Xiphophorus couchianus (Monterrey platyfish): 114144116
Help
Entry
114144116 CDS
T05908
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114144116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xco03041
]
114144116
03009 Ribosome biogenesis [BR:
xco03009
]
114144116
Enzymes [BR:
xco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114144116
Spliceosome [BR:
xco03041
]
Complex A
U1 snRNP components
U1 related factors
114144116
Complex B
114144116
Ribosome biogenesis [BR:
xco03009
]
Eukaryotic type
Pre-60S particles
Helicases
114144116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
BNIP2
Motif
Other DBs
NCBI-GeneID:
114144116
NCBI-ProteinID:
XP_027872416
LinkDB
All DBs
Position
5:9103377..9115366
Genome browser
AA seq
636 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGNRGGPPPGKFGNPGERLRKRHWNLDELPKFQK
NFYQEHLDVTHRPLQEVEEYRRSKEVTVKGRDCPKPIVKFHEAAFPSYVMDVIVKQNFTD
PTPIQSQGWPVALSGKDMVGIAQTGSGKTIAYLLPAIVHIQHQPFLEHGDGPICLVLAPT
RELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YVQINIGALQLSANHNILQIVDVCNDLEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDE
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRFGKAPILIATDVASRGLDVEDVKFVINY
DYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAE
DRGGRGRGGRGGYRDDRRDRYSGGRSNFGGGGGYRDRDGDRGFGNGPKTAFGGNKAQNGG
NYGGNNSNSSGNYGNSNYSNSNGQGNFSAAPNQGGAGGFGNQNFQGPPQFGGMQRPAQNG
VNHPPFPFNSQPPPQNQQPPPPPPMVPYPMPPPFPQ
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcttttcagacagagaccggggcagagatagaggttatggtggcggccctcct
cgttttggtggcggtggaggaggcaacaggggaggccctcctccaggaaagtttggaaac
cccggagaaaggctgaggaagagacactggaacctggatgagcttccaaagtttcagaag
aacttctaccaggaacacctggacgtcacacacagacctctgcaagaggttgaagagtat
cggagaagcaaagaagtcacagtgaaaggcagagattgtcccaaaccgatcgttaaattc
catgaagctgcttttccaagctatgtcatggatgttattgttaagcagaacttcactgac
ccgactccaatccagtcccaggggtggccagtcgctctgagcggcaaagacatggtgggc
atcgctcaaactggctctgggaaaaccattgcttatcttctgccggcaattgttcacatc
caacatcagccgttcttggagcacggagacggacccatttgcttggttctggccccgacc
agggagctggctcagcaggtgcaacaagtggctgctgaatatgggagggcttctcgtctc
aagagtacctgcatctatggtggcgcgccaaaagggccacaaataagggacctggagagg
ggagtggagatttgcatcgctactccaggccgtctcattgatttcctggagtgtggtaaa
accaatctgcgtcgttgcacctaccttgtgctggatgaagccgaccgcatgctggacatg
ggctttgaacctcagatccgcaaaatagtggaacaaattcggcctgatcgtcagactctg
atgtggagcgccacctggccgaaagaggttcgtcagctggctgaggacttcctgaaggat
tatgtccagatcaatattggtgcattgcagctcagtgccaatcataacatcctgcagata
gttgatgtctgcaatgacctggagaaggaggacaagctgatccgtttgttggaggagatc
atgagcgaaaaggagaacaagaccattatctttgtggagaccaagcgacgttgtgatgaa
cttaccaggagaatgagaagagatgggtggccagcaatgggtatccatggagacaagagc
cagcaagaaagggactgggttcttaatgagttcagatttggcaaagctccaattctgatt
gctacagacgtggcttcccgtggtttagatgtggaggatgtgaaatttgtcatcaattat
gactaccctaactcctccgaggactatatccaccgcattggccgcacggcccgcagtcaa
aaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaggccagcgacctg
atctctgtgctgcgcgaggctaaccaggccatcaatcccaagctcatccagatggcagag
gacagaggaggtcgcggacgggggggaagaggtggctatagggatgaccgtcgcgatagg
tattcaggcggcagaagtaacttcggtggcggcggcggctacagggacagggacggcgat
agagggttcggcaacggcccgaaaactgcctttgggggaaacaaagcccaaaacggtggg
aattacggaggcaacaatagcaattctagcggtaactatggcaacagcaattacagcaat
agtaacggacagggtaactttagcgctgcaccaaaccaaggcggcgctggcggctttggt
aaccagaacttccagggcccccctcagtttggcggtatgcagaggcccgcccagaacggc
gtgaaccacccgccattccccttcaactctcagccaccgccacagaaccaacagccaccg
ccaccgccaccgatggtgccctacccgatgccgccgccattccctcagtaa
DBGET
integrated database retrieval system
