Xiphophorus couchianus (Monterrey platyfish): 114144290
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Entry
114144290 CDS
T05908
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
xco
Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114144290 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xco03019
]
114144290 (patl1)
Messenger RNA biogenesis [BR:
xco03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114144290 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
114144290 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
114144290
NCBI-ProteinID:
XP_027872752
LinkDB
All DBs
Position
5:complement(1799182..1810236)
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AA seq
799 aa
AA seq
DB search
MFRFQSLDDDCTLEEEDDGLIDEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDGL
GAGRGPGGGDCSPSPASSAAAGRLPPLCFSSSSSGPPGQDERSGGGDLAESLARFILDAD
PAVAGVGAAERRGPAPGSAGPVLSAPRGPDQPRVLQQPASIPPKHQLPPGPPASGLPASS
VLSYQQQQHLLRRGAAPMAQMNSHSIWDNSLGFGPVSVTPGLVTHMEDSPLMSIIKEVGL
PKRPPQGRSDEGHDLSERAPPPRSSSPVIGSPPVRAVPIGTPPKHPMSLNHQVHHPTAVH
VRAPVQHRFPAPFPERLSPNTLLNMANSPLCRGPFPPRVGPVLSQLQRAQLLNSQVAGFP
RGGPGPPLLAGAGFRPFFGGPPPPHGHRMGPPPPHGPPNHTPPIRHNTTHLHPQHRRMLT
QRMQSRGGDRVRTGLDRRSRDPYSNLMSQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYE
KMEKRQEKERDSSRKEHTTKLITPQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAV
VTTRSDDEEKREKQVWNKRRQVLYTVEKMFSLLLEVQDFEKRFVQTPEEDRDALLEQHKS
NTEQLSNSLQDGDWEDRVSDEQCVMIMSVRKGKRLVARLLPFLPAAQAAAVVMAIARNLP
AIAKKDKQDQALCCLVEPVSAVIQSLSSSALTDLLQELQGGEGQLAAALQNKFGVTLLFL
ILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELLGVPSSSLAPPLFTPPNLLSLFSRYV
DRQRLELLQDKLQISASSR
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgacgactgtacgctggaggaagaggatgatgggctg
atcgacgaggaagatgagatcgatcagtttaatgacgacacgtttggagccggcgccatc
gatgacgactggcaggaggagcacaagcgcctggcggagctggatgagcgggacgggctg
ggcgccgggcggggcccggggggcggggactgctccccaagccccgcctcctccgccgcc
gcgggtcggctccctccgctctgcttctcctcgtcttcctctgggccgccgggtcaagac
gagcggtcgggaggcggcgacctggccgagtctctggcccgcttcattctggacgccgac
ccggccgtcgccggcgtcggagcggcagagaggcgcggtccggcccccgggtcggccggg
ccggttttgtccgcgccgcggggcccggaccagcccagagtcctgcagcagcccgcctcc
atcccccccaagcaccagctgccccccggacctcccgcctcaggcctgcccgcctcctcc
gtgctcagctaccagcagcagcagcacctcctgcgcagaggagccgctcccatggcccag
atgaactctcacagcatctgggacaacagcctgggcttcgggccggtcagtgtcacgccg
ggactcgtcacacacatggaggacagtccactgatgtccatcatcaaggaggtggggctt
ccgaagcgccctcctcaggggaggagcgacgaaggtcacgacctgtcagagagggcacca
cccccccgctcctcctctcctgtgattggctctcctccggtgagggcggtgcccatcggg
acgccgcccaaacacccgatgagcctgaaccatcaggtccaccaccccacggcggttcat
gtgcgcgccccggtccagcaccggttccccgctccgttccctgagcgcctgtcccccaac
acgctgctcaacatggccaactctccgttgtgtcgcggtccgttccctcccagagtcggc
ccggttctgtctcagctccaacgggctcagctgctcaactcccaggtggcaggttttcct
cgcggcggccccggccctcccctgctagccggcgccgggttcaggcccttcttcgggggc
ccccctcctcctcacggccacaggatgggccccccgccgccccacggcccccccaaccac
acgccgcccatcaggcacaacacgacgcacctccaccctcagcaccgccgcatgctgacg
cagcgcatgcagagccgcggcggcgaccgggtcagaaccgggctggaccgccgcagccgg
gacccgtacagcaacctgatgagccagaaggagaaggagtgggtgaccaagatccagatg
atgcagctgcagagcaccgacccgtacctggacgactactactaccagaactattatgag
aagatggagaagcgccaggagaaggagcgagacagcagcaggaaggagcacaccaccaag
ctcatcactccgcaggtggccaaggtggagcacacctaccggccagttcagtttgcagga
tctctggggaagctgacggtgtccagcgtcaacaacccgaggaagatgatcgacgccgtg
gtaacgacccgctccgatgacgaggagaaaagggagaagcaggtgtggaacaagaggcgc
caggtgctgtacaccgtggagaagatgttcagtctgctgctggaggtccaggactttgag
aaacgcttcgtccaaacgccagaggaggacagagacgctctgctggagcaacacaagagc
aacacggagcaactgagcaactcactgcaggacggggactgggaggacagggtgagtgat
gaacagtgtgtgatgatcatgtcggtgaggaaagggaagcggctcgtcgccaggctcctc
cccttcctgcctgcggcgcaggctgctgccgttgtcatggcgatcgcacgcaacctcccg
gccatagcgaagaaggacaagcaggaccaggccttgtgctgcctggtggagccggtctct
gcagtcatccagtctctgtccagctccgccctcacagacctgctgcaggagctgcagggc
ggcgagggccagctggccgccgcgctgcagaacaagttcggcgtgacgctgctgtttctg
atcctgagcgaaggagagcgcatgcagagctccgacccaaactgtcagctcatggacgac
aatcgatggaccgagttggtgttctcggtgaccagggagctgctcggcgtcccgtcttcg
tcgctggctccgcccctcttcacgcctcccaacctgctgtctctgttctcgcgctacgtg
gatcggcagaggctggagctgctgcaggacaagctacagatttctgcttcgtccaggtag
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