcccagtacatgttcctgaggcagcggctg
caggcgctcgacaccggctggaacgacctgctcaaaatgtgggagaaccggcagaacctg
ctgtctcagtcgcacgcctaccagctgttcctgagggacaccaagcaggcagaggctttc
ctcaacaaccaagagtacgtgctggctcacacagagatgccgaccaccctggagggcgcc
gagggcgccatcaagaagcaggaggacttcatgaccacaatggacgccaacgaggagaag
atcaacggtgtggtggaggcaggcaggaggctggccggtgacgggaacatcaacgccgag
cgcatccttgagagagtggcctctatcgatgacaggcacaagaagaacagggaggcagca
gtggagctgctgatgagactgaaggacaaccgcgatcttcagaagttcctgcaggactgc
caggagctctctttatggatcagtgagaagatgctgacggctcaggacatgacctacgac
gaggccaggaacctgcacagcaagtggctgaagcaccaggccttcatggccgagctgcag
tccaacaaggagtggctggacaagatccagaaggatgggacgctgctggtgtcagagaag
ccagagacggaggaggaggtgaaggagaagctggcgtcactccacaccttgtgggagaag
cttgagtccaccactcagaccaaagctcagggtctgtttgacgccaacaaggcagagctg
tttacacagagctgtgccgacttggacaagtggctgggcagcctggagggccagatccag
tccgacgactacggcaaagacctgacatctgtcaacatacttctgaagaaacagcagatg
ctggagaaccaggtggatgtgcgccagagggaggtggtggagttgcagagccaagtgaag
gcccttggtcaagaggtgaaggacacagatgaggtggacgggaggagacgggtggtggag
aagaagttccaggagctgctggagccactgcggtgtcgcagggacttcctggtggcatcc
agagaagtccatcagttcaaccgtgatgtggaggatgagcttctctgggcccaggagagg
atgccagtggccacatccactgagcatggacacaacctgcagacagtccagctgctcatc
aagaagaaccagacgctgcagaaggagatccagggccatcagcctcgtatcaacgacatc
ctggagcgcagccgcagcctactgcaggacaagtcctccaacaccgacttgatccggcag
cgcctggccgacctgcagcagctgtggaaggagctgatggaggaggtggagcagcggcac
ggccgactggaggaggcccacaaagctcagcagtactactttgacgccgctgaggccgag
gcttggatgagtgaacaggagctctacatgatgtcagaggagaaagccaaggacgagcag
agcgccgtaaccatgctgaagaagcatcagatcatggagcaggctgtggaggactacgca
gagaccgtccatcagctgtccaagaccagccgaggactagtggccgccggacaccctgaa
agcgagcggatcagcatgcggcagtctcaggtggacaagctgtacgccggcctgaaggac
ctgtctgaggagaggcggggcaagctggacgagaggctccgcctcttccagctcaacagg
gaggtggacgacctggagcagtggatcgctgaacgggaggtggtggccgggtctcacgag
ctgggccaggactacgaacatgtcacgatgctacaggaacgtttccgggagtttgcgcgg
gacaccgggaacatcgggcaggagagagtggacgccgtgaataggctggcggacgagcta
atcaactccgggcatggcgacgcggccacggtggcggagtggaaggacgggctgaacgag
gcctgggccgacctgctggagctcatcgacactcggacgcagatcctcgccgcctccttc
gagctccacaagttctaccacgacgccaaggagatcctgggacgcatcgcagacaagcag
aagaagctgccggaggaggtcggtcgggaccagaacacagtggagacgctgcagaggatg
cacaacaccttcgaacacgacatccaggcactgggaacacaggtgaggcagcttcaggag
gacgccgcgcgcctgcagtcggcatacgccggagacaaagccgacgacatccagcggcgg
gagggtgaagtgctggaggcgtggaggagcctgctggaggcctgcgacggacgcaggctc
cgcctcctcgacaccggggacaagttccggttcttcagcatggtccgcgacctgatgctc
tggatggacgacgtgatccggctcatcgaggcccaggagaagcccagagacgtttcctct
gtggagctgctgatgaacaaccatcagggcatcaaagcggagatcgacgcccgcaacgac
agcttcacagcctgcatcgagctgggcaaggccctgctggcccgcaagcacttcgcctca
gaggagatcaaggagaagctgctgcagctcaccgacaagaggaaggagatgatcgacaag
tgggaggaccgctgggagtggctccgcctcatcctggaggtgcaccagttctcgcgggac
gcgggcgtggccgaggcctggctgctgggccaggagccctacctgtccagccgggagctg
ggccgcagcgtggacgaggtggagaagctcatcaagcgccacgaggccttcgagaagtcc
gccgccacctgggaggaacgcttctccgccctggagcggctgaccacgatggagctgctg
gaagtcaggaggcaacaggaggaagaggagaggatgaggaagccaccgggtccagaaccg
gttctggtccagcaagacggaccccagcagcaaagcgccgtgacccagaacggactccca
tcggatcaggaccaggactctcctcaggacgccgtggaaggcggcggcctggtgaacggc
atggtggagcgcggatccaaggagccgagccccgccccctcgccgacctcggccaggaag
tcaggcggcagccagtcggccacgatgccggcccgcagccaggaggcgccggctctgctg
gaggggccgctacaccgcaagcacgagtgggaggggcctaacaagaaggcgtccaacagg
tcctggcaccacgtgtactgtgtgattcgcggcgcggagctgggcttctacaaggacggc
aaggcggcggcccagggcgccccgtaccacggggaggcggccgtcggcctgaaggacgcc
gcctgtgacgtcgcctccgactacaagaagaagaaacatgtcttcaagctcagagtctcc
gatgggaacgagtttctgttccaagccaaagatgaagaggagatgagctcgtggatccag
gccgtgctgagcgctgagcgccccgcccccggcgccgccccgggcacgccgccctccggg
cgcgctcagacgctcccggccagcgtgtcgctgcccgccgagtcgagcccggggaaacgg
gacaaggagaaacgcttcagcctgttcagcaagaagaaacagtag
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integrated database retrieval system
